assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003193785.1_ASM319378v1	NZ_CP029681	Staphylococcus aureus strain AR_0473 chromosome, complete genome	1	427446-427577	1,1	PILER-CR,CRISPRCasFinder	no	DEDDh	WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	Unclear	CAGGTTGGCGGGGCCCCAACAAAGAGAA,CAGGTTGGCGGGGCCCCAACACAGA	28,25	2	20	427530-427560|427530-427560|427530-427560|427530-427560|427530-427560|427530-427560|427530-427560|427530-427560|427530-427560|427530-427560|427519-427549|427519-427549|427519-427549|427519-427549|427519-427549|427519-427549|427519-427549|427519-427549|427519-427549|427519-427549	NZ_CP029681.1_79770-79800|NZ_CP029681.1_753689-753719|NZ_CP029681.1_1066054-1066024|NZ_CP029681.1_1275939-1275909|NZ_CP029681.1_1758968-1758938|NZ_CP029681.1_2049985-2049955|NZ_CP029681.1_2626642-2626672|NZ_CP029681.1_68853-68883|NZ_CP029681.1_1544673-1544703|NZ_CP029681.1_1587128-1587158|NZ_CP029681.1_79770-79800|NZ_CP029681.1_753689-753719|NZ_CP029681.1_1066054-1066024|NZ_CP029681.1_1275939-1275909|NZ_CP029681.1_1758968-1758938|NZ_CP029681.1_2049985-2049955|NZ_CP029681.1_2626642-2626672|NZ_CP029681.1_68853-68883|NZ_CP029681.1_1544673-1544703|NZ_CP029681.1_1587128-1587158	NA:NA	2,1	2	Orphan	WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	NA|31aa|up_6|NZ_CP029681.1_422157_422250_+,NA|37aa|up_2|NZ_CP029681.1_425255_425366_+,NA|138aa|up_1|NZ_CP029681.1_425394_425808_+,NA|129aa|down_1|NZ_CP029681.1_428727_429114_+,NA|92aa|down_6|NZ_CP029681.1_433095_433371_-	NA|177aa|up_9|NZ_CP029681.1_419473_420004_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|up_8|NZ_CP029681.1_420250_421321_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_7|NZ_CP029681.1_421387_421942_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|up_6|NZ_CP029681.1_422157_422250_+	NA	NA|167aa|up_5|NZ_CP029681.1_422331_422832_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_4|NZ_CP029681.1_423123_424437_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_3|NZ_CP029681.1_424438_425170_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|up_2|NZ_CP029681.1_425255_425366_+	NA	NA|138aa|up_1|NZ_CP029681.1_425394_425808_+	NA	NA|329aa|up_0|NZ_CP029681.1_426238_427225_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|NZ_CP029681.1_427752_428511_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|NZ_CP029681.1_428727_429114_+	NA	NA|234aa|down_2|NZ_CP029681.1_429128_429830_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|NZ_CP029681.1_429826_430870_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|NZ_CP029681.1_430859_431489_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|NZ_CP029681.1_431600_432818_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|NZ_CP029681.1_433095_433371_-	NA	NA|155aa|down_7|NZ_CP029681.1_433377_433842_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|NZ_CP029681.1_433988_434189_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|419aa|down_9|NZ_CP029681.1_434191_435448_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
GCF_003193785.1_ASM319378v1	NZ_CP029681	Staphylococcus aureus strain AR_0473 chromosome, complete genome	2	1275845-1275930	2	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	4	1275875-1275900|1275875-1275900|1275875-1275900|1275875-1275900	NZ_CP029681.1_1065932-1065957|NZ_CP029681.1_1544794-1544769|NZ_CP029681.1_1496040-1496065|NZ_CP029681.1_2462557-2462532	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	NA|76aa|up_6|NZ_CP029681.1_1268643_1268871_-,NA|75aa|down_0|NZ_CP029681.1_1276113_1276338_-,NA|49aa|down_1|NZ_CP029681.1_1276294_1276441_-,NA|78aa|down_3|NZ_CP029681.1_1278549_1278783_+,NA|62aa|down_4|NZ_CP029681.1_1279404_1279590_+,NA|169aa|down_7|NZ_CP029681.1_1281389_1281896_-,NA|24aa|down_9|NZ_CP029681.1_1282944_1283016_+	NA|45aa|up_9|NZ_CP029681.1_1263938_1264073_-	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|63aa|up_8|NZ_CP029681.1_1266954_1267143_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|316aa|up_7|NZ_CP029681.1_1267391_1268339_+	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|76aa|up_6|NZ_CP029681.1_1268643_1268871_-	NA	NA|497aa|up_5|NZ_CP029681.1_1269177_1270668_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|311aa|up_4|NZ_CP029681.1_1270905_1271838_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_3|NZ_CP029681.1_1271860_1272862_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_2|NZ_CP029681.1_1273299_1274025_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_1|NZ_CP029681.1_1274119_1274845_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_0|NZ_CP029681.1_1274952_1275669_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|down_0|NZ_CP029681.1_1276113_1276338_-	