assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003193765.1_ASM319376v1	NZ_CP029652	Staphylococcus aureus strain AR_0471 chromosome, complete genome	1	1923001-1923134	1	PILER-CR	no		cas3,DinG,DEDDh,WYL,csa3	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,DEDDh,WYL,csa3	NA,NA|103aa|down_1|NZ_CP029652.1_1924767_1925076_-,NA|89aa|down_2|NZ_CP029652.1_1925215_1925482_-,NA|109aa|down_8|NZ_CP029652.1_1935262_1935589_+,NA|96aa|down_9|NZ_CP029652.1_1935591_1935879_+	NA|232aa|up_9|NZ_CP029652.1_1907369_1908065_-	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter	NA|204aa|up_8|NZ_CP029652.1_1908582_1909194_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_7|NZ_CP029652.1_1909740_1911018_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_6|NZ_CP029652.1_1911929_1913753_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_5|NZ_CP029652.1_1913891_1914308_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_4|NZ_CP029652.1_1914538_1915231_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_3|NZ_CP029652.1_1915395_1916160_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_2|NZ_CP029652.1_1916313_1916994_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_1|NZ_CP029652.1_1917017_1918571_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_0|NZ_CP029652.1_1918687_1920046_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|289aa|down_0|NZ_CP029652.1_1923774_1924641_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_CP029652.1_1924767_1925076_-	NA	NA|89aa|down_2|NZ_CP029652.1_1925215_1925482_-	NA	NA|603aa|down_3|NZ_CP029652.1_1925765_1927574_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_4|NZ_CP029652.1_1927705_1928098_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|954aa|down_5|NZ_CP029652.1_1928099_1930961_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|253aa|down_6|NZ_CP029652.1_1931266_1932025_+	pfam04507, DUF576, Csa1 family	NA|258aa|down_7|NZ_CP029652.1_1932136_1932910_+	pfam04507, DUF576, Csa1 family	NA|109aa|down_8|NZ_CP029652.1_1935262_1935589_+	NA	NA|96aa|down_9|NZ_CP029652.1_1935591_1935879_+	NA
GCF_003193765.1_ASM319376v1	NZ_CP029652	Staphylococcus aureus strain AR_0471 chromosome, complete genome	2	2159191-2159275	1	CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,csa3	Orphan	CAAGTTGGGGAACGGGGCCCCAACA	25	1	7	2159216-2159250|2159216-2159250|2159216-2159250|2159216-2159250|2159216-2159250|2159216-2159250|2159216-2159250	NZ_CP029652.1_522944-522910|NZ_CP029652.1_623348-623382|NZ_CP029652.1_828213-828247|NZ_CP029652.1_2170022-2170056|NZ_CP029652.1_2393631-2393597|NZ_CP029652.1_736389-736355|NZ_CP029652.1_2519118-2519152	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,csa3	NA,NA|57aa|down_0|NZ_CP029652.1_2159335_2159506_-,NA|84aa|down_5|NZ_CP029652.1_2162646_2162898_-,NA|106aa|down_8|NZ_CP029652.1_2168019_2168337_-,NA|55aa|down_9|NZ_CP029652.1_2168581_2168746_-	NA|202aa|up_9|NZ_CP029652.1_2152030_2152636_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP029652.1_2152803_2153808_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP029652.1_2153837_2154344_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP029652.1_2154345_2154840_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP029652.1_2154902_2156162_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP029652.1_2156158_2156644_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP029652.1_2156657_2157104_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP029652.1_2157109_2157343_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP029652.1_2157349_2157949_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP029652.1_2157968_2158991_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|NZ_CP029652.1_2159335_2159506_-	NA	NA|117aa|down_1|NZ_CP029652.1_2159631_2159982_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP029652.1_2160083_2161295_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP029652.1_2161287_2161728_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP029652.1_2161890_2162655_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP029652.1_2162646_2162898_-	NA	NA|422aa|down_6|NZ_CP029652.1_2163286_2164552_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP029652.1_2164668_2167836_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP029652.1_2168019_2168337_-	NA	NA|55aa|down_9|NZ_CP029652.1_2168581_2168746_-	NA
