assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003186685.1_ASM318668v1	NZ_CP020651	Bordetella bronchiseptica strain D755 chromosome, complete genome	1	487499-487600	1	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	CTGCGGCCAGGGAGCCTGTCCCCGC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA|54aa|up_3|NZ_CP020651.1_479151_479313_+,NA	NA|112aa|up_9|NZ_CP020651.1_468808_469144_-	pfam07411, DUF1508, Domain of unknown function (DUF1508)	NA|382aa|up_8|NZ_CP020651.1_469284_470430_-	cd06812, PLPDE_III_DSD_D-TA_like_1, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1	NA|220aa|up_7|NZ_CP020651.1_470456_471116_-	cd02588, HAD_L2-DEX, L-2-haloacid dehalogenase	NA|303aa|up_6|NZ_CP020651.1_471207_472116_+	cd08479, PBP2_CrgA_like_9, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|61aa|up_5|NZ_CP020651.1_472112_472295_+	pfam12167, Arm-DNA-bind_2, Arm DNA-binding domain	NA|2153aa|up_4|NZ_CP020651.1_472608_479067_+	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|54aa|up_3|NZ_CP020651.1_479151_479313_+	NA	NA|44aa|up_2|NZ_CP020651.1_479344_479476_+	COG5510, COG5510, Predicted small secreted protein [Function unknown]	NA|2300aa|up_1|NZ_CP020651.1_479922_486822_+	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|200aa|up_0|NZ_CP020651.1_486855_487455_+	cd20298, cupin_UAH, ureidoglycolate amidohydrolase (UAH) and related proteins, cupin domain	NA|326aa|down_0|NZ_CP020651.1_487881_488859_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|525aa|down_1|NZ_CP020651.1_488872_490447_+	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|247aa|down_2|NZ_CP020651.1_490454_491195_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|255aa|down_3|NZ_CP020651.1_491218_491983_+	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|112aa|down_4|NZ_CP020651.1_492027_492363_+	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|327aa|down_5|NZ_CP020651.1_492416_493397_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|185aa|down_6|NZ_CP020651.1_493496_494051_+	cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases	NA|418aa|down_7|NZ_CP020651.1_494142_495396_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|321aa|down_8|NZ_CP020651.1_495373_496336_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|159aa|down_9|NZ_CP020651.1_496488_496965_+	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes
GCF_003186685.1_ASM318668v1	NZ_CP020651	Bordetella bronchiseptica strain D755 chromosome, complete genome	2	1003987-1004071	2	CRISPRCasFinder	no	csa3	csa3,DEDDh,DinG,cas3	Type I-A	GGTGCCTGTCCCCGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|169aa|up_9|NZ_CP020651.1_994108_994615_-	cd08896, SRPBCC_CalC_Aha1-like_3, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	csa3|113aa|up_8|NZ_CP020651.1_994611_994950_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|840aa|up_7|NZ_CP020651.1_995378_997898_+	PRK10833, PRK10833, putative assembly protein; Provisional	NA|129aa|up_6|NZ_CP020651.1_997894_998281_+	pfam03476, MOSC_N, MOSC N-terminal beta barrel domain	NA|406aa|up_5|NZ_CP020651.1_998288_999506_-	pfam03594, BenE, Benzoate membrane transport protein	NA|84aa|up_4|NZ_CP020651.1_999502_999754_-	cd10549, MtMvhB_like, Uncharacterized polyferredoxin-like protein	NA|170aa|up_3|NZ_CP020651.1_999808_1000318_-	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|207aa|up_2|NZ_CP020651.1_1000338_1000959_-	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|402aa|up_1|NZ_CP020651.1_1001028_1002234_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|533aa|up_0|NZ_CP020651.1_1002280_1003879_-	cd07756, CYTH-like_Pase_CHAD, Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain	NA|274aa|down_0|NZ_CP020651.1_1004117_1004939_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|297aa|down_1|NZ_CP020651.1_1004935_1005826_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|257aa|down_2|NZ_CP020651.1_1005822_1006593_-	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system	NA|336aa|down_3|NZ_CP020651.1_1006595_1007603_-	cd13573, PBP2_PnhD_3, Substrate binding domain of uncharacterized ABC-type phosphonate-like transporter; contains the type 2 periplasmic binding fold	NA|276aa|down_4|NZ_CP020651.1_1007751_1008579_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|266aa|down_5|NZ_CP020651.1_1008584_1009382_-	TIGR01484, Putative_mannosyl-3-phosphoglycerate_phosphatase, HAD-superfamily hydrolase, subfamily IIB	NA|392aa|down_6|NZ_CP020651.1_1009527_1010703_+	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|176aa|down_7|NZ_CP020651.1_1010716_1011244_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|155aa|down_8|NZ_CP020651.1_1011251_1011716_+	PRK00202, nusB, transcription antitermination factor NusB	NA|339aa|down_9|NZ_CP020651.1_1011755_1012772_+	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional
GCF_003186685.1_ASM318668v1	NZ_CP020651	Bordetella bronchiseptica strain D755 chromosome, complete genome	3	1529896-1529982	3	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	AGTGTGCCTGTCCCCGCAGGGACAG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA|106aa|down_5|NZ_CP020651.1_1535906_1536224_-	NA|109aa|up_9|NZ_CP020651.1_1518224_1518551_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|203aa|up_8|NZ_CP020651.1_1518600_1519209_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|417aa|up_7|NZ_CP020651.1_1519283_1520534_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|347aa|up_6|NZ_CP020651.1_1520639_1521680_+	cd13649, PBP2_Cae31940, Substrate binding domain of an uncharacterized protein similar to ABC-type transporter for thiamin biosynthetic pathway intermediates; a member of the type 2 periplasmic binding fold superfamily	NA|270aa|up_5|NZ_CP020651.1_1521672_1522482_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|265aa|up_4|NZ_CP020651.1_1522485_1523280_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|328aa|up_3|NZ_CP020651.1_1523321_1524305_-	PRK05269, PRK05269, transaldolase B; Provisional	NA|366aa|up_2|NZ_CP020651.1_1524567_1525665_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1081aa|up_1|NZ_CP020651.1_1525675_1528918_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|255aa|up_0|NZ_CP020651.1_1529068_1529833_+	PRK07024, PRK07024, SDR family oxidoreductase	NA|215aa|down_0|NZ_CP020651.1_1530013_1530658_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|300aa|down_1|NZ_CP020651.1_1530668_1531568_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|362aa|down_2|NZ_CP020651.1_1531615_1532701_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|570aa|down_3|NZ_CP020651.1_1532697_1534407_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|441aa|down_4|NZ_CP020651.1_1534483_1535806_-	cd13518, PBP2_Fe3_thiamine_like, Substrate binding domain of iron and thiamine transporters-like, a member of the type 2 periplasmic binding fold superfamily	NA|106aa|down_5|NZ_CP020651.1_1535906_1536224_-	NA	NA|438aa|down_6|NZ_CP020651.1_1536357_1537671_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|546aa|down_7|NZ_CP020651.1_1537701_1539339_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|159aa|down_8|NZ_CP020651.1_1539962_1540439_+	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|201aa|down_9|NZ_CP020651.1_1540793_1541396_-	smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly
GCF_003186685.1_ASM318668v1	NZ_CP020651	Bordetella bronchiseptica strain D755 chromosome, complete genome	4	2353641-2353802	4	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	GGTGGAAGTCGTGCCGCGGCCGAAGGTCGAAACGGCCCAGCCGCTTCCGCCCCG	54	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|303aa|up_9|NZ_CP020651.1_2330053_2330962_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|350aa|up_8|NZ_CP020651.1_2331304_2332354_+	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|207aa|up_7|NZ_CP020651.1_2332463_2333084_+	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|428aa|up_6|NZ_CP020651.1_2333080_2334364_+	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|240aa|up_5|NZ_CP020651.1_2334386_2335106_+	pfam11010, DUF2848, Protein of unknown function (DUF2848)	NA|450aa|up_4|NZ_CP020651.1_2335166_2336516_+	PRK07056, PRK07056, amidase; Provisional	NA|278aa|up_3|NZ_CP020651.1_2336534_2337368_+	PRK05463, PRK05463, putative hydro-lyase	NA|292aa|up_2|NZ_CP020651.1_2337501_2338377_+	pfam00563, EAL, EAL domain	NA|1239aa|up_1|NZ_CP020651.1_2338423_2342140_-	PRK09959, PRK09959, acid-sensing system histidine kinase EvgS	NA|210aa|up_0|NZ_CP020651.1_2342148_2342778_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|202aa|down_0|NZ_CP020651.1_2354789_2355395_+	pfam16970, FimA, Type-1 fimbrial