assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003193665.1_ASM319366v1	NZ_CP029649	Staphylococcus aureus strain AR_0472 chromosome, complete genome	1	649777-649862	1	CRISPRCasFinder	no		cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	4	649807-649832|649807-649832|649807-649832|649807-649832	NZ_CP029649.1_439864-439889|NZ_CP029649.1_918726-918701|NZ_CP029649.1_869972-869997|NZ_CP029649.1_1836487-1836462	NA	1	1	Orphan	cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	NA|76aa|up_6|NZ_CP029649.1_642575_642803_-,NA|75aa|down_0|NZ_CP029649.1_650045_650270_-,NA|49aa|down_1|NZ_CP029649.1_650226_650373_-,NA|78aa|down_3|NZ_CP029649.1_652481_652715_+,NA|62aa|down_4|NZ_CP029649.1_653336_653522_+,NA|169aa|down_7|NZ_CP029649.1_655321_655828_-,NA|24aa|down_9|NZ_CP029649.1_656876_656948_+	NA|45aa|up_9|NZ_CP029649.1_637870_638005_-	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|63aa|up_8|NZ_CP029649.1_640886_641075_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|316aa|up_7|NZ_CP029649.1_641323_642271_+	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|76aa|up_6|NZ_CP029649.1_642575_642803_-	NA	NA|497aa|up_5|NZ_CP029649.1_643109_644600_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|311aa|up_4|NZ_CP029649.1_644837_645770_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_3|NZ_CP029649.1_645792_646794_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_2|NZ_CP029649.1_647231_647957_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_1|NZ_CP029649.1_648051_648777_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_0|NZ_CP029649.1_648884_649601_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|down_0|NZ_CP029649.1_650045_650270_-	NA	NA|49aa|down_1|NZ_CP029649.1_650226_650373_-	NA	NA|320aa|down_2|NZ_CP029649.1_651045_652005_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|down_3|NZ_CP029649.1_652481_652715_+	NA	NA|62aa|down_4|NZ_CP029649.1_653336_653522_+	NA	NA|117aa|down_5|NZ_CP029649.1_654061_654412_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_6|NZ_CP029649.1_654565_655063_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_7|NZ_CP029649.1_655321_655828_-	NA	NA|132aa|down_8|NZ_CP029649.1_656500_656896_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|24aa|down_9|NZ_CP029649.1_656876_656948_+	NA
GCF_003193665.1_ASM319366v1	NZ_CP029649	Staphylococcus aureus strain AR_0472 chromosome, complete genome	2	672608-672699	2	CRISPRCasFinder	no		cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	Orphan	CCTCTTTGATTTTTAATCATTAGA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	NA|32aa|up_5|NZ_CP029649.1_665731_665827_+,NA|36aa|down_3|NZ_CP029649.1_677870_677978_-,NA|359aa|down_8|NZ_CP029649.1_681005_682082_-	NA|272aa|up_9|NZ_CP029649.1_660213_661029_-	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|589aa|up_8|NZ_CP029649.1_661028_662795_-	PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|205aa|up_7|NZ_CP029649.1_662846_663461_-	cd03497, SQR_TypeB_1_TM, Succinate:quinone oxidoreductase (SQR) Type B subfamily 1, transmembrane subunit; composed of proteins similar to Bacillus subtilis SQR	NA|594aa|up_6|NZ_CP029649.1_663784_665566_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|32aa|up_5|NZ_CP029649.1_665731_665827_+	NA	NA|105aa|up_4|NZ_CP029649.1_665889_666204_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|783aa|up_3|NZ_CP029649.1_666376_668725_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|571aa|up_2|NZ_CP029649.1_668734_670447_-	PRK08609, PRK08609, DNA polymerase/3'-5' exonuclease PolX	NA|174aa|up_1|NZ_CP029649.1_670519_671041_-	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only]	NA|89aa|up_0|NZ_CP029649.1_671041_671308_-	PRK14126, PRK14126, cell division protein ZapA; Provisional	NA|801aa|down_0|NZ_CP029649.1_673050_675453_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|353aa|down_1|NZ_CP029649.1_675452_676511_-	