The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP029627	Staphylococcus aureus strain MOK042 chromosome, complete genome	2844513	311938	355542	2844513	plate,holin,integrase,capsid,terminase,tail,protease,portal,head	Staphylococcus_phage(67.74%)	63	311828:311845	356276:356293
311828:311845	attL	ATCATACAAGGATGGGAT	NA	NA	NA	NA
WP_000264745.1|311938_313144_-|integrase	site-specific integrase	integrase	Q4ZBP1	Staphylococcus_phage	99.8	1.9e-221
WP_000191466.1|313269_313884_+	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_074370993.1|313880_314027_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	93.8	1.7e-15
WP_000449655.1|314116_314512_-	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_000755718.1|314540_314975_-	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	100.0	1.2e-24
WP_000525000.1|314992_315454_-	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	99.3	1.3e-85
WP_000429766.1|315466_315796_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_001115060.1|315956_316148_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_001001356.1|316231_316408_+	hypothetical protein	NA	A0A2I6PEL1	Staphylococcus_phage	100.0	8.8e-27
WP_001548903.1|316404_316644_-	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	100.0	6.7e-38
WP_001036299.1|316690_316906_+	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001124198.1|316930_317194_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001285948.1|317206_317368_+	DUF1270 domain-containing protein	NA	A9CR58	Staphylococcus_phage	98.1	1.1e-20
WP_000174994.1|317446_317770_+	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
WP_000985976.1|317784_318147_+	hypothetical protein	NA	A0A2I6PF03	Staphylococcus_phage	100.0	4.9e-56
WP_107378073.1|318143_319310_+	DUF2800 domain-containing protein	NA	A7TWG4	Staphylococcus_phage	99.2	7.7e-220
WP_000647288.1|319336_319891_+	DUF2815 family protein	NA	M9QRS1	Staphylococcus_phage	100.0	1.4e-99
WP_110166419.1|319959_321912_+	DNA polymerase	NA	B7T0G8	Staphylococcus_virus	98.0	0.0e+00
WP_001164628.1|321924_322110_+	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	98.4	2.1e-26
WP_070008564.1|322109_322511_+	PVL family protein	NA	B7T0H0	Staphylococcus_virus	100.0	1.2e-68
WP_015994745.1|322510_322768_+	DUF3310 domain-containing protein	NA	B7T0H1	Staphylococcus_virus	100.0	7.5e-43
WP_015994746.1|322770_322971_+	hypothetical protein	NA	B7T0H2	Staphylococcus_virus	100.0	3.7e-29
WP_015994747.1|322967_323657_+	N-6 DNA methylase	NA	B7T0H3	Staphylococcus_virus	100.0	6.1e-132
WP_015994748.1|323670_323877_+	hypothetical protein	NA	B7T0H4	Staphylococcus_virus	100.0	7.8e-35
WP_015994749.1|323879_324308_+	hypothetical protein	NA	B7T0H5	Staphylococcus_virus	100.0	1.0e-73
WP_000983951.1|324304_324499_+	hypothetical protein	NA	B7T0H6	Staphylococcus_virus	100.0	1.1e-27
WP_070008563.1|324495_324780_+	hypothetical protein	NA	A0A059T7K0	Staphylococcus_phage	94.7	2.0e-25
WP_015994751.1|324772_325021_+	DUF1024 family protein	NA	B7T0H8	Staphylococcus_virus	100.0	4.1e-38
WP_015994752.1|325013_325574_+	dUTP diphosphatase	NA	B7T0H9	Staphylococcus_virus	100.0	1.8e-102
WP_029265348.1|325610_325811_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015994753.1|325810_326014_+	DUF1381 domain-containing protein	NA	B7T0I0	Staphylococcus_virus	100.0	3.5e-19
WP_015994754.1|326010_326163_+	hypothetical protein	NA	B7T0I1	Staphylococcus_virus	100.0	8.9e-20
WP_000265258.1|326230_326431_+	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_069990205.1|326482_328930_+	virulence-associated E family protein	NA	B7T0I3	Staphylococcus_virus	99.9	0.0e+00
WP_015978074.1|329032_329137_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	2.7e-12
WP_015978062.1|329270_329561_+	VRR-NUC domain-containing protein	NA	B7T0I4	Staphylococcus_virus	100.0	4.9e-51
WP_110161655.1|329541_330909_+	DEAD/DEAH box helicase	NA	B7T0I5	Staphylococcus_virus	99.6	3.5e-264
WP_000513702.1|330921_331359_+	transcriptional regulator	NA	B7T0I6	Staphylococcus_virus	100.0	6.1e-77
WP_015994756.1|331515_331830_+	HNH endonuclease	NA	A0A0K1LL59	Staphylococcus_phage	100.0	4.2e-56
WP_000778933.1|331957_332263_+|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_110166288.1|332252_333944_+|terminase	terminase large subunit	terminase	Q9B0E3	Staphylococcus_virus	99.6	0.0e+00
WP_031773897.1|333948_335187_+|portal	phage portal protein	portal	A0A2I6PF26	Staphylococcus_phage	99.5	1.7e-233
WP_031883906.1|335170_335944_+|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	97.7	1.9e-134
WP_031883907.1|335955_337119_+|capsid	phage major capsid protein	capsid	Q4ZCT8	Staphylococcus_virus	99.5	2.7e-217
WP_000050977.1|337187_337466_+|head,tail	phage gp6-like head-tail connector protein	head,tail	R4WAL3	Staphylococcus_phage	100.0	3.5e-46
WP_000395499.1|337477_337810_+	hypothetical protein	NA	A0A2I6PEH8	Staphylococcus_phage	100.0	3.1e-57
WP_110166289.1|337806_338208_+	hypothetical protein	NA	R4WAN5	Staphylococcus_phage	99.2	4.0e-67
WP_001636966.1|338208_338604_+	DUF3168 domain-containing protein	NA	R4WAV1	Staphylococcus_phage	99.2	4.4e-66
WP_000807543.1|338638_339280_+|tail	tail protein	tail	A0A2I6PE59	Staphylococcus_phage	97.2	4.7e-118
WP_064272832.1|339371_339827_+	Ig domain-containing protein	NA	Q9B0D4	Staphylococcus_phage	97.4	2.0e-75