protein, A	NA|245aa|down_1|NZ_CP020651.1_2355644_2356379_+	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|874aa|down_2|NZ_CP020651.1_2356441_2359063_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|366aa|down_3|NZ_CP020651.1_2359076_2360174_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|584aa|down_4|NZ_CP020651.1_2360166_2361918_+	pfam03865, ShlB, Haemolysin secretion/activation protein ShlB/FhaC/HecB	NA|434aa|down_5|NZ_CP020651.1_2361943_2363245_-	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|167aa|down_6|NZ_CP020651.1_2363237_2363738_-	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|362aa|down_7|NZ_CP020651.1_2363744_2364830_-	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|433aa|down_8|NZ_CP020651.1_2364982_2366281_-	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|164aa|down_9|NZ_CP020651.1_2366273_2366765_-	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component
GCF_003186685.1_ASM318668v1	NZ_CP020651	Bordetella bronchiseptica strain D755 chromosome, complete genome	5	3124430-3124557	5	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	GCCCCCACGCTGCGCCCGCTACGCGGGCTTGCTGCCCCCCGAG	43	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|621aa|up_9|NZ_CP020651.1_3114340_3116203_-	PRK05183, hscA, chaperone protein HscA; Provisional	NA|171aa|up_8|NZ_CP020651.1_3116332_3116845_-	PRK03578, hscB, Fe-S protein assembly co-chaperone HscB	NA|108aa|up_7|NZ_CP020651.1_3116847_3117171_-	TIGR02011, Protein_yfhF	NA|137aa|up_6|NZ_CP020651.1_3117172_3117583_-	PRK11325, PRK11325, scaffold protein; Provisional	NA|404aa|up_5|NZ_CP020651.1_3117616_3118828_-	PRK14012, PRK14012, IscS subfamily cysteine desulfurase	NA|171aa|up_4|NZ_CP020651.1_3118845_3119358_-	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR	NA|164aa|up_3|NZ_CP020651.1_3119573_3120065_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|676aa|up_2|NZ_CP020651.1_3120326_3122354_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|401aa|up_1|NZ_CP020651.1_3122431_3123634_+	PRK09257, PRK09257, aromatic amino acid transaminase	NA|243aa|up_0|NZ_CP020651.1_3123684_3124413_+	PRK00215, PRK00215, transcriptional repressor LexA	NA|321aa|down_0|NZ_CP020651.1_3126456_3127419_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|214aa|down_1|NZ_CP020651.1_3127453_3128095_-	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit	NA|239aa|down_2|NZ_CP020651.1_3128087_3128804_-	TIGR02429, 3-oxoadipate_CoA-transferase_subunit_A, 3-oxoacid CoA-transferase, A subunit	NA|332aa|down_3|NZ_CP020651.1_3128800_3129796_-	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|388aa|down_4|NZ_CP020651.1_3129817_3130981_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|264aa|down_5|NZ_CP020651.1_3130977_3131769_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|386aa|down_6|NZ_CP020651.1_3131775_3132933_-	PRK06158, PRK06158, thiolase; Provisional	NA|144aa|down_7|NZ_CP020651.1_3132929_3133361_-	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|268aa|down_8|NZ_CP020651.1_3133357_3134161_-	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|155aa|down_9|NZ_CP020651.1_3134174_3134639_-	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit
GCF_003186685.1_ASM318668v1	NZ_CP020651	Bordetella bronchiseptica strain D755 chromosome, complete genome	6	3248425-3248540	6	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	TTTTTGCCTTGGGACGGCCCGGCGGCAAAAAAA	33	1	5	3248458-3248507|3248458-3248507|3248458-3248507|3248458-3248507|3248458-3248507	NZ_CP020651.1_1486880-1486929|NZ_CP020651.1_3091251-3091300|NZ_CP020651.1_1442311-1442262|NZ_CP020651.1_1442394-1442345|NZ_CP020651.1_3269412-3269363	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA|267aa|up_9|NZ_CP020651.1_3238743_3239544_+,NA|208aa|up_2|NZ_CP020651.1_3246031_3246655_-,NA|439aa|up_1|NZ_CP020651.1_3246651_3247968_-,NA|88aa|up_0|NZ_CP020651.1_3247964_3248228_-,NA	NA|267aa|up_9|NZ_CP020651.1_3238743_3239544_+	NA	NA|299aa|up_8|NZ_CP020651.1_3239765_3240662_-	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|282aa|up_7|NZ_CP020651.1_3240672_3241518_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|539aa|up_6|NZ_CP020651.1_3241514_3243131_-	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|471aa|up_5|NZ_CP020651.1_3243127_3244540_-	pfam00263, Secretin, Bacterial type II and III secretion system protein	NA|282aa|up_4|NZ_CP020651.1_3244536_3245382_-	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|219aa|up_3|NZ_CP020651.1_3245378_3246035_-	PRK14852, PRK14852, hypothetical protein; Provisional	NA|208aa|up_2|NZ_CP020651.1_3246031_3246655_-	NA	NA|439aa|up_1|NZ_CP020651.1_3246651_3247968_-	NA	NA|88aa|up_0|NZ_CP020651.1_3247964_3248228_-	NA	NA|44aa|down_0|NZ_CP020651.1_3248585_3248717_-	COG5510, COG5510, Predicted small secreted protein [Function unknown]	NA|232aa|down_1|NZ_CP020651.1_3248743_3249439_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|179aa|down_2|NZ_CP020651.1_3249622_3250159_-	PRK01250, PRK01250, inorganic diphosphatase	NA|532aa|down_3|NZ_CP020651.1_3250187_3251783_-	TIGR00540, TPR_hemY_coli, heme biosynthesis-associated TPR protein	NA|395aa|down_4|NZ_CP020651.1_3251786_3252971_-	PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed	NA|275aa|down_5|NZ_CP020651.1_3253008_3253833_-	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme	NA|315aa|down_6|NZ_CP020651.1_3253829_3254774_-	PRK00072, hemC, porphobilinogen deaminase; Reviewed	NA|240aa|down_7|NZ_CP020651.1_3254892_3255612_-	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family	NA|232aa|down_8|NZ_CP020651.1_3255770_3256466_-	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family	NA|294aa|down_9|NZ_CP020651.1_3256741_3257623_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated
GCF_003186685.1_ASM318668v1	NZ_CP020651	Bordetella bronchiseptica strain D755 chromosome, complete genome	7	4108734-4108859	7	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	GGGGGGCAGCAAGCTGGCGCAGCGAGCGCAGCGTGGGGGCATTTTC	46	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|245aa|up_9|NZ_CP020651.1_4095408_4096143_+	PRK01305, PRK01305, arginyl-tRNA-protein transferase; Provisional	NA|350aa|up_8|NZ_CP020651.1_4096183_4097233_+	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|193aa|up_7|NZ_CP020651.1_4097380_4097959_-	TIGR01841, hypothetical_protein, phasin family protein	NA|326aa|up_6|NZ_CP020651.1_4098345_4099323_+	cd13576, PBP2_BugD_Asp, Aspartic acid transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|1465aa|up_5|NZ_CP020651.1_4099416_4103811_-	pfam05785, CNF1, Rho-activating domain of cytotoxic necrotizing factor	NA|283aa|up_4|NZ_CP020651.1_4104011_4104860_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|271aa|up_3|NZ_CP020651.1_4105018_4105831_-	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]	NA|267aa|up_2|NZ_CP020651.1_4105885_4106686_-	pfam07264, EI24, Etoposide-induced protein 2	NA|128aa|up_1|NZ_CP020651.1_4106747_4107131_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|478aa|up_0|NZ_CP020651.1_4107142_4108576_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|110aa|down_0|NZ_CP020651.1_4108863_4109193_-	COG4392, COG4392, Predicted membrane protein [Function unknown]	NA|223aa|down_1|NZ_CP020651.1_4109195_4109864_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|307aa|down_2|NZ_CP020651.1_4110127_4111048_+	PRK06606, PRK06606, branched-chain amino acid transaminase	NA|71aa|down_3|NZ_CP020651.1_4111094_4111307_+	COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_4|NZ_CP020651.1_4111329_4111752_+	pfam13474, SnoaL_3, SnoaL-like domain	NA|367aa|down_5|NZ_CP020651.1_4111768_4112869_+	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]	NA|506aa|down_6|NZ_CP020651.1_4112965_4114483_-	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]	NA|280aa|down_7|NZ_CP020651.1_4114558_4115398_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|294aa|down_8|NZ_CP020651.1_4115419_4116301_-	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)	NA|365aa|down_9|NZ_CP020651.1_4116382_4117477_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane
GCF_003186685.1_ASM318668v1	NZ_CP020651	Bordetella bronchiseptica strain D755 chromosome, complete genome	8	4397769-4397862	8	CRISPRCasFinder	no	DEDDh	csa3,DEDDh,DinG,cas3	Unclear	GTGCCTGTCCCCGCCGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|398aa|up_9|NZ_CP020651.1_4386189_4387383_-	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase	NA|343aa|up_8|NZ_CP020651.1_4387448_4388477_-	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain	NA|391aa|up_7|NZ_CP020651.1_4388503_4389676_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|326aa|up_6|NZ_CP020651.1_4389801_4390779_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|324aa|up_5|NZ_CP020651.1_4390789_4391761_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|262aa|up_4|NZ_CP020651.1_4391827_4392613_-	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|411aa|up_3|NZ_CP020651.1_4392605_4393838_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|252aa|up_2|NZ_CP020651.1_4394033_4394789_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|173aa|up_1|NZ_CP020651.1_4394899_4395418_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|708aa|up_0|NZ_CP020651.1_4395414_4397538_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|157aa|down_0|NZ_CP020651.1_4397948_4398419_-	pfam00582, Usp, Universal stress protein family	NA|115aa|down_1|NZ_CP020651.1_4398507_4398852_-	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|467aa|down_2|NZ_CP020651.1_4398951_4400352_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|305aa|down_3|NZ_CP020651.1_4400540_4401455_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|220aa|down_4|NZ_CP020651.1_4401451_4402111_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|308aa|down_5|NZ_CP020651.1_4402200_4403124_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|152aa|down_6|NZ_CP020651.1_4403129_4403585_-	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|368aa|down_7|NZ_CP020651.1_4403581_4404685_-	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria	NA|91aa|down_8|NZ_CP020651.1_4404640_4404913_+	pfam04138, GtrA, GtrA-like protein	NA|540aa|down_9|NZ_CP020651.1_4404872_4406492_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
GCF_003186685.1_ASM318668v1	NZ_CP020651	Bordetella bronchiseptica strain D755 chromosome, complete genome	9	4533243-4533323	9	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	GTGCCTGTCCCCGCCGGGACAGGC	24	1	1	4533267-4533299	NZ_CP020651.1_3963509-3963477	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA|42aa|up_2|NZ_CP020651.1_4531594_4531720_-,NA	NA|1169aa|up_9|NZ_CP020651.1_4519410_4522917_+	PRK13030, PRK13030, indolepyruvate ferredoxin oxidoreductase family protein	NA|976aa|up_8|NZ_CP020651.1_4523222_4526150_+	PRK07207, PRK07207, ribonucleoside-diphosphate reductase subunit alpha	NA|401aa|up_7|NZ_CP020651.1_4526171_4527374_+	PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated	NA|191aa|up_6|NZ_CP020651.1_4527691_4528264_+	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|192aa|up_5|NZ_CP020651.1_4528402_4528978_+	pfam02325, YGGT, YGGT family	NA|488aa|up_4|NZ_CP020651.1_4528985_4530449_-	cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) and similar proteins	NA|376aa|up_3|NZ_CP020651.1_4530459_4531587_-	TIGR04091, hypothetical_protein, D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA|42aa|up_2|NZ_CP020651.1_4531594_4531720_-	NA	NA|376aa|up_1|NZ_CP020651.1_4531716_4532844_-	pfam04914, DltD, DltD protein	NA|80aa|up_0|NZ_CP020651.1_4532869_4533109_-	COG0236, AcpP, Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|168aa|down_0|NZ_CP020651.1_4533427_4533931_-	COG3133, SlyB, Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]	NA|314aa|down_1|NZ_CP020651.1_4534104_4535046_-	cd01942, ribokinase_group_A, Ribokinase-like subgroup A	NA|376aa|down_2|NZ_CP020651.1_4535057_4536185_-	pfam11906, DUF3426, Protein of unknown function (DUF3426)	NA|308aa|down_3|NZ_CP020651.1_4536210_4537134_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|449aa|down_4|NZ_CP020651.1_4537152_4538499_-	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|150aa|down_5|NZ_CP020651.1_4538508_4538958_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|145aa|down_6|NZ_CP020651.1_4539047_4539482_-	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|183aa|down_7|NZ_CP020651.1_4539560_4540109_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|457aa|down_8|NZ_CP020651.1_4540191_4541562_+	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|198aa|down_9|NZ_CP020651.1_4541572_4542166_+	COG3150, COG3150, Predicted esterase [General function prediction only]
GCF_003186685.1_ASM318668v1	NZ_CP020651	Bordetella bronchiseptica strain D755 chromosome, complete genome	10	4676331-4676414	10	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	GGTGCCTGTCCCCGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|429aa|up_9|NZ_CP020651.1_4668337_4669624_-	pfam00034, Cytochrom_C, Cytochrome c	NA|251aa|up_8|NZ_CP020651.1_4669634_4670387_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|291aa|up_7|NZ_CP020651.1_4670558_4671431_+	PRK05416, PRK05416, RNase adapter RapZ	NA|317aa|up_6|NZ_CP020651.1_4671427_4672378_+	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|191aa|up_5|NZ_CP020651.1_4672374_4672947_-	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|313aa|up_4|NZ_CP020651.1_4672943_4673882_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|178aa|up_3|NZ_CP020651.1_4673948_4674482_+	PRK14685, PRK14685, hypothetical protein; Provisional	NA|201aa|up_2|NZ_CP020651.1_4674481_4675084_+	PRK13936, PRK13936, phosphoheptose isomerase; Provisional	NA|248aa|up_1|NZ_CP020651.1_4675080_4675824_+	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|164aa|up_0|NZ_CP020651.1_4675820_4676312_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|263aa|down_0|NZ_CP020651.1_4676468_4677257_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|301aa|down_1|NZ_CP020651.1_4677518_4678421_+	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|249aa|down_2|NZ_CP020651.1_4678420_4679167_+	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p	NA|192aa|down_3|NZ_CP020651.1_4679216_4679792_+	PRK09480, slmA, division inhibitor protein; Provisional	NA|498aa|down_4|NZ_CP020651.1_4680004_4681498_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|352aa|down_5|NZ_CP020651.1_4681508_4682564_+	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase	NA|379aa|down_6|NZ_CP020651.1_4682589_4683726_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|651aa|down_7|NZ_CP020651.1_4683722_4685675_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|188aa|down_8|NZ_CP020651.1_4685688_4686252_-	TIGR03426, shape_MreD, rod shape-determining protein MreD	NA|295aa|down_9|NZ_CP020651.1_4686238_4687123_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional
GCF_003186685.1_ASM318668v1	NZ_CP020651	Bordetella bronchiseptica strain D755 chromosome, complete genome	11	4759352-4759432	11	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	GTGCCTGTCCCCGCGGGGACAGGCACCT	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA|79aa|up_8|NZ_CP020651.1_4750030_4750267_+,NA	NA|287aa|up_9|NZ_CP020651.1_4749042_4749903_+	cd01171, YXKO-related, B	NA|79aa|up_8|NZ_CP020651.1_4750030_4750267_+	NA	NA|543aa|up_7|NZ_CP020651.1_4750563_4752192_+	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|348aa|up_6|NZ_CP020651.1_4752240_4753284_+	cd06910, M14_ASTE_ASPA-like, Peptidase M14 Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA)-like; uncharacterized subgroup	NA|326aa|up_5|NZ_CP020651.1_4753342_4754320_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|307aa|up_4|NZ_CP020651.1_4754327_4755248_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|328aa|up_3|NZ_CP020651.1_4755244_4756228_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|337aa|up_2|NZ_CP020651.1_4756224_4757235_+	COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]	NA|302aa|up_1|NZ_CP020651.1_4757237_4758143_+	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|378aa|up_0|NZ_CP020651.1_4758186_4759320_+	cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme	NA|690aa|down_0|NZ_CP020651.1_4759451_4761521_-	TIGR01074, ATP-dependent_DNA_helicase_Rep, ATP-dependent DNA helicase Rep	NA|701aa|down_1|NZ_CP020651.1_4761563_4763666_-	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|359aa|down_2|NZ_CP020651.1_4763972_4765049_-	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|294aa|down_3|NZ_CP020651.1_4765124_4766006_-	PRK15115, PRK15115, response regulator GlrR; Provisional	NA|141aa|down_4|NZ_CP020651.1_4766188_4766611_-	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated	NA|467aa|down_5|NZ_CP020651.1_4766620_4768021_-	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|302aa|down_6|NZ_CP020651.1_4768063_4768969_-	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	NA|514aa|down_7|NZ_CP020651.1_4769067_4770609_-	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|180aa|down_8|NZ_CP020651.1_4770643_4771183_-	PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated	NA|157aa|down_9|NZ_CP020651.1_4771195_4771666_-	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated