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|247aa|down_2|NZ_CP029649.1_676890_677631_-	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|36aa|down_3|NZ_CP029649.1_677870_677978_-	NA	NA|108aa|down_4|NZ_CP029649.1_678014_678338_-	PRK13312, PRK13312, staphylobilin-forming heme oxygenase IsdG	NA|245aa|down_5|NZ_CP029649.1_678356_679091_-	COG4509, COG4509, Uncharacterized protein conserved in bacteria [Function unknown]	NA|323aa|down_6|NZ_CP029649.1_679152_680121_-	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]	NA|293aa|down_7|NZ_CP029649.1_680130_681009_-	TIGR03659, heme_ABC_transporter_heme-binding_protein_isdE, heme ABC transporter, heme-binding protein isdE	NA|359aa|down_8|NZ_CP029649.1_681005_682082_-	NA	NA|228aa|down_9|NZ_CP029649.1_682081_682765_-	TIGR03656, IsdC, heme uptake protein IsdC
GCF_003193665.1_ASM319366v1	NZ_CP029649	Staphylococcus aureus strain AR_0472 chromosome, complete genome	3	869975-870053	3	CRISPRCasFinder	no		cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	Orphan	CCAGCCTCTGTGTTGGGGCCCCG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	NA,NA	NA|301aa|up_9|NZ_CP029649.1_853922_854825_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP029649.1_854990_858644_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP029649.1_858644_862121_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP029649.1_862280_862856_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP029649.1_862871_863396_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP029649.1_863400_863976_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP029649.1_864300_865632_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP029649.1_865981_867187_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP029649.1_867176_868556_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP029649.1_868797_869727_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP029649.1_870177_871422_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP029649.1_871530_872721_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP029649.1_873028_874156_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP029649.1_874517_874895_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP029649.1_875309_875903_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP029649.1_875966_876350_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP029649.1_876480_878886_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP029649.1_878878_879307_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_8|NZ_CP029649.1_879318_879648_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP029649.1_879640_881137_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_003193665.1_ASM319366v1	NZ_CP029649	Staphylococcus aureus strain AR_0472 chromosome, complete genome	4	966475-966552	4	CRISPRCasFinder	no	cas3	cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	Unclear	TGGCGGGGCCCCAACATAAAGAA	23	1	11	966498-966529|966498-966529|966498-966529|966498-966529|966498-966529|966498-966529|966498-966529|966498-966529|966498-966529|966498-966529|966498-966529	NZ_CP029649.1_1423743-1423712|NZ_CP029649.1_1423798-1423767|NZ_CP029649.1_2786096-2786065|NZ_CP029649.1_960831-960862|NZ_CP029649.1_960889-960920|NZ_CP029649.1_960947-960978|NZ_CP029649.1_1132955-1132924|NZ_CP029649.1_1627928-1627897|NZ_CP029649.1_1950083-1950052|NZ_CP029649.1_2277283-2277314|NZ_CP029649.1_2625146-2625177	NA	1	1	Unclear	cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	NA,NA|36aa|down_5|NZ_CP029649.1_973992_974100_-,NA|35aa|down_7|NZ_CP029649.1_975532_975637_-	