bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.1|261385|28|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	100.00	28	0	0	1	28	377621	377648	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	377621-377648	GAATTTCGAAAAGAAATTCTACAGGCAA	0
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.1|261385|28|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	100.00	28	0	0	1	28	606342	606369	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	606342-606369	GAATTTCGAAAAGAAATTCTACAGGCAA	0
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.1|261385|28|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	100.00	28	0	0	1	28	778229	778202	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	778202-778229	TTGCCTGTAGAATTTCTTTTCGAAATTC	0
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.1|261385|28|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	100.00	28	0	0	1	28	1015972	1015945	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1015945-1015972	TTGCCTGTAGAATTTCTTTTCGAAATTC	0
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.1|261385|28|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	100.00	28	0	0	1	28	1305875	1305902	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1305875-1305902	GAATTTCGAAAAGAAATTCTACAGGCAA	0
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.1|261385|28|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	100.00	28	0	0	1	28	1380112	1380085	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1380085-1380112	TTGCCTGTAGAATTTCTTTTCGAAATTC	0
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.1|261385|28|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	100.00	28	0	0	1	28	1792663	1792690	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1792663-1792690	GAATTTCGAAAAGAAATTCTACAGGCAA	0
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.1|261385|28|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	100.00	28	0	0	1	28	1899189	1899162	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1899162-1899189	TTGCCTGTAGAATTTCTTTTCGAAATTC	0
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.1|261385|28|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	100.00	28	0	0	1	28	2258882	2258855	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	2258855-2258882	TTGCCTGTAGAATTTCTTTTCGAAATTC	0
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.1|261385|28|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	100.00	28	0	0	1	28	2616802	2616829	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	2e-07	46.0	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	2616802-2616829	GAATTTCGAAAAGAAATTCTACAGGCAA	0
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.1|261385|28|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	96.43	28	1	0	1	28	337529	337556	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	1e-06	42.8	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	337529-337556	GAATTTCGAAAAGAAATTCTACAAGCAA	1
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.1|261385|28|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	96.43	28	1	0	1	28	890320	890293	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	1e-06	42.8	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	890293-890320	TTGCTTGTAGAATTTCTTTTCGAAATTC	1
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.1|261385|28|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	92.86	28	2	0	1	28	1092333	1092360	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	1e-05	39.6	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1092333-1092360	GAATTTCAAAAAGAAATTCTACAGACAA	2
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.1|261385|28|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	92.86	28	2	0	1	28	1697657	1697684	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	1e-05	39.6	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1697657-1697684	GAATTTCGAAAAGAAATTCTACAAACAA	2
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.1|261385|28|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	92.86	28	2	0	1	28	1908539	1908512	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	1e-05	39.6	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1908512-1908539	TTGTCTGTAGAATTTCCTTTCGAAATTC	2
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.1|261385|28|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	92.86	28	2	0	1	28	1908655	1908628	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	1e-05	39.6	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	1908628-1908655	TTGTCTGTAGAATTTCCTTTCGAAATTC	2
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.1|261385|28|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	92.86	28	2	0	1	28	2269690	2269663	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	1e-05	39.6	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	2269663-2269690	TTGTCTGTAGAATTTCTTTTTGAAATTC	2
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.1|261385|28|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	92.86	28	2	0	1	28	2733603	2733576	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	1e-05	39.6	1.0	GAATTTCGAAAAGAAATTCTACAGGCAA	2733576-2733603	TTGTTTGTAGAATTTCTTTTCGAAATTC	2
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.2|261440|29|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	100.00	29	0	0	1	29	261329	261357	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	5e-08	47.5	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	261329-261357	AGCTGGCGGAAAGTCAGCTTACAATAATG	0
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.2|261440|29|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	100.00	29	0	0	1	29	787209	787181	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	5e-08	47.5	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	787181-787209	CATTATTGTAAGCTGACTTTCCGCCAGCT	0
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.2|261440|29|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	100.00	29	0	0	1	29	990061	990033	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	5e-08	47.5	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	990033-990061	CATTATTGTAAGCTGACTTTCCGCCAGCT	0
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.2|261440|29|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	100.00	29	0	0	1	29	2453330	2453302	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	5e-08	47.5	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	2453302-2453330	CATTATTGTAAGCTGACTTTCCGCCAGCT	0
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.2|261440|29|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	96.55	29	1	0	1	29	2107675	2107703	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	5e-07	44.4	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	2107675-2107703	AGCTGGCGGAAAGTCAGCTTACATTAATG	1
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.2|261440|29|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	93.10	29	2	0	1	29	337473	337501	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	337473-337501	AGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.2|261440|29|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	93.10	29	2	0	1	29	606454	606482	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	606454-606482	AGCTGGCGAAAAGACAGCTTACAATAATG	2
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.2|261440|29|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	93.10	29	2	0	1	29	1016030	1016002	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1016002-1016030	CATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.2|261440|29|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	93.10	29	2	0	1	29	1092275	1092303	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1092275-1092303	AGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.2|261440|29|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	93.10	29	2	0	1	29	1305933	1305961	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1305933-1305961	AGCTGACGAAAAGTCAGCTTACAATAATG	2
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.2|261440|29|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	93.10	29	2	0	1	29	1380170	1380142	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1380142-1380170	CATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.2|261440|29|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	93.10	29	2	0	1	29	1578248	1578220	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1578220-1578248	CATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.2|261440|29|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	93.10	29	2	0	1	29	1592723	1592695	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1592695-1592723	CATTATTGTAAGCTGTCTTTTCGCCAGCT	2
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1.2|261440|29|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	93.10	29	2	0	1	29	1897847	1897819	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	4e-06	41.2	1.0	AGCTGGCGGAAAGTCAGCTTACAATAATG	1897819-1897847	CATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	2.1|606380|28|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	96.43	28	1	0	1	28	1897808	1897781	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	1e-06	42.8	1.0	GGTGTGGGCCCCAACACAGAGAATTTCA	1897781-1897808	TGAAATTCTCTATGTTGGGGCCCACACC	1
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	4.1|1897722|26|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	100.00	26	0	0	1	26	778222	778247	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	1e-06	42.8	1.0	CGAAATTCTCTGTGTTGGGGCCCACA	778222-778247	CGAAATTCTCTGTGTTGGGGCCCACA	0
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	4.1|1897722|26|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	100.00	26	0	0	1	26	1899182	1899207	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	1e-06	42.8	1.0	CGAAATTCTCTGTGTTGGGGCCCACA	1899182-1899207	CGAAATTCTCTGTGTTGGGGCCCACA	0
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	4.1|1897722|26|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	100.00	26	0	0	1	26	2258875	2258900	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	1e-06	42.8	1.0	CGAAATTCTCTGTGTTGGGGCCCACA	2258875-2258900	CGAAATTCTCTGTGTTGGGGCCCACA	0
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	9.1|2616842|34|NZ_CP028468|CRISPRCasFinder	NZ_CP028468.1	Staphylococcus aureus strain IT1-S chromosome, complete genome	94.12	34	2	0	1	34	990020	989987	261358-261495|606350-606437|890309-890393|1897690-1897779|2020515-2020603|2152301-2152403|2232553-2232677|2489187-2489270|2616818-2616899	4e-08	49.1	1.0	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	989987-990020	ATTGGAAATCCAATTCCTCTTTGTTGGGGCCCAT	2