WP_000589165.1|339884_340235_+	hypothetical protein	NA	A0A2I6PDE6	Staphylococcus_phage	100.0	1.1e-55
WP_000438833.1|340276_340435_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_110166290.1|340448_346649_+|tail	phage tail tape measure protein	tail	Q4ZCL0	Staphylococcus_virus	98.6	0.0e+00
WP_031865253.1|346648_347473_+|tail	phage tail family protein	tail	A0A2I6PEE1	Staphylococcus_phage	100.0	5.4e-159
WP_000384462.1|347481_349065_+|tail	phage tail protein	tail	Q8SDP1	Staphylococcus_virus	100.0	7.1e-309
WP_000179860.1|349064_349355_+	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
WP_031906531.1|349370_351281_+	hypothetical protein	NA	A0A2I6PF35	Staphylococcus_phage	99.8	0.0e+00
WP_103213504.1|351280_352747_+|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	99.6	6.4e-272
WP_001166599.1|352746_353136_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000916020.1|353128_353293_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_000466784.1|353338_353638_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000339146.1|353773_354076_+|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000930258.1|354087_355542_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N6WMR3	Staphylococcus_phage	100.0	3.0e-290
356276:356293	attR	ATCATACAAGGATGGGAT	NA	NA	NA	NA
>prophage 2
NZ_CP029627	Staphylococcus aureus strain MOK042 chromosome, complete genome	2844513	421564	433240	2844513	capsid,integrase	Staphylococcus_phage(30.0%)	14	424586:424606	437927:437947
WP_000264071.1|421564_423031_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000424963.1|423055_424597_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
424586:424606	attL	GAGTGGGAATAATTATATATA	NA	NA	NA	NA
WP_031919586.1|424690_425827_-|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	42.5	1.7e-75
WP_031588064.1|425910_426297_-	helix-turn-helix transcriptional regulator	NA	U3PIS7	Lactobacillus_phage	41.2	3.8e-06
WP_031588042.1|426429_426669_+	helix-turn-helix transcriptional regulator	NA	Q38329	Lactococcus_phage	40.0	2.5e-08
WP_000080597.1|426665_426926_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162852058.1|426972_427119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031774950.1|427111_427336_+	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	58.8	7.5e-15
WP_001103957.1|427336_427630_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	46.1	1.7e-14
WP_031593609.1|427720_430093_+	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	3.7e-136
WP_001082128.1|430762_431107_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	64.3	1.2e-40
WP_000884055.1|431331_431538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031588018.1|431524_432583_+|capsid	phage capsid protein	capsid	NA	NA	NA	NA
WP_000253083.1|432748_433240_+	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	39.9	3.0e-24
437927:437947	attR	GAGTGGGAATAATTATATATA	NA	NA	NA	NA
>prophage 3
NZ_CP029627	Staphylococcus aureus strain MOK042 chromosome, complete genome	2844513	760432	768252	2844513		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|760432_761488_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|761487_762174_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|762148_762622_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093556.1|762963_763404_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|763683_764268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_110166308.1|764366_765080_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.1	8.5e-52
WP_000941336.1|765083_765503_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|765504_766173_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604515.1|766523_767117_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	1.2e-38
WP_001217794.1|767100_768252_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	3.5e-23
>prophage 4
NZ_CP029627	Staphylococcus aureus strain MOK042 chromosome, complete genome	2844513	780223	794953	2844513		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663025.1|780223_781282_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.3	1.5e-20
WP_000197275.1|781576_782119_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|782798_783716_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031797439.1|783805_783907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|783984_785490_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|785830_786331_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|786350_787217_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|788017_788416_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|788378_790484_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|790601_791573_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|792086_792242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031929878.1|792280_793252_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.6	1.6e-138
WP_001245577.1|793238_794195_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|794191_794953_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 5