NA|301aa|up_9|NZ_CP029649.1_955262_956165_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP029649.1_956407_956995_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP029649.1_957558_958503_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP029649.1_958613_959609_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP029649.1_959605_960517_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP029649.1_961515_962451_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP029649.1_962517_963957_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP029649.1_963964_964450_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP029649.1_964457_965297_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP029649.1_965302_966235_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP029649.1_966840_969687_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP029649.1_969694_971680_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP029649.1_971948_972185_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP029649.1_972181_972832_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP029649.1_973005_973845_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP029649.1_973992_974100_-	NA	NA|370aa|down_6|NZ_CP029649.1_974253_975364_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP029649.1_975532_975637_-	NA	NA|844aa|down_8|NZ_CP029649.1_975678_978210_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP029649.1_978623_979196_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_003193665.1_ASM319366v1	NZ_CP029649	Staphylococcus aureus strain AR_0472 chromosome, complete genome	5	1383770-1383872	5	CRISPRCasFinder	no		cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	NA|221aa|up_1|NZ_CP029649.1_1382016_1382679_+,NA|33aa|down_0|NZ_CP029649.1_1384547_1384646_-,NA|93aa|down_5|NZ_CP029649.1_1391009_1391288_+,NA|128aa|down_7|NZ_CP029649.1_1392242_1392626_+,NA|70aa|down_9|NZ_CP029649.1_1393450_1393660_+	NA|66aa|up_9|NZ_CP029649.1_1373747_1373945_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|208aa|up_8|NZ_CP029649.1_1374088_1374712_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|379aa|up_7|NZ_CP029649.1_1374807_1375944_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|514aa|up_6|NZ_CP029649.1_1376037_1377579_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP029649.1_1377603_1379070_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP029649.1_1379107_1380376_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP029649.1_1380375_1380954_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP029649.1_1381466_1381874_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP029649.1_1382016_1382679_+	NA	NA|319aa|up_0|NZ_CP029649.1_1382796_1383753_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|33aa|down_0|NZ_CP029649.1_1384547_1384646_-	NA	NA|463aa|down_1|NZ_CP029649.1_1384730_1386119_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP029649.1_1386198_1386954_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP029649.1_1387445_1388015_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP029649.1_1388030_1389554_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|93aa|down_5|NZ_CP029649.1_1391009_1391288_+	NA	NA|209aa|down_6|NZ_CP029649.1_1391360_1391987_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_7|NZ_CP029649.1_1392242_1392626_+	NA	NA|194aa|down_8|NZ_CP029649.1_1392691_1393273_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_9|NZ_CP029649.1_1393450_1393660_+	NA