NA	NA|49aa|down_1|NZ_CP029681.1_1276294_1276441_-	NA	NA|320aa|down_2|NZ_CP029681.1_1277113_1278073_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|down_3|NZ_CP029681.1_1278549_1278783_+	NA	NA|62aa|down_4|NZ_CP029681.1_1279404_1279590_+	NA	NA|117aa|down_5|NZ_CP029681.1_1280129_1280480_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_6|NZ_CP029681.1_1280633_1281131_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_7|NZ_CP029681.1_1281389_1281896_-	NA	NA|132aa|down_8|NZ_CP029681.1_1282568_1282964_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|24aa|down_9|NZ_CP029681.1_1282944_1283016_+	NA
GCF_003193785.1_ASM319378v1	NZ_CP029681	Staphylococcus aureus strain AR_0473 chromosome, complete genome	3	1298676-1298767	3	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	Orphan	CCTCTTTGATTTTTAATCATTAGA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	NA|32aa|up_5|NZ_CP029681.1_1291799_1291895_+,NA|36aa|down_3|NZ_CP029681.1_1303938_1304046_-,NA|359aa|down_8|NZ_CP029681.1_1307073_1308150_-	NA|272aa|up_9|NZ_CP029681.1_1286281_1287097_-	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|589aa|up_8|NZ_CP029681.1_1287096_1288863_-	PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|205aa|up_7|NZ_CP029681.1_1288914_1289529_-	cd03497, SQR_TypeB_1_TM, Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR	NA|594aa|up_6|NZ_CP029681.1_1289852_1291634_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|32aa|up_5|NZ_CP029681.1_1291799_1291895_+	NA	NA|105aa|up_4|NZ_CP029681.1_1291957_1292272_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|783aa|up_3|NZ_CP029681.1_1292444_1294793_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|571aa|up_2|NZ_CP029681.1_1294802_1296515_-	PRK08609, PRK08609, DNA polymerase/3'-5' exonuclease PolX	NA|174aa|up_1|NZ_CP029681.1_1296587_1297109_-	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only]	NA|89aa|up_0|NZ_CP029681.1_1297109_1297376_-	PRK14126, PRK14126, cell division protein ZapA; Provisional	NA|801aa|down_0|NZ_CP029681.1_1299118_1301521_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|353aa|down_1|NZ_CP029681.1_1301520_1302579_-	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|247aa|down_2|NZ_CP029681.1_1302958_1303699_-	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|36aa|down_3|NZ_CP029681.1_1303938_1304046_-	NA	NA|108aa|down_4|NZ_CP029681.1_1304082_1304406_-	PRK13312, PRK13312, staphylobilin-forming heme oxygenase IsdG	NA|245aa|down_5|NZ_CP029681.1_1304424_1305159_-	COG4509, COG4509, Uncharacterized protein conserved in bacteria [Function unknown]	NA|323aa|down_6|NZ_CP029681.1_1305220_1306189_-	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|293aa|down_7|NZ_CP029681.1_1306198_1307077_-	TIGR03659, heme_ABC_transporter_heme-binding_protein_isdE, heme ABC transporter, heme-binding protein isdE	NA|359aa|down_8|NZ_CP029681.1_1307073_1308150_-	NA	NA|228aa|down_9|NZ_CP029681.1_1308149_1308833_-	TIGR03656, IsdC, heme uptake protein IsdC
GCF_003193785.1_ASM319378v1	NZ_CP029681	Staphylococcus aureus strain AR_0473 chromosome, complete genome	4	1496043-1496121	4	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	Orphan	CCAGCCTCTGTGTTGGGGCCCCG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	NA,NA	NA|301aa|up_9|NZ_CP029681.1_1479990_1480893_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP029681.1_1481058_1484712_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP029681.1_1484712_1488189_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP029681.1_1488348_1488924_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP029681.1_1488939_1489464_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP029681.1_1489468_1490044_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP029681.1_1490368_1491700_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP029681.1_1492049_1493255_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP029681.1_1493244_1494624_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP029681.1_1494865_1495795_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP029681.1_1496245_1497490_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP029681.1_1497598_1498789_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP029681.1_1499096_1500224_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP029681.1_1500585_1500963_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP029681.1_1501377_1501971_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP029681.1_1502034_1502418_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP029681.1_1502548_1504954_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP029681.1_1504946_1505375_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_8|NZ_CP029681.1_1505386_1505716_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP029681.1_1505708_1507205_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_003193785.1_ASM319378v1	NZ_CP029681	Staphylococcus aureus strain AR_0473 chromosome, complete genome	5	1592543-1592620	5	CRISPRCasFinder	no	cas3	WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	Unclear	TGGCGGGGCCCCAACATAAAGAA	23	1	11	1592566-1592597|1592566-1592597|1592566-1592597|1592566-1592597|1592566-1592597|1592566-1592597|1592566-1592597|1592566-1592597|1592566-1592597|1592566-1592597|1592566-1592597	NZ_CP029681.1_577725-577694|NZ_CP029681.1_2049813-2049782|NZ_CP029681.1_2049868-2049837|NZ_CP029681.1_68912-68943|NZ_CP029681.1_416775-416806|NZ_CP029681.1_1586899-1586930|NZ_CP029681.1_1586957-1586988|NZ_CP029681.1_1587015-1587046|NZ_CP029681.1_1759023-1758992|NZ_CP029681.1_2253998-2253967|NZ_CP029681.1_2576153-2576122	NA	1	1	Unclear	WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	NA,NA|36aa|down_5|NZ_CP029681.1_1600060_1600168_-,NA|35aa|down_7|NZ_CP029681.1_1601600_1601705_-	NA|301aa|up_9|NZ_CP029681.1_1581330_1582233_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP029681.1_1582475_1583063_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP029681.1_1583626_1584571_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP029681.1_1584681_1585677_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP029681.1_1585673_1586585_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP029681.1_1587583_1588519_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP029681.1_1588585_1590025_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP029681.1_1590032_1590518_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP029681.1_1590525_1591365_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP029681.1_1591370_1592303_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP029681.1_1592908_1595755_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP029681.1_1595762_1597748_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP029681.1_1598016_1598253_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP029681.1_1598249_1598900_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP029681.1_1599073_1599913_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP029681.1_1600060_1600168_-	NA	NA|370aa|down_6|NZ_CP029681.1_1600321_1601432_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP029681.1_1601600_1601705_-	NA	NA|844aa|down_8|NZ_CP029681.1_1601746_1604278_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP029681.1_1604691_1605264_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_003193785.1_ASM319378v1	NZ_CP029681	Staphylococcus aureus strain AR_0473 chromosome, complete genome	6	2009840-2009942	6	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	NA|221aa|up_1|NZ_CP029681.1_2008086_2008749_+,NA|33aa|down_0|NZ_CP029681.1_2010617_2010716_-,NA|93aa|down_5|NZ_CP029681.1_2017079_2017358_+,NA|128aa|down_7|NZ_CP029681.1_2018312_2018696_+,NA|70aa|down_9|NZ_CP029681.1_2019520_2019730_+	NA|66aa|up_9|NZ_CP029681.1_1999817_2000015_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|208aa|up_8|NZ_CP029681.1_2000158_2000782_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|379aa|up_7|NZ_CP029681.1_2000877_2002014_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|514aa|up_6|NZ_CP029681.1_2002107_2003649_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP029681.1_2003673_2005140_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP029681.1_2005177_2006446_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP029681.1_2006445_2007024_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP029681.1_2007536_2007944_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP029681.1_2008086_2008749_+	NA	NA|319aa|up_0|NZ_CP029681.1_2008866_2009823_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|33aa|down_0|NZ_CP029681.1_2010617_2010716_-	