NZ_CP029627	Staphylococcus aureus strain MOK042 chromosome, complete genome	2844513	1053691	1062164	2844513		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1053691_1054174_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010410.1|1054160_1055285_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1055288_1055993_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1055992_1056256_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|1056257_1056929_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032740.1|1056921_1059111_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483720.1|1059089_1060574_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000030811.1|1060566_1061595_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238669.1|1061597_1062164_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 6
NZ_CP029627	Staphylococcus aureus strain MOK042 chromosome, complete genome	2844513	1235821	1318478	2844513	plate,holin,capsid,terminase,tail,protease,tRNA,portal,head	Staphylococcus_phage(81.94%)	98	NA	NA
WP_000861305.1|1235821_1237213_-	recombinase family protein	NA	A0A059T616	Staphylococcus_phage	100.0	2.2e-266
WP_110166333.1|1237270_1237774_-	hypothetical protein	NA	A0A059T7N4	Staphylococcus_phage	99.4	8.9e-48
WP_001077670.1|1237777_1238269_-	hypothetical protein	NA	A0A059T7J5	Staphylococcus_phage	100.0	1.3e-83
WP_000521396.1|1238289_1238748_-	hypothetical protein	NA	A0A059T660	Staphylococcus_phage	100.0	1.8e-84
WP_000455972.1|1238769_1239096_-	helix-turn-helix transcriptional regulator	NA	A0A059T5A2	Staphylococcus_phage	100.0	7.0e-54
WP_001114715.1|1239258_1239468_+	helix-turn-helix transcriptional regulator	NA	A0A059T617	Staphylococcus_phage	100.0	4.8e-32
WP_001157021.1|1239506_1240220_+	phage repressor protein	NA	A0A059T7N7	Staphylococcus_phage	99.6	1.0e-129
WP_000048121.1|1240321_1240483_+	DUF1270 family protein	NA	A0A059T7J6	Staphylococcus_phage	100.0	1.9e-20
WP_000291075.1|1240574_1240835_+	DUF1108 family protein	NA	A0A059T5A3	Staphylococcus_phage	100.0	1.2e-43
WP_000815401.1|1240844_1241066_+	DUF2483 family protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_110166334.1|1241058_1241838_+	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	97.7	7.6e-139
WP_000704707.1|1241868_1242420_+	hypothetical protein	NA	Q4ZBM4	Staphylococcus_phage	99.5	1.7e-100
WP_001199438.1|1242432_1243125_+	hypothetical protein	NA	Q8SDW3	Staphylococcus_phage	99.1	5.2e-131
WP_000504991.1|1243096_1243930_+	phage replisome organizer N-terminal domain-containing protein	NA	A0A0H3U476	Staphylococcus_phage	100.0	2.1e-126
WP_000443353.1|1243942_1244728_+	ATP-binding protein	NA	A0A0H4J332	Staphylococcus_phage	100.0	1.9e-145
WP_000628837.1|1244724_1244883_+	hypothetical protein	NA	A0A0H3U301	Staphylococcus_phage	100.0	3.4e-22
WP_001123685.1|1244895_1245117_+	DUF3269 family protein	NA	A0A0N9BAW8	Staphylococcus_phage	100.0	9.9e-36
WP_000049801.1|1245127_1245532_+	DUF1064 domain-containing protein	NA	G4KNP2	Staphylococcus_phage	99.3	2.1e-68
WP_001187254.1|1245536_1245722_+	DUF3113 family protein	NA	Q4ZA46	Staphylococcus_virus	100.0	4.1e-27
WP_070045555.1|1245722_1246232_+	hypothetical protein	NA	C8CGZ9	Staphylococcus_phage	91.1	1.9e-42
WP_000022736.1|1246231_1246486_+	DUF3310 domain-containing protein	NA	Q6R831	Staphylococcus_virus	100.0	1.3e-42
WP_060474161.1|1246485_1246734_+	hypothetical protein	NA	A0A2K9VBX5	Staphylococcus_phage	100.0	1.2e-40
WP_000693989.1|1246747_1246954_+	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
WP_000695756.1|1246956_1247361_+	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	100.0	4.2e-72
WP_000983953.1|1247357_1247552_+	hypothetical protein	NA	A0A0E3XCV8	Staphylococcus_phage	100.0	2.5e-27
WP_000982706.1|1247548_1248001_+	hypothetical protein	NA	A0A0E3XBJ3	Staphylococcus_phage	100.0	1.4e-81
WP_110166335.1|1247997_1248501_+	hypothetical protein	NA	A0A1X9H0D4	Staphylococcus_phage	94.0	3.7e-86
WP_110166336.1|1248692_1248944_+	DUF1024 family protein	NA	A0A2H4PQK1	Staphylococcus_phage	97.6	5.4e-38
WP_000028424.1|1248933_1249107_+	hypothetical protein	NA	A0A2H4PQJ2	Staphylococcus_phage	100.0	1.8e-24
WP_000454994.1|1249107_1249389_+	hypothetical protein	NA	A0A2I6PDX3	Staphylococcus_phage	100.0	8.5e-48
WP_000889683.1|1249389_1249551_+	hypothetical protein	NA	A0A2I6PDW5	Staphylococcus_phage	100.0	2.4e-23
WP_025920701.1|1249565_1250099_+	dUTP diphosphatase	NA	E0Y3R2	Staphylococcus_virus	99.4	1.3e-94
WP_110166337.1|1250135_1250330_+	DUF1381 domain-containing protein	NA	A1KX86	Staphylococcus_virus	96.2	6.7e-20
WP_001072795.1|1250326_1250530_+	hypothetical protein	NA	A0A0N9BAX5	Staphylococcus_phage	100.0	5.2e-31
WP_000608281.1|1250522_1250759_+	hypothetical protein	NA	A7TWI0	Staphylococcus_phage	98.7	1.4e-35
WP_001568228.1|1250748_1251138_+	hypothetical protein	NA	M9QX07	Staphylococcus_phage	100.0	2.8e-65
WP_000595257.1|1251134_1251308_+	transcriptional activator RinB	NA	Q4ZBK0	Staphylococcus_phage	100.0	6.4e-22
WP_000286968.1|1251308_1251710_+	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_000594088.1|1252062_1252557_+|terminase	terminase small subunit	terminase	A0A0N9BAX3	Staphylococcus_phage	100.0	3.4e-84
WP_001037586.1|1252549_1253773_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0H3U2R6	Staphylococcus_phage	100.0	7.5e-242
WP_110166338.1|1253769_1255194_+|portal	phage portal protein	portal	A0A0E3T9I6	Staphylococcus_phage	99.2	5.3e-271