GCF_003193665.1_ASM319366v1	NZ_CP029649	Staphylococcus aureus strain AR_0472 chromosome, complete genome	6	1524210-1524300	6	CRISPRCasFinder	no		cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	Orphan	TTCTACAGACAATGCAAGTTGGGGTGTGGGCCC	33	1	20	1524243-1524267|1524243-1524267|1524243-1524267|1524243-1524267|1524243-1524267|1524243-1524267|1524243-1524267|1524243-1524267|1524243-1524267|1524243-1524267|1524243-1524267|1524243-1524267|1524243-1524267|1524243-1524267|1524243-1524267|1524243-1524267|1524243-1524267|1524243-1524267|1524243-1524267|1524243-1524267	NZ_CP029649.1_127554-127578|NZ_CP029649.1_351383-351407|NZ_CP029649.1_351441-351465|NZ_CP029649.1_440053-440029|NZ_CP029649.1_750232-750256|NZ_CP029649.1_960819-960843|NZ_CP029649.1_960877-960901|NZ_CP029649.1_960935-960959|NZ_CP029649.1_960993-961017|NZ_CP029649.1_1132967-1132943|NZ_CP029649.1_1423755-1423731|NZ_CP029649.1_1423810-1423786|NZ_CP029649.1_1627940-1627916|NZ_CP029649.1_1950095-1950071|NZ_CP029649.1_2288191-2288215|NZ_CP029649.1_2634483-2634507|NZ_CP029649.1_2786108-2786084|NZ_CP029649.1_435539-435563|NZ_CP029649.1_953678-953702|NZ_CP029649.1_2277271-2277295	NA	1	1	Orphan	cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	NA,NA|49aa|down_4|NZ_CP029649.1_1529883_1530030_-	NA|234aa|up_9|NZ_CP029649.1_1512335_1513037_-	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|148aa|up_8|NZ_CP029649.1_1513029_1513473_-	PRK04125, PRK04125, antiholin-like protein LrgA	NA|247aa|up_7|NZ_CP029649.1_1513585_1514326_-	PRK14084, PRK14084, DNA-binding response regulator	NA|580aa|up_6|NZ_CP029649.1_1514328_1516068_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|225aa|up_5|NZ_CP029649.1_1516326_1517001_-	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|574aa|up_4|NZ_CP029649.1_1517144_1518866_-	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|563aa|up_3|NZ_CP029649.1_1518898_1520587_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|342aa|up_2|NZ_CP029649.1_1520608_1521634_-	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase	NA|239aa|up_1|NZ_CP029649.1_1521626_1522343_-	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional	NA|390aa|up_0|NZ_CP029649.1_1522618_1523788_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|565aa|down_0|NZ_CP029649.1_1524838_1526533_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|342aa|down_1|NZ_CP029649.1_1526554_1527580_-	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase	NA|239aa|down_2|NZ_CP029649.1_1527572_1528289_-	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional	NA|348aa|down_3|NZ_CP029649.1_1528816_1529860_-	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|49aa|down_4|NZ_CP029649.1_1529883_1530030_-	NA	NA|352aa|down_5|NZ_CP029649.1_1530031_1531087_-	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family	NA|420aa|down_6|NZ_CP029649.1_1531104_1532364_-	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|93aa|down_7|NZ_CP029649.1_1532590_1532869_-	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|156aa|down_8|NZ_CP029649.1_1532891_1533359_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|699aa|down_9|NZ_CP029649.1_1533343_1535440_-	COG3711, BglG, Transcriptional antiterminator [Transcription]
GCF_003193665.1_ASM319366v1	NZ_CP029649	Staphylococcus aureus strain AR_0472 chromosome, complete genome	7	1725199-1725450	1,7,1	CRT,CRISPRCasFinder,PILER-CR	no	cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1	cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	Type III-C,Type III-B,Type III-D,Type III-A	AGTTCTCGTCCCCTCTTCTACGGGNGTAGTTATCGAAT,CTCGTCCCCTCTTCTACGGGGTAGTTATCGAAT,GAGTTCTCGTCCCCTCTTCTACGGGGTAGTTATCGAAT	38,33,38	0	0	NA	NA	NA:NA:NA	3,3,2	3	TypeIII-C,TypeIII-B,TypeIII-D,TypeIII-A	cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	NA|161aa|up_9|NZ_CP029649.1_1715010_1715493_-,NA|201aa|up_5|NZ_CP029649.1_1718554_1719157_-,NA|68aa|up_3|NZ_CP029649.1_1719710_1719914_-,NA	NA|161aa|up_9|NZ_CP029649.1_1715010_1715493_-	NA	NA|244aa|up_8|NZ_CP029649.1_1715648_1716380_-	PRK08317, PRK08317, hypothetical protein; Provisional	NA|185aa|up_7|NZ_CP029649.1_1716615_1717170_-	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator	NA|305aa|up_6|NZ_CP029649.1_1717348_1718263_+	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only]	NA|201aa|up_5|NZ_CP029649.1_1718554_1719157_-	NA	