The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP029678	Staphylococcus aureus strain AR_0216 chromosome, complete genome	2921067	783891	791711	2921067		Hokovirus(16.67%)	10	NA	NA
WP_000244412.1|783891_784947_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|784946_785633_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|785607_786081_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|786422_786863_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|787142_787727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|787825_788539_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|788542_788962_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|788963_789632_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|789982_790576_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|790559_791711_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 2
NZ_CP029678	Staphylococcus aureus strain AR_0216 chromosome, complete genome	2921067	803683	818414	2921067		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|803683_804742_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197273.1|805092_805635_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|806258_807176_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|807266_807368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193752.1|807445_808951_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|809291_809792_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|809811_810678_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|811478_811877_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|811839_813945_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|814062_815034_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|815547_815703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|815741_816713_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|816699_817656_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|817652_818414_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_CP029678	Staphylococcus aureus strain AR_0216 chromosome, complete genome	2921067	897124	964377	2921067	holin,terminase,portal,tail,plate,integrase,head,capsid	Staphylococcus_phage(60.47%)	95	921092:921151	964850:964939
WP_000571218.1|897124_898150_+	methionine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	3.9e-26
WP_000520233.1|898142_898838_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732326.1|898855_899677_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000266158.1|899819_901040_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	2.9e-100
WP_000734020.1|901127_901856_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	31.8	1.2e-21
WP_001033321.1|901879_902608_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	34.1	1.6e-26
WP_000281658.1|902624_903083_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2I6PEK4	Staphylococcus_phage	82.1	4.3e-65
WP_001260004.1|903094_903427_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000243849.1|903619_903883_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	4.1e-36
WP_000091732.1|903875_904148_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	88.9	4.8e-40
WP_000784892.1|904159_904333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|904299_904503_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000403840.1|904504_904888_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
WP_001103959.1|904888_905137_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	58.6	1.4e-22
WP_000985235.1|905228_907601_+	primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	9.8e-137
WP_001081424.1|908271_908616_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	9.4e-41
WP_000884055.1|908840_909047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000657538.1|909033_910092_+|capsid	phage capsid protein	capsid	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
WP_000253084.1|910275_910767_+	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	40.5	7.9e-25
WP_086034110.1|910763_910919_+|terminase	terminase	terminase	A0A1W6JQF0	Staphylococcus_phage	92.0	3.1e-20
WP_000801979.1|911195_912164_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
WP_001035618.1|912398_912953_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	4.8e-71
WP_000752917.1|913986_914181_+	CsbD family protein	NA	NA	NA	NA	NA
WP_001183858.1|914413_915265_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000168845.1|915592_916354_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
WP_000205572.1|916451_917759_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_001006454.1|917864_919115_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.5	1.4e-110
WP_001010508.1|919104_919569_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|919719_921117_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
921092:921151	attL	TCGAAATGGAAGGTAGTATTGGATAGCTTTAAACCGCGTTGTTAAGCCATTCTTGACTTC	NA	NA	NA	NA
WP_001145725.1|921184_922234_-|integrase	site-specific integrase	integrase	A0A0F6N3M4	Staphylococcus_phage	100.0	9.1e-204
WP_000826264.1|922295_922811_-	hypothetical protein	NA	I1W624	Staphylococcus_phage	100.0	1.5e-37
WP_110179714.1|922814_923315_-	hypothetical protein	NA	B7T094	Staphylococcus_virus	99.4	2.6e-71
WP_000446800.1|923367_923553_-	hypothetical protein	NA	E9LT71	Staphylococcus_phage	100.0	4.3e-24
WP_024936996.1|923613_923799_-	hypothetical protein	NA	Q9G041	Staphylococcus_virus	98.4	5.1e-25
WP_000094091.1|923953_924664_-	helix-turn-helix transcriptional regulator	NA	Q9MBT4	Staphylococcus_prophage	100.0	2.6e-130