WP_000609643.1|1255162_1256113_+|head	phage head morphogenesis protein	head	A0A0H3U2Z4	Staphylococcus_phage	98.1	9.8e-173
WP_001019218.1|1256208_1256793_+	DUF4355 domain-containing protein	NA	M9NRJ1	Staphylococcus_phage	99.0	2.9e-74
WP_000235170.1|1256809_1257724_+|capsid	phage major capsid protein	capsid	A0A059T7K3	Staphylococcus_phage	99.3	1.3e-169
WP_000002930.1|1257735_1257879_+	hypothetical protein	NA	A0A059T673	Staphylococcus_phage	100.0	7.9e-18
WP_070008600.1|1257884_1258235_+|head,tail	phage head-tail adapter protein	head,tail	A0A059T5B0	Staphylococcus_phage	100.0	6.4e-61
WP_070045497.1|1258246_1258582_+|head	phage head closure protein	head	A0A059T625	Staphylococcus_phage	100.0	8.8e-60
WP_061736442.1|1258568_1258976_+	HK97 gp10 family phage protein	NA	A0A059T7Q2	Staphylococcus_phage	100.0	2.0e-74
WP_000270192.1|1258988_1259414_+	DUF3168 domain-containing protein	NA	Q4ZBQ9	Staphylococcus_phage	100.0	5.5e-75
WP_000057585.1|1259414_1259972_+	hypothetical protein	NA	A0A059T675	Staphylococcus_phage	100.0	4.1e-102
WP_000134336.1|1260038_1260551_+	hypothetical protein	NA	A0A059T5B1	Staphylococcus_phage	100.0	5.4e-93
WP_041201307.1|1260595_1260880_+	hypothetical protein	NA	A0A059T626	Staphylococcus_phage	98.9	2.3e-45
WP_070001870.1|1260883_1264027_+|terminase	terminase	terminase	A0A059T7Q4	Staphylococcus_phage	99.4	0.0e+00
WP_069993703.1|1264041_1264983_+|tail	phage tail family protein	tail	A0A059T7K5	Staphylococcus_phage	98.7	5.3e-179
WP_070019458.1|1264993_1266880_+|tail	phage tail protein	tail	A0A059T677	Staphylococcus_phage	98.1	0.0e+00
WP_070001872.1|1266892_1268791_+	hypothetical protein	NA	Q4ZA90	Staphylococcus_virus	92.6	0.0e+00
WP_110166339.1|1268790_1270614_+|plate	phage baseplate upper protein	plate	S4V7L3	Staphylococcus_phage	96.9	2.1e-309
WP_069993680.1|1270613_1271000_+	DUF2977 domain-containing protein	NA	W5R9M2	Staphylococcus_phage	83.3	1.9e-45
WP_000916018.1|1270992_1271169_+	XkdX family protein	NA	M9QX31	Staphylococcus_phage	88.0	8.8e-19
WP_000467322.1|1271208_1271514_+	DUF2951 family protein	NA	A0A059T679	Staphylococcus_phage	100.0	5.2e-43
WP_069993700.1|1276537_1276975_+|holin	phage holin	holin	M9QTA6	Staphylococcus_phage	97.9	2.6e-72
WP_069993701.1|1276955_1278401_+	SH3 domain-containing protein	NA	A0A059T7Q7	Staphylococcus_phage	97.5	4.7e-291
WP_000201922.1|1278805_1278982_+	hypothetical protein	NA	C8CH39	Staphylococcus_phage	100.0	1.2e-23
WP_000051376.1|1278978_1279593_+	hypothetical protein	NA	C8CH40	Staphylococcus_phage	100.0	1.0e-109
WP_000268754.1|1279978_1280254_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_001261991.1|1280441_1280945_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000687328.1|1280944_1281682_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000181404.1|1281784_1282135_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000915236.1|1282774_1285381_-	lipoteichoic acid-specific glycosyltransferase YfhO	NA	NA	NA	NA	NA
WP_000236722.1|1285781_1286666_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_000176409.1|1286649_1287417_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	44.1	2.5e-25
WP_001020801.1|1287525_1288692_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_000110251.1|1288713_1289622_+	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.2	3.0e-17
WP_000931873.1|1289945_1290818_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_001557331.1|1290991_1293067_+	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.2	1.7e-105
WP_000195254.1|1293222_1294530_+|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_001015597.1|1294950_1295847_+	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	31.5	3.6e-31
WP_000072681.1|1295843_1296389_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_000379054.1|1296454_1297858_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.6	4.9e-27
WP_000055337.1|1297882_1298656_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_001790530.1|1298706_1298799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000268485.1|1298997_1299765_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_001789890.1|1299798_1299912_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000201387.1|1299946_1300828_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_000057330.1|1300964_1301687_+	UMP kinase	NA	NA	NA	NA	NA
WP_001280006.1|1301705_1302260_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_000473705.1|1302632_1303403_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
WP_000868413.1|1303409_1304192_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_110166340.1|1304378_1305665_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_000814094.1|1305684_1307388_+|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_078315529.1|1307651_1311962_+	PolC-type DNA polymerase III	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
WP_000036633.1|1312251_1312719_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_000097460.1|1312739_1313915_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000727423.1|1313935_1314220_+	YlxR family protein	NA	NA	NA	NA	NA
WP_000020853.1|1314216_1314534_+	YlxQ family RNA-binding protein	NA	NA	NA	NA	NA
WP_000043635.1|1314538_1316656_+	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