NA|99aa|up_4|NZ_CP029649.1_1719365_1719662_-	COG3070, TfoX, Regulator of competence-specific genes [Transcription]	NA|68aa|up_3|NZ_CP029649.1_1719710_1719914_-	NA	NA|311aa|up_2|NZ_CP029649.1_1720276_1721209_+	COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]	NA|558aa|up_1|NZ_CP029649.1_1721455_1723129_-	TIGR02169, chromosome_segregation_protein_related_ptotein, chromosome segregation protein SMC, primarily archaeal type	NA|312aa|up_0|NZ_CP029649.1_1723121_1724057_-	pfam14130, DUF4297, Domain of unknown function (DUF4297)	cas6|245aa|down_0|NZ_CP029649.1_1725584_1726319_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	csm6|423aa|down_1|NZ_CP029649.1_1726315_1727584_-	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	csm5gr7|341aa|down_2|NZ_CP029649.1_1727583_1728606_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|303aa|down_3|NZ_CP029649.1_1728608_1729517_-	TIGR01903, Hypothetical_protein	csm3gr7|215aa|down_4|NZ_CP029649.1_1729527_1730172_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|142aa|down_5|NZ_CP029649.1_1730173_1730599_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|758aa|down_6|NZ_CP029649.1_1730601_1732875_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas2|102aa|down_7|NZ_CP029649.1_1732888_1733194_-	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas1|302aa|down_8|NZ_CP029649.1_1733193_1734099_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	NA|104aa|down_9|NZ_CP029649.1_1735476_1735788_+	pfam11867, DUF3387, Domain of unknown function (DUF3387)
GCF_003193665.1_ASM319366v1	NZ_CP029649	Staphylococcus aureus strain AR_0472 chromosome, complete genome	8	1734173-1735063	8,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL	cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	Type III-C,Type III-B,Type III-D,Type III-A	ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC,ATTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC,TTCTCGTCCCCTGTTATTCGGGGTAGTTATCGATC	36,36,35	0	0	NA	NA	NA:NA:NA	12,12,6	12	TypeIII-C,TypeIII-B,TypeIII-D,TypeIII-A	cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	NA,NA|74aa|down_1|NZ_CP029649.1_1736079_1736301_-,NA|123aa|down_7|NZ_CP029649.1_1741185_1741554_-,NA|663aa|down_9|NZ_CP029649.1_1742850_1744839_-	NA|312aa|up_9|NZ_CP029649.1_1723121_1724057_-	pfam14130, DUF4297, Domain of unknown function (DUF4297)	cas6|245aa|up_8|NZ_CP029649.1_1725584_1726319_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	csm6|423aa|up_7|NZ_CP029649.1_1726315_1727584_-	TIGR02672, hypothetical_protein_SERP2456, CRISPR type III-A/MTUBE-associated protein Csm6	csm5gr7|341aa|up_6|NZ_CP029649.1_1727583_1728606_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|303aa|up_5|NZ_CP029649.1_1728608_1729517_-	TIGR01903, Hypothetical_protein	csm3gr7|215aa|up_4|NZ_CP029649.1_1729527_1730172_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|142aa|up_3|NZ_CP029649.1_1730173_1730599_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|758aa|up_2|NZ_CP029649.1_1730601_1732875_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas2|102aa|up_1|NZ_CP029649.1_1732888_1733194_-	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	cas1|302aa|up_0|NZ_CP029649.1_1733193_1734099_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	NA|104aa|down_0|NZ_CP029649.1_1735476_1735788_+	pfam11867, DUF3387, Domain of unknown function (DUF3387)	NA|74aa|down_1|NZ_CP029649.1_1736079_1736301_-	NA	NA|168aa|down_2|NZ_CP029649.1_1736315_1736819_-	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|104aa|down_3|NZ_CP029649.1_1736833_1737145_-	pfam06124, DUF960, Staphylococcal protein of unknown function (DUF960)	NA|113aa|down_4|NZ_CP029649.1_1737238_1737577_-	pfam06106, SAUGI, S	NA|560aa|down_5|NZ_CP029649.1_1737665_1739345_-	smart00857, Resolvase, Resolvase, N terminal domain	NA|539aa|down_6|NZ_CP029649.1_1739569_1741186_-	COG3378, COG3378, Phage associated DNA primase [General function prediction only]	NA|123aa|down_7|NZ_CP029649.1_1741185_1741554_-	NA	NA|370aa|down_8|NZ_CP029649.1_1741546_1742656_-	PRK14975, PRK14975, bifunctional 3'-5' exonuclease/DNA polymerase; Provisional	NA|663aa|down_9|NZ_CP029649.1_1742850_1744839_-	NA