WP_000548576.1|924834_925074_+	helix-turn-helix transcriptional regulator	NA	Q9MBT3	Staphylococcus_prophage	100.0	8.0e-39
WP_000435355.1|925086_925530_+	hypothetical protein	NA	A0A0H3U2S6	Staphylococcus_phage	99.3	2.0e-75
WP_000939498.1|925544_925688_+	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_000642492.1|925677_925887_-	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
WP_031807112.1|925943_926657_+	antirepressor	NA	A0A059T7N7	Staphylococcus_phage	97.9	2.6e-125
WP_000066019.1|926758_926920_+	DUF1270 family protein	NA	Q4ZB72	Staphylococcus_virus	100.0	2.5e-20
WP_031890781.1|927011_927272_+	DUF1108 family protein	NA	A9CR59	Staphylococcus_phage	98.8	9.9e-43
WP_000002517.1|927286_927766_+	siphovirus Gp157 family protein	NA	Q9MBS3	Staphylococcus_prophage	100.0	8.1e-83
WP_001043063.1|927765_928404_+	ERF family protein	NA	Q9MBS2	Staphylococcus_prophage	100.0	1.7e-115
WP_000934783.1|928403_928832_+	single-stranded DNA-binding protein	NA	A0A2H4JHI1	uncultured_Caudovirales_phage	93.0	1.2e-53
WP_015977703.1|928845_929520_+	DUF968 domain-containing protein	NA	Q4ZD97	Staphylococcus_virus	100.0	2.8e-129
WP_000371250.1|929625_930483_-	DUF4393 domain-containing protein	NA	Q4ZBL8	Staphylococcus_phage	100.0	9.5e-159
WP_110179715.1|930547_931303_+	replication protein	NA	W5R8N2	Staphylococcus_phage	98.0	2.6e-115
WP_000803065.1|931312_932092_+	ATP-binding protein	NA	W5RAN3	Staphylococcus_phage	100.0	1.2e-144
WP_001123673.1|932259_932481_+	DUF3269 family protein	NA	A7TWN4	Staphylococcus_phage	100.0	1.3e-35
WP_000049784.1|932491_932896_+	DUF1064 domain-containing protein	NA	A7TWN5	Staphylococcus_phage	100.0	7.1e-72
WP_001187236.1|932900_933086_+	DUF3113 family protein	NA	A0A068A236	Staphylococcus_phage	95.1	7.8e-26
WP_000022736.1|933448_933703_+	DUF3310 domain-containing protein	NA	Q6R831	Staphylococcus_virus	100.0	1.3e-42
WP_060474161.1|933702_933951_+	hypothetical protein	NA	A0A2K9VBX5	Staphylococcus_phage	100.0	1.2e-40
WP_031885233.1|933964_934369_+	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	98.5	1.2e-71
WP_000979209.1|934365_934713_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_110179716.1|935010_935259_+	DUF1024 family protein	NA	A0A2K9VBU0	Staphylococcus_phage	97.6	1.6e-37
WP_000185666.1|935251_935782_+	hypothetical protein	NA	I1W653	Staphylococcus_phage	98.3	3.5e-95
WP_001613442.1|935818_936106_+	DUF1381 domain-containing protein	NA	Q4ZAB6	Staphylococcus_virus	96.8	4.4e-44
WP_000608276.1|936098_936335_+	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	94.9	2.0e-34
WP_031925048.1|936327_936714_+	phage protein	NA	Q4ZBK1	Staphylococcus_phage	91.4	1.6e-60
WP_031925049.1|936710_936884_+	transcriptional regulator	NA	A9CR97	Staphylococcus_phage	98.2	7.5e-23
WP_000989998.1|936884_937031_+	hypothetical protein	NA	A0A059T5A8	Staphylococcus_phage	100.0	2.2e-15
WP_000162701.1|937054_937477_+	RinA family phage transcriptional activator	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
WP_001038245.1|937664_938159_+|terminase	terminase small subunit	terminase	A0A0F6N3K6	Staphylococcus_phage	99.4	2.3e-88
WP_000273012.1|938161_939457_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0F6N3L3	Staphylococcus_phage	99.3	2.8e-255
WP_110179717.1|939467_941003_+|portal	phage portal protein	portal	A1KX25	Staphylococcus_virus	99.2	4.6e-289
WP_031896231.1|941009_942005_+|capsid	minor capsid protein	capsid	E0Y3K7	Staphylococcus_virus	98.5	4.2e-182
WP_000072207.1|942077_942248_+	hypothetical protein	NA	Q4ZDF2	Staphylococcus_virus	100.0	3.3e-23
WP_000354305.1|942382_942997_+	DUF4355 domain-containing protein	NA	I1W646	Staphylococcus_phage	100.0	2.9e-40
WP_015977968.1|943010_943985_+|capsid	phage major capsid protein	capsid	Q4ZDM8	Staphylococcus_virus	100.0	2.2e-183
WP_031771634.1|944006_944294_+	phage protein	NA	Q8SDU4	Staphylococcus_phage	98.9	1.4e-45
WP_031922472.1|944302_944635_+|head,tail	phage head-tail connector protein	head,tail	E0Y3L2	Staphylococcus_virus	99.1	1.6e-53
WP_001268302.1|944631_944934_+	hypothetical protein	NA	A4ZFB6	Staphylococcus_virus	95.0	1.3e-49
WP_001017815.1|944933_945281_+	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_000188638.1|945292_945676_+	hypothetical protein	NA	E0Y3L5	Staphylococcus_virus	97.6	1.7e-67
WP_110179718.1|945694_946276_+|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	99.5	2.4e-105
WP_001100161.1|946338_946704_+	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
WP_000105584.1|946733_947078_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_110179719.1|947094_950562_+	hypothetical protein	NA	Q4ZDU6	Staphylococcus_virus	97.7	9.8e-271
WP_000350677.1|950574_951522_+|tail	phage tail family protein	tail	I1W635	Staphylococcus_phage	99.7	4.7e-183
WP_032099401.1|951530_953432_+	peptidase	NA	Q4ZDD8	Staphylococcus_virus	99.8	0.0e+00
WP_000369015.1|953446_955357_+	hypothetical protein	NA	A0EWM6	Staphylococcus_virus	100.0	0.0e+00
WP_072473129.1|955356_957180_+|plate	BppU family phage baseplate upper protein	plate	Q4ZBH7	Staphylococcus_virus	99.8	0.0e+00
WP_000705896.1|957179_957557_+	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	100.0	1.5e-60
WP_000782200.1|957559_957733_+	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_031873796.1|957773_958073_+	DUF2951 domain-containing protein	NA	A0A0F6N3M6	Staphylococcus_phage	99.0	1.3e-46
WP_110179720.1|958209_960108_+	CHAP domain-containing protein	NA	E0Y3M7	Staphylococcus_virus	99.7	0.0e+00
WP_000276643.1|960120_961293_+|plate	BppU family phage baseplate upper protein	plate	A0EWN2	Staphylococcus_virus	100.0	8.4e-198
WP_000398878.1|961298_961694_+	hypothetical protein	NA	Q4ZBP5	Staphylococcus_phage	100.0	2.7e-68