WP_000097322.1|1317041_1317392_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000282298.1|1317560_1318478_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
>prophage 7
NZ_CP029627	Staphylococcus aureus strain MOK042 chromosome, complete genome	2844513	1342075	1383805	2844513	integrase,capsid,terminase,tail,tRNA,portal,head	Staphylococcus_phage(45.95%)	55	1362191:1362207	1385168:1385184
WP_001001521.1|1342075_1343620_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_000282386.1|1343620_1343986_+	YlbF family regulator	NA	NA	NA	NA	NA
WP_000842277.1|1344012_1344504_+	energy coupling factor transporter S component ThiW	NA	NA	NA	NA	NA
WP_000073352.1|1344806_1347425_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	8.5e-41
WP_000516264.1|1347437_1349447_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.7	2.8e-60
WP_001077635.1|1349452_1349995_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_001103743.1|1350469_1351288_+	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	2.4e-26
WP_063644689.1|1351416_1352913_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_001218596.1|1353070_1354744_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_110166341.1|1354893_1355808_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001548613.1|1355825_1356761_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_000561358.1|1356775_1357009_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_000448079.1|1357230_1357707_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	37.3	7.9e-22
WP_000068617.1|1357818_1359057_+	GTPase HflX	NA	NA	NA	NA	NA
WP_110166342.1|1359075_1360314_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000624945.1|1360556_1360925_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001126603.1|1360943_1362284_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
1362191:1362207	attL	TAATCAATTTATTAATT	NA	NA	NA	NA
WP_001836882.1|1362423_1363551_-|integrase	site-specific integrase	integrase	A0A0C5AN64	Paenibacillus_phage	31.4	6.2e-33
WP_001183750.1|1363603_1364299_-	Ltp family lipoprotein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.3	3.6e-07
WP_000554410.1|1364310_1364694_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000664917.1|1364840_1365233_-	helix-turn-helix domain-containing protein	NA	A0A2I6PE55	Staphylococcus_phage	53.6	1.6e-28
WP_110166343.1|1365400_1365619_+	DUF739 family protein	NA	A0A2I6PE94	Staphylococcus_phage	62.5	4.9e-19
WP_000932238.1|1365645_1365921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000392387.1|1366185_1366356_+	hypothetical protein	NA	Q4ZDZ8	Staphylococcus_virus	89.3	2.4e-21
WP_000800341.1|1366344_1366551_-	hypothetical protein	NA	A1BTY8	Staphylococcus_virus	75.0	3.3e-25
WP_001157025.1|1366611_1367295_+	phage repressor protein	NA	A9CR56	Staphylococcus_phage	85.6	5.2e-107
WP_000072840.1|1367393_1367555_+	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
WP_000786993.1|1367641_1367959_+	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
WP_000786634.1|1367948_1368215_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.0e-18
WP_001004327.1|1368219_1368756_+	host-nuclease inhibitor Gam family protein	NA	A0A0H3U480	Staphylococcus_phage	82.5	1.7e-76
WP_000907597.1|1368756_1369536_+	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	88.0	2.3e-127
WP_000702007.1|1369562_1370111_+	hypothetical protein	NA	A7TWM8	Staphylococcus_phage	92.9	1.1e-91
WP_000929466.1|1370123_1371026_+	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	52.0	2.9e-49
WP_000946005.1|1371026_1371317_+	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	7.2e-18
WP_000714410.1|1371331_1371496_+	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	88.9	1.1e-18
WP_174190227.1|1371495_1371663_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001622384.1|1371669_1371807_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000185176.1|1371799_1372330_+	nucleotide pyrophosphohydrolase	NA	A0A1P8VVP1	Streptococcus_phage	38.2	5.2e-22
WP_025174970.1|1372471_1372579_+	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	87.5	3.2e-08
WP_000835355.1|1372575_1373040_+	hypothetical protein	NA	C9E2P0	Enterococcus_phage	43.0	3.2e-20
WP_000653930.1|1373316_1373805_+	hypothetical protein	NA	R9TMH4	Paenibacillus_phage	27.7	4.3e-07
WP_000090969.1|1373957_1374386_+	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
WP_000207537.1|1374372_1375647_+|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	76.4	1.9e-195
WP_000158568.1|1375659_1377108_+|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	69.4	7.4e-196
WP_001282612.1|1377097_1378627_+|capsid	minor capsid protein	capsid	Q4ZE35	Staphylococcus_virus	61.6	1.9e-109
WP_063644543.1|1378826_1378955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000429653.1|1378921_1379500_+	DUF4355 domain-containing protein	NA	Q4ZE34	Staphylococcus_virus	50.8	1.9e-09
WP_110166344.1|1379518_1380430_+|capsid	capsid protein	capsid	Q4ZE33	Staphylococcus_virus	59.3	3.2e-96
WP_000104116.1|1380507_1380981_+	Ig-like domain-containing protein	NA	A0A2H4J9T3	uncultured_Caudovirales_phage	31.6	9.7e-12
WP_001010139.1|1380996_1381323_+|head,tail	phage head-tail connector protein	head,tail	Q4ZE31	Staphylococcus_virus	56.4	2.1e-26
WP_001198140.1|1381628_1381979_+	HK97 gp10 family phage protein	NA	H9A0N6	Staphylococcus_phage	60.0	9.3e-36