NA	NA|463aa|down_1|NZ_CP029681.1_2010800_2012189_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP029681.1_2012268_2013024_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP029681.1_2013515_2014085_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP029681.1_2014100_2015624_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|93aa|down_5|NZ_CP029681.1_2017079_2017358_+	NA	NA|209aa|down_6|NZ_CP029681.1_2017430_2018057_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_7|NZ_CP029681.1_2018312_2018696_+	NA	NA|194aa|down_8|NZ_CP029681.1_2018761_2019343_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_9|NZ_CP029681.1_2019520_2019730_+	NA
GCF_003193785.1_ASM319378v1	NZ_CP029681	Staphylococcus aureus strain AR_0473 chromosome, complete genome	7	2150280-2150370	7	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	Orphan	TTCTACAGACAATGCAAGTTGGGGTGTGGGCCC	33	1	20	2150313-2150337|2150313-2150337|2150313-2150337|2150313-2150337|2150313-2150337|2150313-2150337|2150313-2150337|2150313-2150337|2150313-2150337|2150313-2150337|2150313-2150337|2150313-2150337|2150313-2150337|2150313-2150337|2150313-2150337|2150313-2150337|2150313-2150337|2150313-2150337|2150313-2150337|2150313-2150337	NZ_CP029681.1_79820-79844|NZ_CP029681.1_426112-426136|NZ_CP029681.1_577737-577713|NZ_CP029681.1_753622-753646|NZ_CP029681.1_977451-977475|NZ_CP029681.1_977509-977533|NZ_CP029681.1_1066121-1066097|NZ_CP029681.1_1376300-1376324|NZ_CP029681.1_1586887-1586911|NZ_CP029681.1_1586945-1586969|NZ_CP029681.1_1587003-1587027|NZ_CP029681.1_1587061-1587085|NZ_CP029681.1_1759035-1759011|NZ_CP029681.1_2049825-2049801|NZ_CP029681.1_2049880-2049856|NZ_CP029681.1_2254010-2253986|NZ_CP029681.1_2576165-2576141|NZ_CP029681.1_68900-68924|NZ_CP029681.1_1061607-1061631|NZ_CP029681.1_1579746-1579770	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	NA,NA|49aa|down_4|NZ_CP029681.1_2155953_2156100_-	NA|234aa|up_9|NZ_CP029681.1_2138405_2139107_-	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|148aa|up_8|NZ_CP029681.1_2139099_2139543_-	PRK04125, PRK04125, antiholin-like protein LrgA	NA|247aa|up_7|NZ_CP029681.1_2139655_2140396_-	PRK14084, PRK14084, DNA-binding response regulator	NA|580aa|up_6|NZ_CP029681.1_2140398_2142138_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|225aa|up_5|NZ_CP029681.1_2142396_2143071_-	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|574aa|up_4|NZ_CP029681.1_2143214_2144936_-	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|563aa|up_3|NZ_CP029681.1_2144968_2146657_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|342aa|up_2|NZ_CP029681.1_2146678_2147704_-	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase	NA|239aa|up_1|NZ_CP029681.1_2147696_2148413_-	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional	NA|390aa|up_0|NZ_CP029681.1_2148688_2149858_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|565aa|down_0|NZ_CP029681.1_2150908_2152603_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|342aa|down_1|NZ_CP029681.1_2152624_2153650_-	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase	NA|239aa|down_2|NZ_CP029681.1_2153642_2154359_-	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional	NA|348aa|down_3|NZ_CP029681.1_2154886_2155930_-	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|49aa|down_4|NZ_CP029681.1_2155953_2156100_-	NA	NA|352aa|down_5|NZ_CP029681.1_2156101_2157157_-	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family	NA|420aa|down_6|NZ_CP029681.1_2157174_2158434_-	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|93aa|down_7|NZ_CP029681.1_2158660_2158939_-	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|156aa|down_8|NZ_CP029681.1_2158961_2159429_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|699aa|down_9|NZ_CP029681.1_2159413_2161510_-	COG3711, BglG, Transcriptional antiterminator [Transcription]