GCF_003193765.1_ASM319376v1	NZ_CP029652	Staphylococcus aureus strain AR_0471 chromosome, complete genome	3	2197728-2197860	2	CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,csa3	Orphan	GAAACCAATGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAG	44	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,csa3	NA,NA|61aa|down_0|NZ_CP029652.1_2198770_2198953_+,NA|67aa|down_1|NZ_CP029652.1_2198934_2199135_-,NA|197aa|down_9|NZ_CP029652.1_2205589_2206180_-	NA|130aa|up_9|NZ_CP029652.1_2189203_2189593_+	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|315aa|up_8|NZ_CP029652.1_2189667_2190612_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|123aa|up_7|NZ_CP029652.1_2190628_2190997_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|270aa|up_6|NZ_CP029652.1_2191534_2192344_+	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|287aa|up_5|NZ_CP029652.1_2192340_2193201_+	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|269aa|up_4|NZ_CP029652.1_2193190_2193997_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|268aa|up_3|NZ_CP029652.1_2194001_2194805_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|146aa|up_2|NZ_CP029652.1_2195044_2195482_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|133aa|up_1|NZ_CP029652.1_2195495_2195894_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|479aa|up_0|NZ_CP029652.1_2196242_2197679_+	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|61aa|down_0|NZ_CP029652.1_2198770_2198953_+	NA	NA|67aa|down_1|NZ_CP029652.1_2198934_2199135_-	NA	NA|555aa|down_2|NZ_CP029652.1_2199423_2201088_+	PRK08617, PRK08617, acetolactate synthase AlsS	NA|235aa|down_3|NZ_CP029652.1_2201124_2201829_+	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|142aa|down_4|NZ_CP029652.1_2202203_2202629_-	pfam03642, MAP, MAP domain	NA|272aa|down_5|NZ_CP029652.1_2202923_2203739_+	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|179aa|down_6|NZ_CP029652.1_2204048_2204585_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|168aa|down_7|NZ_CP029652.1_2204565_2205069_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|119aa|down_8|NZ_CP029652.1_2205177_2205534_-	pfam13627, LPAM_2, Prokaryotic lipoprotein-attachment site	NA|197aa|down_9|NZ_CP029652.1_2205589_2206180_-	NA
GCF_003193765.1_ASM319376v1	NZ_CP029652	Staphylococcus aureus strain AR_0471 chromosome, complete genome	4	2290135-2290223	3	CRISPRCasFinder	no	csa3	cas3,DinG,DEDDh,WYL,csa3	Type I-A	TGCATAAGAGCCCCTAACAACTAAAGTTTAAG	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,csa3	NA|31aa|up_0|NZ_CP029652.1_2289922_2290015_-,NA|364aa|down_0|NZ_CP029652.1_2290236_2291328_-,NA|77aa|down_5|NZ_CP029652.1_2295114_2295345_+	NA|311aa|up_9|NZ_CP029652.1_2269801_2270734_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_8|NZ_CP029652.1_2270760_2272116_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|up_7|NZ_CP029652.1_2280080_2281187_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_6|NZ_CP029652.1_2281186_2281621_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_5|NZ_CP029652.1_2281632_2283765_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|517aa|up_4|NZ_CP029652.1_2283799_2285350_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_3|NZ_CP029652.1_2286030_2287836_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_2|NZ_CP029652.1_2288068_2288851_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_1|NZ_CP029652.1_2288918_2289776_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_0|NZ_CP029652.1_2289922_2290015_-	NA	NA|364aa|down_0|NZ_CP029652.1_2290236_2291328_-	NA	NA|326aa|down_1|NZ_CP029652.1_2291593_2292571_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP029652.1_2292572_2292893_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP029652.1_2293044_2293710_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP029652.1_2294145_2295084_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP029652.1_2295114_2295345_+	NA	NA|458aa|down_6|NZ_CP029652.1_2296018_2297392_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP029652.1_2297849_2298263_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP029652.1_2298462_2298906_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP029652.1_2299026_2299737_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