WP_000680037.1|1381988_1382384_+	hypothetical protein	NA	H9A0N7	Staphylococcus_phage	42.3	1.9e-21
WP_000276224.1|1382395_1382995_+|tail	phage major tail protein, TP901-1 family	tail	H9A0N8	Staphylococcus_phage	47.5	7.4e-17
WP_000256347.1|1383056_1383401_+	hypothetical protein	NA	A0A1J0MFH0	Staphylococcus_phage	58.9	7.7e-35
WP_001808026.1|1383451_1383805_+	hypothetical protein	NA	Q4ZE25	Staphylococcus_virus	72.3	1.7e-37
1385168:1385184	attR	TAATCAATTTATTAATT	NA	NA	NA	NA
>prophage 8
NZ_CP029627	Staphylococcus aureus strain MOK042 chromosome, complete genome	2844513	1387000	1397610	2844513	plate,holin,tail	Staphylococcus_phage(92.31%)	13	NA	NA
WP_000350617.1|1387000_1387936_+|tail	phage tail family protein	tail	A0A1J0MF79	Staphylococcus_phage	55.9	7.8e-98
WP_000598513.1|1387944_1389630_+|tail	phage tail protein	tail	Q4ZE19	Staphylococcus_virus	46.3	8.8e-108
WP_000700622.1|1389647_1390661_+	SGNH/GDSL hydrolase family protein	NA	A0A1J0MFI8	Staphylococcus_phage	52.6	1.1e-97
WP_000013193.1|1390679_1392077_+|plate	phage baseplate upper protein	plate	A0A1J0MFK8	Staphylococcus_phage	44.7	5.8e-105
WP_000438657.1|1392089_1392479_+|holin	phage holin family protein	holin	A0A1S6L1J2	Staphylococcus_phage	38.2	5.3e-16
WP_001140242.1|1392543_1393464_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JQL2	Staphylococcus_phage	51.5	7.0e-67
WP_000889730.1|1393663_1393792_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	85.7	7.5e-12
WP_000147562.1|1393861_1393972_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	83.3	3.3e-08
WP_000006112.1|1393973_1394159_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	70.5	1.9e-16
WP_001289724.1|1394806_1395010_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	61.8	4.4e-14
WP_001814546.1|1396003_1396201_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	1.7e-10
WP_075111596.1|1396888_1397107_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	73.1	6.4e-19
WP_001002340.1|1397403_1397610_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
>prophage 9
NZ_CP029627	Staphylococcus aureus strain MOK042 chromosome, complete genome	2844513	1681131	1689461	2844513	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1681131_1681917_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924220.1|1682042_1682933_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001062187.1|1682942_1684289_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683929.1|1684402_1685503_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624586.1|1685505_1686183_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1686313_1687420_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217257.1|1687643_1689461_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	7.9e-54
>prophage 10
NZ_CP029627	Staphylococcus aureus strain MOK042 chromosome, complete genome	2844513	1757296	1766339	2844513	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1757296_1757815_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594991.1|1757836_1760110_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	5.2e-63
WP_000749795.1|1760312_1762592_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1762866_1763127_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1763145_1764285_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1764307_1765333_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_110166360.1|1765334_1766339_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 11
NZ_CP029627	Staphylococcus aureus strain MOK042 chromosome, complete genome	2844513	1891546	1955672	2844513	protease,tRNA	Staphylococcus_phage(95.56%)	62	NA	NA
WP_110166366.1|1891546_1898107_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	99.0	1.6e-309
WP_000836465.1|1898432_1898744_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001808015.1|1898765_1901183_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
WP_001025061.1|1901470_1902652_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1902761_1903715_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1903711_1904275_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1904394_1904796_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1905367_1906195_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1906197_1906317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1906428_1907430_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1907551_1908016_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1908028_1909210_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1909220_1909853_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000077358.1|1909859_1910903_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
WP_001261668.1|1911383_1912886_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1913408_1913723_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989122.1|1913722_1915015_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.3	9.4e-227