WP_064127776.1|961749_962187_+|holin	phage holin	holin	A0EWV0	Staphylococcus_virus	99.3	2.0e-72
WP_072328432.1|962167_963613_+	CHAP domain-containing protein	NA	A0EWV1	Staphylococcus_virus	99.2	3.4e-294
WP_001788502.1|963856_964009_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_000139423.1|964079_964190_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_000382163.1|964176_964377_+	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
964850:964939	attR	TCGAAATGGAAGGTAGTATTGGATAGCTTTAAACCGCGTTGTTAAGCCATTCTTGACTTCCGAAAATGGCTATTGATACCATTTTGATAC	NA	NA	NA	NA
>prophage 4
NZ_CP029678	Staphylococcus aureus strain AR_0216 chromosome, complete genome	2921067	1121027	1129500	2921067		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1121027_1121510_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|1121496_1122621_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1122624_1123329_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1123328_1123592_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1123593_1124265_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|1124257_1126447_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|1126425_1127910_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030812.1|1127902_1128931_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|1128933_1129500_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 5
NZ_CP029678	Staphylococcus aureus strain AR_0216 chromosome, complete genome	2921067	1571273	1658511	2921067	holin,tail,portal,terminase,plate,protease,tRNA,integrase,head,capsid	Staphylococcus_phage(84.21%)	106	1607636:1607656	1653529:1653549
WP_000858789.1|1571273_1572566_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_031833723.1|1572887_1575581_-	ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049919.1|1575604_1576576_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361544.1|1576562_1577765_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_000690027.1|1577769_1578912_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1579152_1579470_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1579806_1580487_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000152734.1|1580558_1581146_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000004947.1|1581135_1581711_-	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_011443634.1|1581724_1582828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245895.1|1582975_1584274_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776323.1|1584283_1585348_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269929.1|1585373_1586540_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000789522.1|1586925_1587126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1587334_1587784_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001817755.1|1587875_1588820_-	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1588836_1589562_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450553.1|1589564_1590137_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1590567_1590840_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161738.1|1591010_1592009_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165536.1|1592025_1593336_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133954.1|1593557_1594733_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001789944.1|1594989_1595181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001789945.1|1595297_1595414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644391.1|1595444_1596104_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681756.1|1596180_1597149_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1597263_1598250_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001789943.1|1598410_1598527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069282.1|1598651_1600112_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902119.1|1600264_1601644_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_001163801.1|1601633_1602587_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001151997.1|1602694_1602943_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186912.1|1603048_1603594_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001789947.1|1603872_1603992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000913219.1|1604190_1605105_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033757.1|1605119_1605326_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000472936.1|1605318_1606257_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476873.1|1606313_1607231_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_061390271.1|1607321_1607573_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.4e-25
1607636:1607656	attL	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
WP_024937002.1|1607755_1608739_-	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_000239545.1|1608734_1609673_-	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PER8	Staphylococcus_phage	100.0	3.7e-180
WP_000909220.1|1610062_1611517_-	CHAP domain-containing protein	NA	A0A2I6PET7	Staphylococcus_phage	100.0	5.7e-289
WP_000339146.1|1611527_1611830_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|1611965_1612265_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|1612310_1612475_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1612467_1612857_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067127.1|1612856_1614323_-|plate	BppU family phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_000429558.1|1614322_1616233_-	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|1616248_1616539_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|1616538_1618122_-	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|1618130_1618955_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_001003408.1|1618954_1625155_-|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	99.7	0.0e+00