GCF_003193785.1_ASM319378v1	NZ_CP029681	Staphylococcus aureus strain AR_0473 chromosome, complete genome	8	2351269-2351520	1,8,2	CRT,CRISPRCasFinder,PILER-CR	no	cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	Type III-B,Type III-D,Type III-A,Type III-C	AGTTCTCGTCCCCTCTTCTACGGGNGTAGTTATCGAAT,CTCGTCCCCTCTTCTACGGGGTAGTTATCGAAT,GAGTTCTCGTCCCCTCTTCTACGGGGTAGTTATCGAAT	38,33,38	0	0	NA	NA	NA:NA:NA	3,3,2	3	TypeIII-B,TypeIII-D,TypeIII-A,TypeIII-C	WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	NA|161aa|up_9|NZ_CP029681.1_2341080_2341563_-,NA|201aa|up_5|NZ_CP029681.1_2344624_2345227_-,NA|68aa|up_3|NZ_CP029681.1_2345780_2345984_-,NA	NA|161aa|up_9|NZ_CP029681.1_2341080_2341563_-	NA	NA|244aa|up_8|NZ_CP029681.1_2341718_2342450_-	PRK08317, PRK08317, hypothetical protein; Provisional	NA|185aa|up_7|NZ_CP029681.1_2342685_2343240_-	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator	NA|305aa|up_6|NZ_CP029681.1_2343418_2344333_+	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|201aa|up_5|NZ_CP029681.1_2344624_2345227_-	NA	NA|99aa|up_4|NZ_CP029681.1_2345435_2345732_-	COG3070, TfoX, Regulator of competence-specific genes [Transcription]	NA|68aa|up_3|NZ_CP029681.1_2345780_2345984_-	NA	NA|311aa|up_2|NZ_CP029681.1_2346346_2347279_+	COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]	NA|558aa|up_1|NZ_CP029681.1_2347525_2349199_-	TIGR02169, chromosome_segregation_protein_related_ptotein, chromosome segregation protein SMC, primarily archaeal type	NA|312aa|up_0|NZ_CP029681.1_2349191_2350127_-	pfam14130, DUF4297, Domain of unknown function (DUF4297)	cas6|245aa|down_0|NZ_CP029681.1_2351654_2352389_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	csm6|423aa|down_1|NZ_CP029681.1_2352385_2353654_-	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	csm5gr7|341aa|down_2|NZ_CP029681.1_2353653_2354676_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|303aa|down_3|NZ_CP029681.1_2354678_2355587_-	TIGR01903, Hypothetical_protein	csm3gr7|215aa|down_4|NZ_CP029681.1_2355597_2356242_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|142aa|down_5|NZ_CP029681.1_2356243_2356669_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|758aa|down_6|NZ_CP029681.1_2356671_2358945_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas2|102aa|down_7|NZ_CP029681.1_2358958_2359264_-	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas1|302aa|down_8|NZ_CP029681.1_2359263_2360169_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	NA|104aa|down_9|NZ_CP029681.1_2361546_2361858_+	pfam11867, DUF3387, Domain of unknown function (DUF3387)
GCF_003193785.1_ASM319378v1	NZ_CP029681	Staphylococcus aureus strain AR_0473 chromosome, complete genome	9	2360243-2361133	9,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL	WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	Type III-B,Type III-D,Type III-A,Type III-C	ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC,ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC,TTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	36,36,35	0	0	NA	NA	NA:NA:NA	12,12,6	12	TypeIII-B,TypeIII-D,TypeIII-A,TypeIII-C	WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	NA,NA|74aa|down_1|NZ_CP029681.1_2362149_2362371_-,NA|123aa|down_7|NZ_CP029681.1_2367255_2367624_-,NA|663aa|down_9|NZ_CP029681.1_2368920_2370909_-	NA|312aa|up_9|NZ_CP029681.1_2349191_2350127_-	pfam14130, DUF4297, Domain of unknown function (DUF4297)	cas6|245aa|up_8|NZ_CP029681.1_2351654_2352389_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	csm6|423aa|up_7|NZ_CP029681.1_2352385_2353654_-	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	csm5gr7|341aa|up_6|NZ_CP029681.1_2353653_2354676_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|303aa|up_5|NZ_CP029681.1_2354678_2355587_-	TIGR01903, Hypothetical_protein	csm3gr7|215aa|up_4|NZ_CP029681.1_2355597_2356242_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|142aa|up_3|NZ_CP029681.1_2356243_2356669_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|758aa|up_2|NZ_CP029681.1_2356671_2358945_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas2|102aa|up_1|NZ_CP029681.1_2358958_2359264_-	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas1|302aa|up_0|NZ_CP029681.1_2359263_2360169_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	NA|104aa|down_0|NZ_CP029681.1_2361546_2361858_+	pfam11867, DUF3387, Domain of unknown function (DUF3387)	NA|74aa|down_1|NZ_CP029681.1_2362149_2362371_-	NA	NA|168aa|down_2|NZ_CP029681.1_2362385_2362889_-	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|104aa|down_3|NZ_CP029681.1_2362903_2363215_-	pfam06124, DUF960, Staphylococcal protein of unknown function (DUF960)	NA|113aa|down_4|NZ_CP029681.1_2363308_2363647_-	pfam06106, SAUGI, S	NA|560aa|down_5|NZ_CP029681.1_2363735_2365415_-	smart00857, Resolvase, Resolvase, N terminal domain	NA|539aa|down_6|NZ_CP029681.1_2365639_2367256_-	COG3378, COG3378, Phage associated DNA primase [General function prediction only]	NA|123aa|down_7|NZ_CP029681.1_2367255_2367624_-	NA	NA|370aa|down_8|NZ_CP029681.1_2367616_2368726_-	PRK14975, PRK14975, bifunctional 3'-5' exonuclease/DNA polymerase; Provisional	NA|663aa|down_9|NZ_CP029681.1_2368920_2370909_-	NA