GCF_003193665.1_ASM319366v1	NZ_CP029649	Staphylococcus aureus strain AR_0472 chromosome, complete genome	9	2030966-2031099	3	PILER-CR	no		cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	Orphan	TATTGAAGAAGATACAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	NA|67aa|up_1|NZ_CP029649.1_2028151_2028352_+,NA|34aa|up_0|NZ_CP029649.1_2028400_2028502_+,NA|78aa|down_6|NZ_CP029649.1_2043702_2043936_+,NA|103aa|down_7|NZ_CP029649.1_2044042_2044351_-,NA|89aa|down_8|NZ_CP029649.1_2044494_2044761_-	NA|426aa|up_9|NZ_CP029649.1_2017714_2018992_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_8|NZ_CP029649.1_2019901_2021725_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_7|NZ_CP029649.1_2021863_2022280_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP029649.1_2022510_2023203_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_5|NZ_CP029649.1_2023367_2024132_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_4|NZ_CP029649.1_2024285_2024966_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP029649.1_2024989_2026543_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP029649.1_2026659_2028018_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_1|NZ_CP029649.1_2028151_2028352_+	NA	NA|34aa|up_0|NZ_CP029649.1_2028400_2028502_+	NA	NA|930aa|down_0|NZ_CP029649.1_2032249_2035039_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_1|NZ_CP029649.1_2035218_2036085_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_2|NZ_CP029649.1_2036295_2037039_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_3|NZ_CP029649.1_2037368_2037725_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|1372aa|down_4|NZ_CP029649.1_2038029_2042145_+	pfam18483, Bact_lectin, Bacterial lectin	NA|398aa|down_5|NZ_CP029649.1_2042528_2043722_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|78aa|down_6|NZ_CP029649.1_2043702_2043936_+	NA	NA|103aa|down_7|NZ_CP029649.1_2044042_2044351_-	NA	NA|89aa|down_8|NZ_CP029649.1_2044494_2044761_-	NA	NA|603aa|down_9|NZ_CP029649.1_2045044_2046853_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)
GCF_003193665.1_ASM319366v1	NZ_CP029649	Staphylococcus aureus strain AR_0472 chromosome, complete genome	10	2127128-2127225	9	CRISPRCasFinder	no		cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	Orphan	GCCTTTCTAGCTCATAAAATTCGCAGAAA	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	NA|35aa|up_0|NZ_CP029649.1_2126706_2126811_+,NA|35aa|down_2|NZ_CP029649.1_2129397_2129502_-	NA|453aa|up_9|NZ_CP029649.1_2116650_2118009_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|up_8|NZ_CP029649.1_2118010_2119018_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|up_7|NZ_CP029649.1_2118995_2120111_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|up_6|NZ_CP029649.1_2120121_2120814_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|up_5|NZ_CP029649.1_2120824_2121292_+	pfam06177, QueT, QueT transporter	NA|326aa|up_4|NZ_CP029649.1_2121343_2122321_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|up_3|NZ_CP029649.1_2122322_2123270_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|310aa|up_2|NZ_CP029649.1_2123837_2124767_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|437aa|up_1|NZ_CP029649.1_2125301_2126612_-	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|35aa|up_0|NZ_CP029649.1_2126706_2126811_+	NA	NA|289aa|down_0|NZ_CP029649.1_2127364_2128231_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|229aa|down_1|NZ_CP029649.1_2128557_2129244_+	