WP_001032833.1|1915101_1915956_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1916231_1916456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1916654_1917125_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1917237_1917681_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1917667_1918111_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168901.1|1918406_1919042_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1919481_1920195_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1920454_1920757_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1921012_1921378_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623478.1|1921374_1921728_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	100.0	2.6e-22
WP_000453314.1|1922110_1922944_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	100.0	5.4e-159
WP_000366166.1|1923155_1924064_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	1.3e-137
WP_000933822.1|1924188_1925382_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1925753_1927346_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_001834463.1|1927723_1928470_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672014.1|1928474_1928948_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1929013_1929271_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778525.1|1929267_1930269_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	2.2e-186
WP_000348374.1|1930273_1931752_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.4	8.1e-283
WP_072433592.1|1931910_1932366_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	97.9	5.7e-78
WP_001795535.1|1932668_1933319_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070655.1|1933399_1934395_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	98.8	6.2e-77
WP_000669027.1|1934470_1935097_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	5.3e-90
WP_000627537.1|1935137_1935479_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.0e-55
WP_000414214.1|1935579_1936152_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	96.6	1.1e-25
WP_000864143.1|1936348_1936906_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	96.2	2.7e-77
WP_000375476.1|1937278_1937455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000731418.1|1939006_1939450_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_063644710.1|1939449_1939893_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_110166367.1|1940431_1942858_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_001036003.1|1942981_1943359_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000759947.1|1943564_1944005_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000926704.1|1944049_1945663_+	lipase	NA	NA	NA	NA	NA
WP_000095395.1|1945677_1945977_+	WXG100 family type VII secretion target	NA	NA	NA	NA	NA
WP_000072589.1|1946103_1947312_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	31.5	9.3e-35
WP_000028671.1|1947304_1948861_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.3	2.6e-287
WP_001791797.1|1949024_1949159_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038690.1|1949223_1949943_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_110166368.1|1950093_1950810_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	98.7	7.0e-131
WP_011447030.1|1950911_1951019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038706.1|1950967_1951687_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.2	5.1e-129
WP_001038872.1|1951807_1952527_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
WP_001039444.1|1952584_1953307_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	100.0	6.4e-132
WP_001039433.1|1953431_1954139_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	99.6	7.7e-130
WP_001092776.1|1955102_1955672_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	62.6	2.6e-51
>prophage 12
NZ_CP029627	Staphylococcus aureus strain MOK042 chromosome, complete genome	2844513	2047579	2129215	2844513	integrase,transposase,terminase,coat,protease,tRNA	Staphylococcus_phage(58.82%)	79	2046971:2046995	2132419:2132443
2046971:2046995	attL	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
WP_000545370.1|2047579_2049007_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_000027917.1|2049019_2050477_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|2050478_2050781_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|2051147_2052686_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831705.1|2052774_2053974_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774565.1|2053986_2055990_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992921.1|2055993_2058186_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272070.1|2058182_2058875_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2059046_2059349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2059457_2060753_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827750.1|2061612_2062779_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434934.1|2062809_2063136_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669861.1|2063427_2063601_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2063581_2064184_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|2064454_2065276_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284433.1|2065268_2066738_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
WP_000897635.1|2066921_2067998_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|2068017_2068812_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2068883_2068991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323164.1|2069001_2070564_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275706.1|2070768_2071866_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.9	2.5e-47
WP_000149686.1|2072237_2072798_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2072850_2073780_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|2073974_2074148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021216.1|2074199_2075579_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|2075698_2076727_-	lactonase family protein	NA	NA	NA	NA	NA
WP_001284658.1|2077185_2077566_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_001096372.1|2077555_2079313_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_000733621.1|2079419_2080265_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	34.3	3.4e-31
WP_000612779.1|2080577_2080988_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	53.5	3.1e-30
WP_000410574.1|2082404_2082770_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000026851.1|2082778_2084842_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000706213.1|2084844_2085957_-|integrase	tyrosine-type recombinase/integrase	integrase	P97010	Streptococcus_pyogenes_phage	31.6	1.7e-11
WP_000267034.1|2087018_2087192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188074.1|2087642_2088683_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713070.1|2088739_2089582_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_000966288.1|2090195_2090720_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2090840_2091404_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2091469_2092210_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2092209_2093082_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645725.1|2093078_2093759_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991303.1|2093759_2094656_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2094652_2095033_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2095291_2095468_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2095710_2095809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068523.1|2096008_2097295_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000669702.1|2097573_2099937_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_078315435.1|2100325_2101318_+	sphingomyelin phosphodiesterase	NA	A0A1P8L6H7	Staphylococcus_phage	99.6	2.4e-161
WP_000595401.1|2101555_2102572_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	2.3e-26
WP_000791404.1|2102593_2103646_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.6	2.5e-36
WP_000206641.1|2104080_2105304_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000812008.1|2105675_2106521_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000825510.1|2106582_2107494_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045078.1|2107654_2108962_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000216894.1|2109533_2110160_-	hypothetical protein	NA	C8CH40	Staphylococcus_phage	44.5	7.0e-42
WP_000201397.1|2110156_2110336_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000921697.1|2112802_2113303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000879843.1|2113916_2114600_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001245081.1|2114800_2116270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293070.1|2116453_2117023_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	96.8	5.1e-100
WP_078063999.1|2117019_2117232_-	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	88.6	1.1e-28
WP_000771377.1|2117363_2117891_-|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	96.6	3.2e-88
WP_000448776.1|2117941_2118160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000846281.1|2118177_2118756_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	3.7e-29
WP_001190614.1|2118767_2119109_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	100.0	2.9e-58
WP_001019789.1|2119557_2120199_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	88.7	3.8e-104
WP_000356933.1|2120195_2120576_-	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	97.6	2.6e-68
WP_000447471.1|2120887_2122597_-	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	98.9	0.0e+00
WP_001002725.1|2122610_2123480_-	primase C-terminal domain-containing protein	NA	Q4ZE74	Staphylococcus_phage	95.5	5.0e-163
WP_001103965.1|2123544_2123871_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	98.1	1.8e-54
WP_000695071.1|2123871_2124255_-	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	2.2e-62
WP_001231374.1|2124256_2124460_-	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	97.0	7.5e-30
WP_000784889.1|2124444_2124600_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000481967.1|2124596_2124914_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	98.1	9.2e-51
WP_000153640.1|2124918_2125137_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	1.3e-19
WP_000620856.1|2125309_2125984_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	45.3	4.5e-39
WP_000179351.1|2125997_2127170_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	98.7	9.2e-221
WP_110166375.1|2127247_2128855_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2128930_2129215_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
2132419:2132443	attR	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