WP_000438833.1|1625168_1625327_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|1625368_1625719_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|1625776_1626232_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807536.1|1626323_1626965_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023806.1|1626999_1627395_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000110023.1|1627395_1627797_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_000395498.1|1627793_1628126_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|1628137_1628416_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142734.1|1628484_1629648_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000061866.1|1629659_1630433_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001100664.1|1630416_1631655_-|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
WP_000153540.1|1631659_1633351_-|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
WP_000778933.1|1633340_1633646_-|terminase	terminase	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000160686.1|1633772_1634087_-	HNH endonuclease	NA	A0A2I6PEN4	Staphylococcus_phage	100.0	5.0e-57
WP_000528512.1|1634243_1634681_-	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
WP_001801648.1|1634693_1636061_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	3.0e-263
WP_001548892.1|1636041_1636332_-	VRR-NUC domain-containing protein	NA	A0A2I6PE31	Staphylococcus_phage	100.0	6.5e-51
WP_001801650.1|1636465_1636564_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_000884870.1|1636672_1639120_-	hypothetical protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_000265252.1|1639407_1639608_-	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000595263.1|1639675_1639828_-	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000592202.1|1639824_1640211_-	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
WP_000608275.1|1640203_1640440_-	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
WP_000141180.1|1640432_1640636_-	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_000195794.1|1640632_1640839_-	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
WP_000185671.1|1640875_1641412_-	hypothetical protein	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
WP_001065039.1|1641404_1641653_-	DUF1024 family protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
WP_000132194.1|1641667_1641910_-	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
WP_000235324.1|1641924_1642125_-	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_000022728.1|1642127_1642385_-	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
WP_000113974.1|1642384_1642786_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_001164629.1|1642785_1642971_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001801657.1|1642983_1644936_-	DNA polymerase	NA	A0A2I6PEL4	Staphylococcus_phage	100.0	0.0e+00
WP_000645048.1|1645003_1645561_-	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_000762552.1|1645586_1646753_-	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
WP_000985979.1|1646749_1647112_-	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
WP_000291481.1|1647125_1647386_-	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	3.4e-43
WP_000163431.1|1647390_1647693_-	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
WP_000829612.1|1647685_1648003_-	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
WP_001124198.1|1648268_1648532_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001036299.1|1648556_1648772_-	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001548903.1|1648818_1649058_+	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	100.0	6.7e-38
WP_001115060.1|1649314_1649506_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_000429766.1|1649666_1649996_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_000525001.1|1650008_1650470_+	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	98.7	2.9e-85
WP_000755722.1|1650487_1650922_+	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	96.5	3.6e-21
WP_000449655.1|1650950_1651346_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_001795334.1|1651435_1651582_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000191466.1|1651578_1652193_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_000264751.1|1652318_1653524_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_001548909.1|1653566_1654721_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	97.7	3.9e-115
1653529:1653549	attR	AATCCGCCCTTTTTTTGCCCT	NA	NA	NA	NA
WP_001033767.1|1654747_1655593_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001548912.1|1655585_1656515_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987769.1|1656759_1658511_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
>prophage 6
NZ_CP029678	Staphylococcus aureus strain AR_0216 chromosome, complete genome	2921067	1714342	1722647	2921067	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1714342_1715128_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1715253_1716144_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|1716153_1717500_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|1717613_1718714_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|1718716_1719394_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_110179728.1|1719508_1720624_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|1720847_1722647_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 7