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|35aa|down_2|NZ_CP029649.1_2129397_2129502_-	NA	NA|480aa|down_3|NZ_CP029649.1_2129675_2131115_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|260aa|down_4|NZ_CP029649.1_2131235_2132015_+	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|240aa|down_5|NZ_CP029649.1_2131995_2132715_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|down_6|NZ_CP029649.1_2132711_2133443_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|417aa|down_7|NZ_CP029649.1_2133539_2134790_-	pfam02388, FemAB, FemAB family	NA|121aa|down_8|NZ_CP029649.1_2135044_2135407_+	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|200aa|down_9|NZ_CP029649.1_2135425_2136025_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
GCF_003193665.1_ASM319366v1	NZ_CP029649	Staphylococcus aureus strain AR_0472 chromosome, complete genome	11	2635817-2635948	4,10	PILER-CR,CRISPRCasFinder	no	DEDDh	cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	Unclear	CAGGTTGGCGGGGCCCCAACAAAGAGAA,CAGGTTGGCGGGGCCCCAACACAGA	28,25	2	20	2635901-2635931|2635901-2635931|2635901-2635931|2635901-2635931|2635901-2635931|2635901-2635931|2635901-2635931|2635901-2635931|2635901-2635931|2635901-2635931|2635890-2635920|2635890-2635920|2635890-2635920|2635890-2635920|2635890-2635920|2635890-2635920|2635890-2635920|2635890-2635920|2635890-2635920|2635890-2635920	NZ_CP029649.1_127621-127651|NZ_CP029649.1_439986-439956|NZ_CP029649.1_649871-649841|NZ_CP029649.1_1132900-1132870|NZ_CP029649.1_1423915-1423885|NZ_CP029649.1_2000572-2000602|NZ_CP029649.1_2288141-2288171|NZ_CP029649.1_918605-918635|NZ_CP029649.1_961060-961090|NZ_CP029649.1_2277224-2277254|NZ_CP029649.1_127621-127651|NZ_CP029649.1_439986-439956|NZ_CP029649.1_649871-649841|NZ_CP029649.1_1132900-1132870|NZ_CP029649.1_1423915-1423885|NZ_CP029649.1_2000572-2000602|NZ_CP029649.1_2288141-2288171|NZ_CP029649.1_918605-918635|NZ_CP029649.1_961060-961090|NZ_CP029649.1_2277224-2277254	NA:NA	2,1	2	Orphan	cas3,DinG,DEDDh,cas6,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas2,cas1,WYL,csa3	NA|31aa|up_6|NZ_CP029649.1_2630528_2630621_+,NA|37aa|up_2|NZ_CP029649.1_2633626_2633737_+,NA|138aa|up_1|NZ_CP029649.1_2633765_2634179_+,NA|129aa|down_1|NZ_CP029649.1_2637098_2637485_+,NA|92aa|down_6|NZ_CP029649.1_2641466_2641742_-	NA|177aa|up_9|NZ_CP029649.1_2627844_2628375_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|up_8|NZ_CP029649.1_2628621_2629692_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_7|NZ_CP029649.1_2629758_2630313_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|up_6|NZ_CP029649.1_2630528_2630621_+	NA	NA|167aa|up_5|NZ_CP029649.1_2630702_2631203_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_4|NZ_CP029649.1_2631494_2632808_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_3|NZ_CP029649.1_2632809_2633541_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|up_2|NZ_CP029649.1_2633626_2633737_+	NA	NA|138aa|up_1|NZ_CP029649.1_2633765_2634179_+	NA	NA|329aa|up_0|NZ_CP029649.1_2634609_2635596_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|NZ_CP029649.1_2636123_2636882_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|NZ_CP029649.1_2637098_2637485_+	NA	NA|234aa|down_2|NZ_CP029649.1_2637499_2638201_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|NZ_CP029649.1_2638197_2639241_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|NZ_CP029649.1_2639230_2639860_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|NZ_CP029649.1_2639971_2641189_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|NZ_CP029649.1_2641466_2641742_-	NA	NA|155aa|down_7|NZ_CP029649.1_2641748_2642213_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|NZ_CP029649.1_2642359_2642560_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|419aa|down_9|NZ_CP029649.1_2642562_2643819_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