GCF_003193785.1_ASM319378v1	NZ_CP029681	Staphylococcus aureus strain AR_0473 chromosome, complete genome	10	2657036-2657169	4	PILER-CR	no		WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	NA|67aa|up_1|NZ_CP029681.1_2654221_2654422_+,NA|34aa|up_0|NZ_CP029681.1_2654470_2654572_+,NA|78aa|down_6|NZ_CP029681.1_2669765_2669999_+,NA|103aa|down_7|NZ_CP029681.1_2670105_2670414_-,NA|89aa|down_8|NZ_CP029681.1_2670557_2670824_-	NA|426aa|up_9|NZ_CP029681.1_2643784_2645062_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_8|NZ_CP029681.1_2645971_2647795_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_7|NZ_CP029681.1_2647933_2648350_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP029681.1_2648580_2649273_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_5|NZ_CP029681.1_2649437_2650202_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_4|NZ_CP029681.1_2650355_2651036_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP029681.1_2651059_2652613_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP029681.1_2652729_2654088_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_1|NZ_CP029681.1_2654221_2654422_+	NA	NA|34aa|up_0|NZ_CP029681.1_2654470_2654572_+	NA	NA|930aa|down_0|NZ_CP029681.1_2658319_2661109_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_1|NZ_CP029681.1_2661288_2662155_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_2|NZ_CP029681.1_2662365_2663109_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_3|NZ_CP029681.1_2663431_2663788_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|1372aa|down_4|NZ_CP029681.1_2664092_2668208_+	pfam18483, Bact_lectin, Bacterial lectin	NA|398aa|down_5|NZ_CP029681.1_2668591_2669785_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|78aa|down_6|NZ_CP029681.1_2669765_2669999_+	NA	NA|103aa|down_7|NZ_CP029681.1_2670105_2670414_-	NA	NA|89aa|down_8|NZ_CP029681.1_2670557_2670824_-	NA	NA|603aa|down_9|NZ_CP029681.1_2671107_2672916_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)
GCF_003193785.1_ASM319378v1	NZ_CP029681	Staphylococcus aureus strain AR_0473 chromosome, complete genome	11	2753191-2753288	10	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	Orphan	GCCTTTCTAGCTCATAAAATTCGCAGAAA	29	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	NA|35aa|up_0|NZ_CP029681.1_2752769_2752874_+,NA|35aa|down_2|NZ_CP029681.1_2755460_2755565_-	NA|453aa|up_9|NZ_CP029681.1_2742713_2744072_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|up_8|NZ_CP029681.1_2744073_2745081_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|up_7|NZ_CP029681.1_2745058_2746174_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|up_6|NZ_CP029681.1_2746184_2746877_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|up_5|NZ_CP029681.1_2746887_2747355_+	pfam06177, QueT, QueT transporter	NA|326aa|up_4|NZ_CP029681.1_2747406_2748384_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|up_3|NZ_CP029681.1_2748385_2749333_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|310aa|up_2|NZ_CP029681.1_2749900_2750830_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|437aa|up_1|NZ_CP029681.1_2751364_2752675_-	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|35aa|up_0|NZ_CP029681.1_2752769_2752874_+	NA	NA|289aa|down_0|NZ_CP029681.1_2753427_2754294_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|229aa|down_1|NZ_CP029681.1_2754620_2755307_+	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|35aa|down_2|NZ_CP029681.1_2755460_2755565_-	NA	NA|480aa|down_3|NZ_CP029681.1_2755738_2757178_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|260aa|down_4|NZ_CP029681.1_2757298_2758078_+	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|240aa|down_5|NZ_CP029681.1_2758058_2758778_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|down_6|NZ_CP029681.1_2758774_2759506_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|417aa|down_7|NZ_CP029681.1_2759602_2760853_-	pfam02388, FemAB, FemAB family	NA|121aa|down_8|NZ_CP029681.1_2761107_2761470_+	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|200aa|down_9|NZ_CP029681.1_2761488_2762088_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