NZ_CP029678	Staphylococcus aureus strain AR_0216 chromosome, complete genome	2921067	1791784	1800827	2921067	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1791784_1792303_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1792324_1794598_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1794800_1797080_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1797354_1797615_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1797633_1798773_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1798795_1799821_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1799822_1800827_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NZ_CP029678	Staphylococcus aureus strain AR_0216 chromosome, complete genome	2921067	1926283	2005615	2921067	transposase,protease,tRNA	Staphylococcus_phage(96.61%)	75	NA	NA
WP_001050548.1|1926283_1932844_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
WP_000836465.1|1933169_1933481_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001108732.1|1933502_1935917_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1936207_1937389_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1937498_1938452_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1938448_1939012_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1939131_1939533_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1941111_1941939_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1941941_1942061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1942172_1943174_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1943295_1943760_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1943772_1944954_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1944964_1945597_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000384181.1|1945603_1946635_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
WP_001261677.1|1947127_1948630_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1949152_1949467_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1949466_1950759_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1950776_1951172_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1951466_1952321_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1952596_1952821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1953019_1953490_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1953602_1954046_+	competence protein ComK	NA	NA	NA	NA	NA
WP_031833732.1|1954032_1954476_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	84.4	8.6e-55
WP_001168904.1|1954771_1955407_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096459.1|1955846_1956560_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1956819_1957122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200541.1|1957377_1957743_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	1.4e-58
WP_000623471.1|1957739_1958093_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453320.1|1960175_1961009_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|1961220_1962129_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1962253_1963447_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1963817_1965410_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_002868962.1|1966405_1967152_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|1967156_1967630_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1967695_1967953_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|1967949_1968951_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|1968955_1970434_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|1970592_1971048_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_001795535.1|1971350_1972001_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070653.1|1972081_1973077_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000669037.1|1973152_1973308_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	96.9	4.7e-08
WP_000188802.1|1973308_1973779_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	80.1	7.0e-63
WP_000627551.1|1973819_1974164_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|1974261_1974813_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1975030_1975672_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1975785_1975971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1975972_1976149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1976159_1976543_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1977146_1977290_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|1977492_1977588_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|1977710_1977812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002868972.1|1978159_1978519_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000831218.1|1979057_1983170_-	SMEK domain-containing protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_000072576.1|1984019_1985219_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_011443644.1|1985211_1986951_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	4.4e-288
