The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP020649	Bordetella bronchiseptica strain E010 chromosome, complete genome	5204290	1729774	1772199	5204290	terminase,protease,capsid	Bordetella_phage(95.83%)	48	NA	NA
WP_015973963.1|1729774_1730980_-	DUF3596 domain-containing protein	NA	Q774Z5	Bordetella_phage	100.0	2.2e-233
WP_015973962.1|1730955_1731165_-	hypothetical protein	NA	Q774Z6	Bordetella_phage	100.0	2.4e-31
WP_015973961.1|1731157_1731385_-	DUF3310 domain-containing protein	NA	Q774Z7	Bordetella_phage	100.0	5.8e-39
WP_015973960.1|1731381_1732776_-	DEAD/DEAH box helicase	NA	Q774Z8	Bordetella_phage	100.0	4.2e-273
WP_015973959.1|1732772_1732997_-	hypothetical protein	NA	Q774Z9	Bordetella_phage	100.0	2.2e-38
WP_015973958.1|1732993_1733200_-	hypothetical protein	NA	Q775A0	Bordetella_phage	100.0	5.3e-31
WP_015973957.1|1733196_1733415_-	hypothetical protein	NA	Q775A1	Bordetella_phage	100.0	3.4e-36
WP_015973956.1|1733411_1733675_-	VRR-NUC domain-containing protein	NA	Q775A2	Bordetella_phage	100.0	5.3e-44
WP_015973955.1|1733763_1735830_-	hypothetical protein	NA	Q775A3	Bordetella_phage	100.0	0.0e+00
WP_015973954.1|1735829_1736018_-	hypothetical protein	NA	Q775A4	Bordetella_phage	100.0	2.3e-33
WP_015973953.1|1736135_1736684_-	DUF2815 family protein	NA	Q775A5	Bordetella_phage	100.0	1.2e-98
WP_015974059.1|1736856_1738113_-	DUF2800 domain-containing protein	NA	Q775A7	Bordetella_phage	99.8	1.2e-237
WP_015973950.1|1738109_1738541_-	hypothetical protein	NA	Q775A8	Bordetella_phage	100.0	1.2e-74
WP_033475831.1|1738537_1739563_-	hypothetical protein	NA	Q775A9	Bordetella_phage	90.6	2.5e-89
WP_015973948.1|1739567_1740044_-	hypothetical protein	NA	Q775B0	Bordetella_phage	100.0	4.5e-41
WP_015973947.1|1740049_1740481_-	hypothetical protein	NA	Q775B1	Bordetella_phage	100.0	8.4e-71
WP_015973946.1|1740612_1740828_-	hypothetical protein	NA	Q775B2	Bordetella_phage	100.0	3.7e-35
WP_015973915.1|1740824_1741496_-	LexA family transcriptional regulator	NA	Q94MM0	Bordetella_phage	100.0	9.5e-130
WP_015973945.1|1741580_1741829_+	helix-turn-helix domain-containing protein	NA	Q775B3	Bordetella_phage	100.0	6.8e-41
WP_015973944.1|1741825_1742581_+	site-specific DNA-methyltransferase	NA	Q775B4	Bordetella_phage	100.0	2.1e-146
WP_015973943.1|1742597_1745162_+	Bbp29	NA	Q775B5	Bordetella_phage	100.0	0.0e+00
WP_015974052.1|1745173_1745464_-	hypothetical protein	NA	Q775B6	Bordetella_phage	100.0	2.4e-53
WP_015973941.1|1745765_1746002_+	hypothetical protein	NA	Q775B7	Bordetella_phage	100.0	4.8e-36
WP_015973940.1|1746020_1746605_+	hypothetical protein	NA	Q775B8	Bordetella_phage	100.0	1.2e-91
WP_080702946.1|1746703_1748203_+|terminase	terminase	terminase	Q775B9	Bordetella_phage	99.8	3.6e-302
WP_015973938.1|1748246_1748711_+	GNAT family N-acetyltransferase	NA	Q775C0	Bordetella_phage	100.0	9.6e-81
WP_015973937.1|1748707_1749166_+	hypothetical protein	NA	Q775C1	Bordetella_phage	100.0	4.9e-77
WP_015973936.1|1749169_1749577_+	hypothetical protein	NA	Q775C2	Bordetella_phage	100.0	1.3e-17
WP_015973935.1|1749578_1751246_+	hypothetical protein	NA	T1S9Z7	Salmonella_phage	45.3	4.6e-133
WP_015973934.1|1751258_1751588_+	hypothetical protein	NA	Q775C4	Bordetella_phage	100.0	5.4e-54
WP_015973933.1|1751630_1751978_+	hypothetical protein	NA	Q775C5	Bordetella_phage	100.0	4.1e-60
WP_015973932.1|1751934_1752624_+|protease	putative protease	protease	Q775C6	Bordetella_phage	100.0	1.0e-110
WP_015973931.1|1752637_1753633_+|capsid	phage capsid protein	capsid	Q775C7	Bordetella_phage	100.0	2.3e-188
WP_015973930.1|1753688_1754111_+	hypothetical protein	NA	Q775C8	Bordetella_phage	100.0	5.9e-69
WP_080705833.1|1754138_1754330_+	hypothetical protein	NA	Q775C9	Bordetella_phage	98.4	1.0e-28
WP_015973928.1|1754405_1755077_+	hypothetical protein	NA	Q775D0	Bordetella_phage	100.0	1.7e-126
WP_015973927.1|1755076_1757122_+	hypothetical protein	NA	Q775D1	Bordetella_phage	100.0	0.0e+00
WP_015974050.1|1757181_1757829_+	hypothetical protein	NA	Q775D2	Bordetella_phage	100.0	5.6e-79
WP_015973925.1|1757834_1759997_+	transglycosylase SLT domain-containing protein	NA	Q775D3	Bordetella_phage	100.0	0.0e+00
WP_015973924.1|1759993_1766152_+	crystallin beta/gamma motif-containing protein	NA	Q775D4	Bordetella_phage	100.0	0.0e+00
WP_015973923.1|1766213_1767740_+	hypothetical protein	NA	Q775D5	Bordetella_phage	100.0	7.5e-114
