assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003186185.1_ASM318618v1	NZ_CP020649	Bordetella bronchiseptica strain E010 chromosome, complete genome	1	994318-994402	1	CRISPRCasFinder	no	csa3	csa3,RT,DEDDh,DinG,cas3	Type I-A	GGTGCCTGTCCCCGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,DEDDh,DinG,cas3	NA,NA	NA|169aa|up_9|NZ_CP020649.1_984418_984925_-	cd08896, SRPBCC_CalC_Aha1-like_3, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	csa3|113aa|up_8|NZ_CP020649.1_984921_985260_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|840aa|up_7|NZ_CP020649.1_985688_988208_+	PRK10833, PRK10833, putative assembly protein; Provisional	NA|129aa|up_6|NZ_CP020649.1_988204_988591_+	pfam03476, MOSC_N, MOSC N-terminal beta barrel domain	NA|406aa|up_5|NZ_CP020649.1_988598_989816_-	pfam03594, BenE, Benzoate membrane transport protein	NA|84aa|up_4|NZ_CP020649.1_989812_990064_-	cd10549, MtMvhB_like, Uncharacterized polyferredoxin-like protein	NA|170aa|up_3|NZ_CP020649.1_990118_990628_-	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|207aa|up_2|NZ_CP020649.1_990648_991269_-	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|409aa|up_1|NZ_CP020649.1_991338_992565_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|533aa|up_0|NZ_CP020649.1_992611_994210_-	cd07756, CYTH-like_Pase_CHAD, Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain	NA|274aa|down_0|NZ_CP020649.1_994448_995270_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|297aa|down_1|NZ_CP020649.1_995266_996157_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|257aa|down_2|NZ_CP020649.1_996153_996924_-	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system	NA|336aa|down_3|NZ_CP020649.1_996926_997934_-	cd13573, PBP2_PnhD_3, Substrate binding domain of uncharacterized ABC-type phosphonate-like transporter; contains the type 2 periplasmic binding fold	NA|276aa|down_4|NZ_CP020649.1_998082_998910_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|266aa|down_5|NZ_CP020649.1_998915_999713_-	TIGR01484, Putative_mannosyl-3-phosphoglycerate_phosphatase, HAD-superfamily hydrolase, subfamily IIB	NA|392aa|down_6|NZ_CP020649.1_999858_1001034_+	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|176aa|down_7|NZ_CP020649.1_1001047_1001575_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|155aa|down_8|NZ_CP020649.1_1001582_1002047_+	PRK00202, nusB, transcription antitermination factor NusB	NA|339aa|down_9|NZ_CP020649.1_1002086_1003103_+	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional
GCF_003186185.1_ASM318618v1	NZ_CP020649	Bordetella bronchiseptica strain E010 chromosome, complete genome	2	1217802-1217894	2	CRISPRCasFinder	no		csa3,RT,DEDDh,DinG,cas3	Orphan	CAGGCACCCGCGGCATGCAGCCTGCTG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,DEDDh,DinG,cas3	NA,NA	NA|247aa|up_9|NZ_CP020649.1_1206684_1207425_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|259aa|up_8|NZ_CP020649.1_1207553_1208330_-	PRK06224, PRK06224, citryl-CoA lyase	NA|174aa|up_7|NZ_CP020649.1_1208331_1208853_-	cd03446, MaoC_like, MoaC_like    Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain	NA|389aa|up_6|NZ_CP020649.1_1208849_1210016_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|251aa|up_5|NZ_CP020649.1_1210045_1210798_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|703aa|up_4|NZ_CP020649.1_1211056_1213165_+	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion]	NA|325aa|up_3|NZ_CP020649.1_1213219_1214194_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|350aa|up_2|NZ_CP020649.1_1214205_1215255_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|208aa|up_1|NZ_CP020649.1_1215255_1215879_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|584aa|up_0|NZ_CP020649.1_1215893_1217645_+	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5	NA|290aa|down_0|NZ_CP020649.1_1217939_1218809_-	