WP_001791797.1|1986931_1987066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1987130_1987850_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|1988000_1988717_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|1988818_1988926_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1988874_1989594_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038867.1|1989714_1990434_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1990491_1991214_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039435.1|1991338_1992046_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001092763.1|1993009_1993576_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_000586140.1|1994049_1994748_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1994744_1995506_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1995502_1996195_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1996217_1997591_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1997600_1998119_-	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1998134_1999379_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_001092605.1|1999371_2002365_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000416756.1|2002429_2002573_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|2003309_2003453_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|2003694_2004678_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000473596.1|2004679_2005615_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
>prophage 9
NZ_CP029678	Staphylococcus aureus strain AR_0216 chromosome, complete genome	2921067	2090741	2190981	2921067	holin,tail,portal,terminase,protease,tRNA,integrase,head,capsid	Staphylococcus_phage(88.75%)	120	2152167:2152184	2177098:2177115
WP_000027928.1|2090741_2092199_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|2092200_2092503_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957015.1|2092869_2094408_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831698.1|2094496_2095696_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774565.1|2095708_2097712_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992921.1|2097715_2099908_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272069.1|2099904_2100597_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2100768_2101071_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2101179_2102475_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827748.1|2103335_2104502_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2104532_2104859_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2105150_2105324_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011538.1|2105304_2105907_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040873.1|2106177_2106999_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000284431.1|2106991_2108461_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000897635.1|2108644_2109721_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177817.1|2109740_2110535_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2110606_2110714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323167.1|2110724_2112287_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275730.1|2112491_2113589_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000149686.1|2113960_2114521_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2114573_2115503_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|2115697_2115871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021214.1|2115922_2117302_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|2117421_2118450_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2118719_2119121_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2119693_2119867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188077.1|2120317_2121358_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2121414_2122257_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2122253_2122811_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2122870_2123395_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2123515_2124079_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2124144_2124885_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2124884_2125757_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|2125753_2126434_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991302.1|2126434_2127331_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2127327_2127708_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2127971_2128148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2128390_2128489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|2128688_2129975_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001549158.1|2130599_2132354_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|2133311_2133491_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2133801_2134062_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2134114_2134465_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|2135149_2135599_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_020444758.1|2135693_2136152_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000919350.1|2136678_2137170_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|2137360_2138116_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2138127_2138382_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|2138433_2138541_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2138593_2138770_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|2138919_2139216_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|2139273_2139561_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|2139607_2139760_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582165.1|2139749_2143535_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_000567394.1|2143550_2145035_-|tail	phage tail protein	tail	A0A0H3U501	Staphylococcus_phage	100.0	2.0e-297