WP_033475832.1|1767755_1768901_+	major tropism determinant	NA	F4YCR9	Synechococcus_phage	36.0	5.0e-38
WP_015973921.1|1768931_1769318_+	diversity-generating retroelement bAvd family protein	NA	Q775D7	Bordetella_phage	100.0	6.6e-67
WP_015973920.1|1769596_1770583_+	reverse transcriptase	NA	Q775D8	Bordetella_phage	100.0	6.6e-196
WP_015973919.1|1770563_1770812_+	hypothetical protein	NA	Q775D9	Bordetella_phage	100.0	1.6e-42
WP_015973918.1|1770821_1771073_+	hypothetical protein	NA	Q775E0	Bordetella_phage	100.0	4.4e-40
WP_015973917.1|1771074_1771566_+	N-acetylmuramidase	NA	Q775E1	Bordetella_phage	100.0	1.5e-92
WP_080702951.1|1771626_1772199_+	hypothetical protein	NA	Q775E2	Bordetella_phage	100.0	4.6e-85
>prophage 2
NZ_CP020649	Bordetella bronchiseptica strain E010 chromosome, complete genome	5204290	2348247	2356313	5204290	tRNA	Moraxella_phage(28.57%)	9	NA	NA
WP_003811006.1|2348247_2348835_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	46.8	2.1e-16
WP_003811007.1|2348853_2349237_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811009.1|2349372_2350398_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_015063884.1|2350603_2351896_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	2.2e-66
WP_003811013.1|2352030_2353071_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.6	9.3e-92
WP_003811015.1|2353115_2353763_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_003811017.1|2353888_2354647_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	6.2e-69
WP_080704200.1|2354721_2355411_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
WP_003811022.1|2355428_2356313_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
>prophage 3
NZ_CP020649	Bordetella bronchiseptica strain E010 chromosome, complete genome	5204290	3175475	3197320	5204290	terminase,tail	Pseudomonas_phage(13.64%)	29	NA	NA
WP_033448632.1|3175475_3179432_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	41.3	5.5e-217
WP_010931430.1|3179424_3179814_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3179810_3180344_-	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3180411_3180771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033452995.1|3180780_3183216_-|tail	phage tail tape measure protein	tail	A0A1V0E821	Vibrio_phage	34.8	1.2e-97
WP_015039677.1|3183241_3183532_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	43.0	2.0e-15
WP_003813412.1|3183549_3183879_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_015039676.1|3183888_3184407_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3184661_3185162_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_015039675.1|3185169_3185592_-	DUF4128 domain-containing protein	NA	I6PDJ8	Cronobacter_phage	29.2	2.6e-08
WP_015039674.1|3185588_3185987_-	hypothetical protein	NA	A0A088FBW9	Salmonella_phage	37.8	2.6e-18
WP_015063599.1|3185983_3186379_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	6.0e-07
WP_010931440.1|3186378_3186579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015039673.1|3186580_3187060_-	hypothetical protein	NA	A0A088C4X4	Shewanella_sp._phage	39.3	1.2e-12
WP_015039672.1|3187053_3187503_-	hypothetical protein	NA	I6WLM5	Burkholderia_virus	51.6	2.2e-29
WP_033448637.1|3187565_3187817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015039670.1|3187826_3188795_-	hypothetical protein	NA	R9TJ64	Synechococcus_phage	72.3	1.3e-124
WP_015039669.1|3188821_3189424_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	47.5	2.6e-30
WP_014905397.1|3189546_3189789_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	54.5	1.5e-16
WP_015039668.1|3189794_3190850_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.8	5.2e-98
WP_033448642.1|3190878_3192297_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	4.8e-99
WP_010931447.1|3192299_3193577_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_015039666.1|3193563_3194049_-	hypothetical protein	NA	C7U0W1	Enterobacteria_phage	62.3	1.2e-38
WP_015039665.1|3194240_3194501_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015039664.1|3194513_3194954_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015039663.1|3194950_3195157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015063596.1|3195153_3195972_-	hypothetical protein	NA	K4ICN3	Acidithiobacillus_phage	43.8	1.2e-22
WP_014905401.1|3196091_3196568_-	phage protein	NA	NA	NA	NA	NA
WP_015063595.1|3196564_3197320_-	hypothetical protein	NA	U6C6D0	Ralstonia_phage	38.0	1.7e-26