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional	NA|232aa|down_1|NZ_CP020649.1_1218879_1219575_+	COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]	NA|168aa|down_2|NZ_CP020649.1_1219564_1220068_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|411aa|down_3|NZ_CP020649.1_1220064_1221297_+	cd17410, MFS_CynX_like, Cyanate transport protein CynX and similar proteins of the Major Facilitator Superfamily of transporters	NA|301aa|down_4|NZ_CP020649.1_1221244_1222147_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|324aa|down_5|NZ_CP020649.1_1222299_1223271_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|458aa|down_6|NZ_CP020649.1_1223309_1224683_+	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|234aa|down_7|NZ_CP020649.1_1224720_1225422_-	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|330aa|down_8|NZ_CP020649.1_1225731_1226721_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|154aa|down_9|NZ_CP020649.1_1226819_1227281_+	COG1522, Lrp, Transcriptional regulators [Transcription]
GCF_003186185.1_ASM318618v1	NZ_CP020649	Bordetella bronchiseptica strain E010 chromosome, complete genome	3	1404583-1404670	3	CRISPRCasFinder	no		csa3,RT,DEDDh,DinG,cas3	Orphan	GGCACGCCGGGGAAGTGGCAGGCGTGGAGG	30	1	1	1404613-1404640	NZ_CP020649.1_1419373-1419400	NA	1	1	Orphan	csa3,RT,DEDDh,DinG,cas3	NA|144aa|up_7|NZ_CP020649.1_1397993_1398425_-,NA|292aa|up_4|NZ_CP020649.1_1400758_1401634_-,NA	NA|1145aa|up_9|NZ_CP020649.1_1393648_1397083_+	pfam05359, DUF748, Domain of Unknown Function (DUF748)	NA|302aa|up_8|NZ_CP020649.1_1397079_1397985_+	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|144aa|up_7|NZ_CP020649.1_1397993_1398425_-	NA	NA|168aa|up_6|NZ_CP020649.1_1398661_1399165_+	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol	NA|489aa|up_5|NZ_CP020649.1_1399176_1400643_+	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|292aa|up_4|NZ_CP020649.1_1400758_1401634_-	NA	NA|336aa|up_3|NZ_CP020649.1_1401630_1402638_-	TIGR00433, biotin_synthase, biotin synthase	NA|102aa|up_2|NZ_CP020649.1_1403106_1403412_+	pfam13663, DUF4148, Domain of unknown function (DUF4148)	NA|102aa|up_1|NZ_CP020649.1_1403475_1403781_+	pfam13663, DUF4148, Domain of unknown function (DUF4148)	NA|197aa|up_0|NZ_CP020649.1_1403904_1404495_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|298aa|down_0|NZ_CP020649.1_1405206_1406100_-	cd00377, ICL_PEPM, Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage	NA|895aa|down_1|NZ_CP020649.1_1406299_1408984_+	PRK09277, PRK09277, aconitate hydratase AcnA	NA|458aa|down_2|NZ_CP020649.1_1409008_1410382_+	cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids	NA|240aa|down_3|NZ_CP020649.1_1410415_1411135_+	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia	NA|334aa|down_4|NZ_CP020649.1_1411145_1412147_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|340aa|down_5|NZ_CP020649.1_1412284_1413304_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|462aa|down_6|NZ_CP020649.1_1413322_1414708_+	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c	NA|459aa|down_7|NZ_CP020649.1_1414704_1416081_+	pfam03972, MmgE_PrpD, MmgE/PrpD family	NA|332aa|down_8|NZ_CP020649.1_1416149_1417145_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|233aa|down_9|NZ_CP020649.1_1418559_1419258_-	COG1802, GntR, Transcriptional regulators [Transcription]
GCF_003186185.1_ASM318618v1	NZ_CP020649	Bordetella bronchiseptica strain E010 chromosome, complete genome	4	2393123-2393284	4	CRISPRCasFinder	no		csa3,RT,DEDDh,DinG,cas3	Orphan	GGTGGAAGTCGTGCCGCGGCCGAAGGTCGAAACGGCCCAGCCGCTTCCGCCCCG	54	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,DEDDh,DinG,cas3	NA,NA	NA|303aa|up_9|NZ_CP020649.1_2369790_2370699_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|350aa|up_8|NZ_CP020649.1_2371041_2372091_+	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|207aa|up_7|NZ_CP020649.1_2372200_2372821_+	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|428aa|up_6|NZ_CP020649.1_2372817_2374101_+	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|240aa|up_5|NZ_CP020649.1_2374123_2374843_+	pfam11010, DUF2848, Protein of unknown function (DUF2848)	NA|450aa|up_4|NZ_CP020649.1_2374903_2376253_+	PRK07056, PRK07056, amidase; Provisional	NA|278aa|up_3|NZ_CP020649.1_2376271_2377105_+	PRK05463, PRK05463, putative hydro-lyase	NA|292aa|up_2|NZ_CP020649.1_2377238_2378114_+	pfam00563, EAL, EAL domain	NA|1239aa|up_1|NZ_CP020649.1_2378160_2381877_-	PRK09959, PRK09959, acid-sensing system histidine kinase EvgS	NA|210aa|up_0|NZ_CP020649.1_2381885_2382515_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|202aa|down_0|NZ_CP020649.1_2394271_2394877_+	pfam16970, FimA, Type-1 fimbrial protein, A	NA|245aa|down_1|NZ_CP020649.1_2395126_2395861_+	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|874aa|down_2|NZ_CP020649.1_2395923_2398545_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|366aa|down_3|NZ_CP020649.1_2398558_2399656_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|584aa|down_4|NZ_CP020649.1_2399648_2401400_+	pfam03865, ShlB, Haemolysin secretion/activation protein ShlB/FhaC/HecB	NA|434aa|down_5|NZ_CP020649.1_2401425_2402727_-	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|167aa|down_6|NZ_CP020649.1_2402719_2403220_-	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|362aa|down_7|NZ_CP020649.1_2403226_2404312_-	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|433aa|down_8|NZ_CP020649.1_2404464_2405763_-	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|164aa|down_9|NZ_CP020649.1_2405755_2406247_-	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component
GCF_003186185.1_ASM318618v1	NZ_CP020649	Bordetella bronchiseptica strain E010 chromosome, complete genome	5	3197737-3197960	1	CRT	no		csa3,RT,DEDDh,DinG,cas3	Orphan	CAGCTGCTGCGGGGGTGACTGCGGGA	26	0	0	NA	NA	NA	4	4	Orphan	csa3,RT,DEDDh,DinG,cas3	NA|162aa|up_7|NZ_CP020649.1_3193563_3194049_-,NA|87aa|up_6|NZ_CP020649.1_3194240_3194501_-,NA|147aa|up_5|NZ_CP020649.1_3194513_3194954_-,NA|69aa|up_4|NZ_CP020649.1_3194950_3195157_-,NA|159aa|up_2|NZ_CP020649.1_3196091_3196568_-,NA|125aa|down_0|NZ_CP020649.1_3198206_3198581_-,NA|56aa|down_1|NZ_CP020649.1_3198652_3198820_+,NA|85aa|down_2|NZ_CP020649.1_3198905_3199160_+,NA|233aa|down_3|NZ_CP020649.1_3199174_3199873_+,NA|107aa|down_4|NZ_CP020649.1_3199865_3200186_+,NA|71aa|down_6|NZ_CP020649.1_3201342_3201555_+,NA|214aa|down_8|NZ_CP020649.1_3202864_3203506_+,NA|81aa|down_9|NZ_CP020649.1_3203672_3203915_+	NA|473aa|up_9|NZ_CP020649.1_3190878_3192297_-	pfam13264, DUF4055, Domain of unknown function (DUF4055)	NA|426aa|up_8|NZ_CP020649.1_3192299_3193577_-	pfam03237, Terminase_6, Terminase-like family	NA|162aa|up_7|NZ_CP020649.1_3193563_3194049_-	NA	NA|87aa|up_6|NZ_CP020649.1_3194240_3194501_-	NA	NA|147aa|up_5|NZ_CP020649.1_3194513_3194954_-	NA	NA|69aa|up_4|NZ_CP020649.1_3194950_3195157_-	NA	NA|273aa|up_3|NZ_CP020649.1_3195153_3195972_-	cd16962, RuvC, Crossover junction endodeoxyribonuclease RuvC	NA|159aa|up_2|NZ_CP020649.1_3196091_3196568_-	NA	NA|252aa|up_1|NZ_CP020649.1_3196564_3197320_-	pfam11417, Inhibitor_G39P, Loader and inhibitor of phage G40P	NA|121aa|up_0|NZ_CP020649.1_3197319_3197682_-	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|125aa|down_0|NZ_CP020649.1_3198206_3198581_-	NA	NA|56aa|down_1|NZ_CP020649.1_3198652_3198820_+	NA	NA|85aa|down_2|NZ_CP020649.1_3198905_3199160_+	NA	NA|233aa|down_3|NZ_CP020649.1_3199174_3199873_+	NA	NA|107aa|down_4|NZ_CP020649.1_3199865_3200186_+	NA	NA|204aa|down_5|NZ_CP020649.1_3200665_3201277_+	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell	NA|71aa|down_6|NZ_CP020649.1_3201342_3201555_+	NA	NA|126aa|down_7|NZ_CP020649.1_3202383_3202761_+	pfam10546, P63C, P63C domain	NA|214aa|down_8|NZ_CP020649.1_3202864_3203506_+	NA	NA|81aa|down_9|NZ_CP020649.1_3203672_3203915_+	NA
GCF_003186185.1_ASM318618v1	NZ_CP020649	Bordetella bronchiseptica strain E010 chromosome, complete genome	6	3309481-3309604	5	CRISPRCasFinder	no		csa3,RT,DEDDh,DinG,cas3	Orphan	AGGGGGCCTTTTTGCCTTGGGACGGCCCGGCGGCAAAAAAA	41	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,DEDDh,DinG,cas3	NA|267aa|up_9|NZ_CP020649.1_3299807_3300608_+,NA|208aa|up_2|NZ_CP020649.1_3307095_3307719_-,NA|439aa|up_1|NZ_CP020649.1_3307715_3309032_-,NA|88aa|up_0|NZ_CP020649.1_3309028_3309292_-,NA	NA|267aa|up_9|NZ_CP020649.1_3299807_3300608_+	NA	NA|299aa|up_8|NZ_CP020649.1_3300829_3301726_-	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|282aa|up_7|NZ_CP020649.1_3301736_3302582_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|539aa|up_6|NZ_CP020649.1_3302578_3304195_-	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|471aa|up_5|NZ_CP020649.1_3304191_3305604_-	pfam00263, Secretin, Bacterial type II and III secretion system protein	NA|282aa|up_4|NZ_CP020649.1_3305600_3306446_-	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|219aa|up_3|NZ_CP020649.1_3306442_3307099_-	PRK14852, PRK14852, hypothetical protein; Provisional	NA|208aa|up_2|NZ_CP020649.1_3307095_3307719_-	NA	NA|439aa|up_1|NZ_CP020649.1_3307715_3309032_-	NA	NA|88aa|up_0|NZ_CP020649.1_3309028_3309292_-	NA	NA|44aa|down_0|NZ_CP020649.1_3309649_3309781_-	COG5510, COG5510, Predicted small secreted protein [Function unknown]	NA|232aa|down_1|NZ_CP020649.1_3309807_3310503_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|179aa|down_2|NZ_CP020649.1_3310686_3311223_-	PRK01250, PRK01250, inorganic diphosphatase	NA|532aa|down_3|NZ_CP020649.1_3311251_3312847_-	TIGR00540, TPR_hemY_coli, heme biosynthesis-associated TPR protein	NA|395aa|down_4|NZ_CP020649.1_3312850_3314035_-	PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed	NA|275aa|down_5|NZ_CP020649.1_3314072_3314897_-	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme	NA|315aa|down_6|NZ_CP020649.1_3314893_3315838_-	PRK00072, hemC, porphobilinogen deaminase; Reviewed	NA|240aa|down_7|NZ_CP020649.1_3315956_3316676_-	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family	NA|232aa|down_8|NZ_CP020649.1_3316834_3317530_-	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family	NA|294aa|down_9|NZ_CP020649.1_3317804_3318686_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated
GCF_003186185.1_ASM318618v1	NZ_CP020649	Bordetella bronchiseptica strain E010 chromosome, complete genome	7	4126057-4126166	6	CRISPRCasFinder	no		csa3,RT,DEDDh,DinG,cas3	Orphan	GCGCAGCGAGCGCAGCGTGGGGGCATTTTC	30	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,DEDDh,DinG,cas3	NA,NA	NA|245aa|up_9|NZ_CP020649.1_4112718_4113453_+	PRK01305, PRK01305, arginyl-tRNA-protein transferase; Provisional	NA|350aa|up_8|NZ_CP020649.1_4113493_4114543_+	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase	NA|193aa|up_7|NZ_CP020649.1_4114690_4115269_-	TIGR01841, hypothetical_protein, phasin family protein	NA|326aa|up_6|NZ_CP020649.1_4115654_4116632_+	cd13576, PBP2_BugD_Asp, Aspartic acid transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|1465aa|up_5|NZ_CP020649.1_4116725_4121120_-	pfam05785, CNF1, Rho-activating domain of cytotoxic necrotizing factor	NA|283aa|up_4|NZ_CP020649.1_4121320_4122169_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|271aa|up_3|NZ_CP020649.1_4122327_4123140_-	COG1058, CinA, Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]	NA|267aa|up_2|NZ_CP020649.1_4123193_4123994_-	pfam07264, EI24, Etoposide-induced protein 2	NA|128aa|up_1|NZ_CP020649.1_4124055_4124439_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|478aa|up_0|NZ_CP020649.1_4124450_4125884_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|110aa|down_0|NZ_CP020649.1_4126170_4126500_-	