WP_001549166.1|2145031_2149561_-|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	95.0	0.0e+00
WP_001096354.1|2149805_2150156_-	hypothetical protein	NA	A0A0H3U503	Staphylococcus_phage	100.0	1.3e-58
WP_094969769.1|2150205_2150445_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	94.6	4.0e-30
WP_000260578.1|2150471_2151116_-|tail	phage tail protein	tail	A0A0H3U4E6	Staphylococcus_phage	100.0	6.5e-120
WP_000565500.1|2151119_2151524_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	95.5	1.4e-67
WP_000114229.1|2151520_2151925_-	hypothetical protein	NA	A0A0H3U2V1	Staphylococcus_phage	100.0	8.7e-70
WP_000755150.1|2151921_2152284_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2152167:2152184	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|2152267_2152552_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2152541_2152826_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|2152845_2153991_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|2154014_2154752_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|2154735_2155923_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|2155938_2157600_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2157596_2157941_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2158070_2158370_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|2158601_2159018_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|2159045_2159246_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000595265.1|2159245_2159395_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|2159391_2159778_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|2159774_2159981_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282074.1|2159977_2160223_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000181819.1|2160259_2160793_-	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
WP_000700108.1|2160785_2161028_-	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_001065101.1|2161017_2161254_-	DUF1024 family protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
WP_001549172.1|2161246_2161618_-	hypothetical protein	NA	A0A0H3U4X7	Staphylococcus_phage	97.3	4.7e-54
WP_000131383.1|2161626_2161869_-	hypothetical protein	NA	A0A0H3U4B0	Staphylococcus_phage	100.0	1.1e-40
WP_000101288.1|2161872_2162241_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000401977.1|2162253_2162658_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
WP_000338530.1|2162666_2162885_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148333.1|2162891_2163785_-	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000934753.1|2163814_2164285_-	single-stranded DNA-binding protein	NA	A0A0H3U4B5	Staphylococcus_phage	100.0	4.4e-81
WP_071665632.1|2164285_2164903_-	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
WP_000138475.1|2164983_2165904_-	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_000700561.1|2165905_2167849_-	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	94.7	0.0e+00
WP_001205732.1|2167857_2168121_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291513.1|2168129_2168390_-	DUF1108 family protein	NA	A0A0H3U2T6	Staphylococcus_phage	100.0	6.8e-44
WP_001549178.1|2168429_2168690_-	DUF2482 family protein	NA	A0A0H3U2W4	Staphylococcus_phage	100.0	9.3e-41
WP_001285960.1|2168784_2168946_-	DUF1270 domain-containing protein	NA	A0A0H3U4Y7	Staphylococcus_phage	100.0	3.8e-21
WP_001120199.1|2168942_2169263_-	DUF771 domain-containing protein	NA	A0A0H3U4C3	Staphylococcus_phage	100.0	1.5e-56
WP_000549548.1|2169321_2169552_+	hypothetical protein	NA	A0A0H3U2T9	Staphylococcus_phage	100.0	9.4e-37
WP_001148642.1|2169740_2170493_-	oxidoreductase	NA	A0A0H3U319	Staphylococcus_phage	100.0	5.6e-139
WP_000180411.1|2170543_2170873_+	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	100.0	4.6e-53
WP_001025404.1|2170861_2171077_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854072.1|2171092_2171356_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001801500.1|2171352_2171526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|2171488_2172202_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|2172217_2173150_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|2173155_2173497_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705246.1|2173700_2173883_+	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
WP_001549185.1|2173960_2174674_+	toxin MazF	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
WP_000857199.1|2174864_2175902_+|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	3.8e-178
WP_000595324.1|2177020_2178037_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
2177098:2177115	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791407.1|2178058_2179114_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206639.1|2179548_2180772_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000812010.1|2181143_2181989_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000825510.1|2182050_2182962_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045079.1|2183122_2184430_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000022887.1|2185282_2185726_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001797573.1|2185890_2186268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293058.1|2186585_2187176_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
WP_000128898.1|2187172_2187385_-	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
WP_000240645.1|2188086_2189703_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2189778_2190063_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|2190237_2190981_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