COG4392, COG4392, Predicted membrane protein [Function unknown]	NA|223aa|down_1|NZ_CP020649.1_4126502_4127171_-	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|307aa|down_2|NZ_CP020649.1_4127434_4128355_+	PRK06606, PRK06606, branched-chain amino acid transaminase	NA|71aa|down_3|NZ_CP020649.1_4128401_4128614_+	COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_4|NZ_CP020649.1_4128636_4129059_+	pfam13474, SnoaL_3, SnoaL-like domain	NA|367aa|down_5|NZ_CP020649.1_4129075_4130176_+	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]	NA|508aa|down_6|NZ_CP020649.1_4130272_4131796_-	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]	NA|280aa|down_7|NZ_CP020649.1_4131871_4132711_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|294aa|down_8|NZ_CP020649.1_4132732_4133614_-	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)	NA|365aa|down_9|NZ_CP020649.1_4133695_4134790_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane
GCF_003186185.1_ASM318618v1	NZ_CP020649	Bordetella bronchiseptica strain E010 chromosome, complete genome	8	4209876-4209960	7	CRISPRCasFinder	no		csa3,RT,DEDDh,DinG,cas3	Orphan	CTGTCCCCGCGGGGACAGGCACC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,DEDDh,DinG,cas3	NA,NA	NA|585aa|up_9|NZ_CP020649.1_4197838_4199593_-	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|300aa|up_8|NZ_CP020649.1_4199699_4200599_+	PRK11013, PRK11013, DNA-binding transcriptional regulator LysR; Provisional	NA|328aa|up_7|NZ_CP020649.1_4200663_4201647_-	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|327aa|up_6|NZ_CP020649.1_4201782_4202763_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|464aa|up_5|NZ_CP020649.1_4202778_4204170_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|179aa|up_4|NZ_CP020649.1_4204321_4204858_+	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|462aa|up_3|NZ_CP020649.1_4204788_4206174_+	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|213aa|up_2|NZ_CP020649.1_4206315_4206954_-	PRK10847, PRK10847, DedA family protein	NA|629aa|up_1|NZ_CP020649.1_4207040_4208927_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|314aa|up_0|NZ_CP020649.1_4208923_4209865_+	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|350aa|down_0|NZ_CP020649.1_4209970_4211020_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|234aa|down_1|NZ_CP020649.1_4211272_4211974_+	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated	NA|233aa|down_2|NZ_CP020649.1_4211970_4212669_+	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|452aa|down_3|NZ_CP020649.1_4212669_4214025_+	TIGR01942, pcnB, poly(A) polymerase	NA|164aa|down_4|NZ_CP020649.1_4214021_4214513_+	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	NA|319aa|down_5|NZ_CP020649.1_4214532_4215489_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|465aa|down_6|NZ_CP020649.1_4215515_4216910_-	pfam03972, MmgE_PrpD, MmgE/PrpD family	NA|701aa|down_7|NZ_CP020649.1_4216906_4219009_-	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|348aa|down_8|NZ_CP020649.1_4219179_4220223_+	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|248aa|down_9|NZ_CP020649.1_4220266_4221010_+	COG1802, GntR, Transcriptional regulators [Transcription]
GCF_003186185.1_ASM318618v1	NZ_CP020649	Bordetella bronchiseptica strain E010 chromosome, complete genome	9	4419047-4419140	8	CRISPRCasFinder	no	DEDDh	csa3,RT,DEDDh,DinG,cas3	Unclear	GTGCCTGTCCCCGCCGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,DEDDh,DinG,cas3	NA,NA	NA|545aa|up_9|NZ_CP020649.1_4405819_4407454_+	cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)	NA|398aa|up_8|NZ_CP020649.1_4407502_4408696_-	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase	NA|391aa|up_7|NZ_CP020649.1_4409781_4410954_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|326aa|up_6|NZ_CP020649.1_4411079_4412057_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|324aa|up_5|NZ_CP020649.1_4412067_4413039_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|262aa|up_4|NZ_CP020649.1_4413105_4413891_-	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|411aa|up_3|NZ_CP020649.1_4413883_4415116_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|252aa|up_2|NZ_CP020649.1_4415311_4416067_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|173aa|up_1|NZ_CP020649.1_4416177_4416696_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|708aa|up_0|NZ_CP020649.1_4416692_4418816_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|157aa|down_0|NZ_CP020649.1_4419226_4419697_-	pfam00582, Usp, Universal stress protein family	NA|115aa|down_1|NZ_CP020649.1_4419785_4420130_-	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|467aa|down_2|NZ_CP020649.1_4420229_4421630_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|305aa|down_3|NZ_CP020649.1_4421818_4422733_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|220aa|down_4|NZ_CP020649.1_4422729_4423389_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|308aa|down_5|NZ_CP020649.1_4423478_4424402_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|152aa|down_6|NZ_CP020649.1_4424407_4424863_-	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|368aa|down_7|NZ_CP020649.1_4424859_4425963_-	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria	NA|90aa|down_8|NZ_CP020649.1_4425921_4426191_+	pfam04138, GtrA, GtrA-like protein	NA|540aa|down_9|NZ_CP020649.1_4426150_4427770_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
GCF_003186185.1_ASM318618v1	NZ_CP020649	Bordetella bronchiseptica strain E010 chromosome, complete genome	10	4691451-4691534	9	CRISPRCasFinder	no		csa3,RT,DEDDh,DinG,cas3	Orphan	GGTGCCTGTCCCCGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,DEDDh,DinG,cas3	NA,NA	NA|429aa|up_9|NZ_CP020649.1_4683457_4684744_-	pfam00034, Cytochrom_C, Cytochrome c	NA|251aa|up_8|NZ_CP020649.1_4684754_4685507_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|291aa|up_7|NZ_CP020649.1_4685678_4686551_+	PRK05416, PRK05416, RNase adapter RapZ	NA|317aa|up_6|NZ_CP020649.1_4686547_4687498_+	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|191aa|up_5|NZ_CP020649.1_4687494_4688067_-	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|313aa|up_4|NZ_CP020649.1_4688063_4689002_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|178aa|up_3|NZ_CP020649.1_4689068_4689602_+	PRK14685, PRK14685, hypothetical protein; Provisional	NA|201aa|up_2|NZ_CP020649.1_4689601_4690204_+	PRK13936, PRK13936, phosphoheptose isomerase; Provisional	NA|248aa|up_1|NZ_CP020649.1_4690200_4690944_+	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|164aa|up_0|NZ_CP020649.1_4690940_4691432_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|263aa|down_0|NZ_CP020649.1_4691588_4692377_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|301aa|down_1|NZ_CP020649.1_4692638_4693541_+	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|249aa|down_2|NZ_CP020649.1_4693540_4694287_+	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p	NA|192aa|down_3|NZ_CP020649.1_4694336_4694912_+	PRK09480, slmA, division inhibitor protein; Provisional	NA|498aa|down_4|NZ_CP020649.1_4695124_4696618_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|352aa|down_5|NZ_CP020649.1_4696628_4697684_+	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase	NA|379aa|down_6|NZ_CP020649.1_4697709_4698846_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|651aa|down_7|NZ_CP020649.1_4698842_4700795_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|188aa|down_8|NZ_CP020649.1_4700808_4701372_-	TIGR03426, shape_MreD, rod shape-determining protein MreD	NA|295aa|down_9|NZ_CP020649.1_4701358_4702243_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional
