assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003184985.1_ASM318498v1	NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	1	261358-261495	1	CRISPRCasFinder	no		cas3,DEDDh,RT,DinG,csa3,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGA	27	2	32	261385-261412|261385-261412|261385-261412|261385-261412|261385-261412|261385-261412|261385-261412|261385-261412|261385-261412|261385-261412|261385-261412|261385-261412|261385-261412|261385-261412|261385-261412|261385-261412|261385-261412|261385-261412|261440-261468|261440-261468|261440-261468|261440-261468|261440-261468|261440-261468|261440-261468|261440-261468|261440-261468|261440-261468|261440-261468|261440-261468|261440-261468|261440-261468	NZ_CP028468.1_377621-377648|NZ_CP028468.1_606342-606369|NZ_CP028468.1_778229-778202|NZ_CP028468.1_1015972-1015945|NZ_CP028468.1_1305875-1305902|NZ_CP028468.1_1380112-1380085|NZ_CP028468.1_1792663-1792690|NZ_CP028468.1_1899189-1899162|NZ_CP028468.1_2258882-2258855|NZ_CP028468.1_2616802-2616829|NZ_CP028468.1_337529-337556|NZ_CP028468.1_890320-890293|NZ_CP028468.1_1092333-1092360|NZ_CP028468.1_1697657-1697684|NZ_CP028468.1_1908539-1908512|NZ_CP028468.1_1908655-1908628|NZ_CP028468.1_2269690-2269663|NZ_CP028468.1_2733603-2733576|NZ_CP028468.1_261329-261357|NZ_CP028468.1_787209-787181|NZ_CP028468.1_990061-990033|NZ_CP028468.1_2453330-2453302|NZ_CP028468.1_2107675-2107703|NZ_CP028468.1_337473-337501|NZ_CP028468.1_606454-606482|NZ_CP028468.1_1016030-1016002|NZ_CP028468.1_1092275-1092303|NZ_CP028468.1_1305933-1305961|NZ_CP028468.1_1380170-1380142|NZ_CP028468.1_1578248-1578220|NZ_CP028468.1_1592723-1592695|NZ_CP028468.1_1897847-1897819	NA	2	2	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA,NA|131aa|down_5|NZ_CP028468.1_266595_266988_+	NA|574aa|up_9|NZ_CP028468.1_248749_250471_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|up_8|NZ_CP028468.1_250614_251289_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|580aa|up_7|NZ_CP028468.1_251549_253289_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|up_6|NZ_CP028468.1_253291_254032_+	PRK14084, PRK14084, DNA-binding response regulator	NA|148aa|up_5|NZ_CP028468.1_254144_254588_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|up_4|NZ_CP028468.1_254580_255282_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|764aa|up_3|NZ_CP028468.1_255622_257914_+	COG3256, NorB, Nitric oxide reductase large subunit [Inorganic ion transport and metabolism]	NA|235aa|up_2|NZ_CP028468.1_258139_258844_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|264aa|up_1|NZ_CP028468.1_258992_259784_+	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|479aa|up_0|NZ_CP028468.1_259799_261236_+	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|254aa|down_0|NZ_CP028468.1_261730_262492_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|305aa|down_1|NZ_CP028468.1_262742_263657_-	TIGR02152, Putative_ribokinase, ribokinase	NA|135aa|down_2|NZ_CP028468.1_263684_264089_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|294aa|down_3|NZ_CP028468.1_264103_264985_-	pfam06800, Sugar_transport, Sugar transport protein	NA|333aa|down_4|NZ_CP028468.1_265216_266215_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|131aa|down_5|NZ_CP028468.1_266595_266988_+	NA	NA|459aa|down_6|NZ_CP028468.1_267115_268492_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|331aa|down_7|NZ_CP028468.1_268725_269718_+	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|316aa|down_8|NZ_CP028468.1_270043_270991_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|220aa|down_9|NZ_CP028468.1_271042_271702_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
GCF_003184985.1_ASM318498v1	NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	2	606350-606437	2	CRISPRCasFinder	no		cas3,DEDDh,RT,DinG,csa3,WYL	Orphan	AAAAGAAATTCTACAGGCAATGCAAGTTGG	30	1	1	606380-606407	NZ_CP028468.1_1897808-1897781	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA|34aa|up_5|NZ_CP028468.1_600776_600878_+,NA|36aa|down_7|NZ_CP028468.1_613549_613657_+	NA|359aa|up_9|NZ_CP028468.1_597323_598400_+	TIGR01220, phosphomevalonate_kinase, phosphomevalonate kinase, ERG8-type, Gram-positive branch	NA|114aa|up_8|NZ_CP028468.1_598576_598918_+	pfam07293, DUF1450, Protein of unknown function (DUF1450)	NA|441aa|up_7|NZ_CP028468.1_598969_600292_-	PRK07251, PRK07251, FAD-containing oxidoreductase	NA|147aa|up_6|NZ_CP028468.1_600278_600719_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|34aa|up_5|NZ_CP028468.1_600776_600878_+	NA	NA|465aa|up_4|NZ_CP028468.1_601342_602737_+	pfam04740, LXG, LXG domain of WXG superfamily	NA|212aa|up_3|NZ_CP028468.1_602737_603373_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|207aa|up_2|NZ_CP028468.1_603419_604040_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|211aa|up_1|NZ_CP028468.1_604179_604812_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|313aa|up_0|NZ_CP028468.1_605259_606198_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|down_0|NZ_CP028468.1_606695_607232_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|down_1|NZ_CP028468.1_607400_607877_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|down_2|NZ_CP028468.1_607916_609212_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|down_3|NZ_CP028468.1_609239_609761_+	pfam08741, YwhD, YwhD family	NA|412aa|down_4|NZ_CP028468.1_610251_611487_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|256aa|down_5|NZ_CP028468.1_611498_612266_+	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|337aa|down_6|NZ_CP028468.1_612462_613473_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|down_7|NZ_CP028468.1_613549_613657_+	NA	NA|128aa|down_8|NZ_CP028468.1_613782_614166_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|down_9|NZ_CP028468.1_614162_615824_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed
GCF_003184985.1_ASM318498v1	NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	3	890309-890393	3	CRISPRCasFinder	no		cas3,DEDDh,RT,DinG,csa3,WYL	Orphan	TTTTCGAAATTCTCTGTGTTTGGGCCC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA,NA	NA|192aa|up_9|NZ_CP028468.1_876680_877256_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|up_8|NZ_CP028468.1_877260_877785_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_7|NZ_CP028468.1_877800_878376_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|up_6|NZ_CP028468.1_878535_882012_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|up_5|NZ_CP028468.1_882012_885666_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|up_4|NZ_CP028468.1_885829_886732_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|130aa|up_3|NZ_CP028468.1_887056_887446_+	PRK13673, PRK13673, hypothetical protein; Provisional	NA|439aa|up_2|NZ_CP028468.1_887616_888933_-	PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional	NA|275aa|up_1|NZ_CP028468.1_888984_889809_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|103aa|up_0|NZ_CP028468.1_889922_890231_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|605aa|down_0|NZ_CP028468.1_890885_892700_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|870aa|down_1|NZ_CP028468.1_892903_895513_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|290aa|down_2|NZ_CP028468.1_895571_896441_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|382aa|down_3|NZ_CP028468.1_896550_897696_+	COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]	NA|214aa|down_4|NZ_CP028468.1_897679_898321_+	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|374aa|down_5|NZ_CP028468.1_898313_899435_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|172aa|down_6|NZ_CP028468.1_899412_899928_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|145aa|down_7|NZ_CP028468.1_900238_900673_+	pfam03642, MAP, MAP domain	NA|62aa|down_8|NZ_CP028468.1_900929_901115_-	pfam11151, DUF2929, Protein of unknown function (DUF2929)	NA|314aa|down_9|NZ_CP028468.1_901409_902351_+	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3
GCF_003184985.1_ASM318498v1	NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	4	1897690-1897779	4	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,RT,DinG,csa3,WYL	Unclear	CCCCAACTTGCATTGCCTGTAGAATTTCTTTT	32	1	3	1897722-1897747|1897722-1897747|1897722-1897747	NZ_CP028468.1_778222-778247|NZ_CP028468.1_1899182-1899207|NZ_CP028468.1_2258875-2258900	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP028468.1_1891936_1892212_+,NA|129aa|up_1|NZ_CP028468.1_1896194_1896581_-,NA|138aa|down_1|NZ_CP028468.1_1899501_1899915_-,NA|37aa|down_2|NZ_CP028468.1_1899943_1900054_-,NA|31aa|down_6|NZ_CP028468.1_1903059_1903152_-	NA|419aa|up_9|NZ_CP028468.1_1889859_1891116_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP028468.1_1891118_1891319_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP028468.1_1891465_1891930_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP028468.1_1891936_1892212_+	NA	NA|406aa|up_5|NZ_CP028468.1_1892489_1893707_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP028468.1_1893819_1894449_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP028468.1_1894438_1895482_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP028468.1_1895478_1896180_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP028468.1_1896194_1896581_-	NA	NA|253aa|up_0|NZ_CP028468.1_1896797_1897556_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP028468.1_1898084_1899071_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP028468.1_1899501_1899915_-	NA	NA|37aa|down_2|NZ_CP028468.1_1899943_1900054_-	NA	NA|244aa|down_3|NZ_CP028468.1_1900139_1900871_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP028468.1_1900872_1902186_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP028468.1_1902477_1902978_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP028468.1_1903059_1903152_-	NA	DEDDh|185aa|down_7|NZ_CP028468.1_1903367_1903922_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP028468.1_1903989_1905060_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP028468.1_1905306_1905837_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_003184985.1_ASM318498v1	NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	5	2020515-2020603	5	CRISPRCasFinder	no		cas3,DEDDh,RT,DinG,csa3,WYL	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA|127aa|up_8|NZ_CP028468.1_2015565_2015946_-,NA|128aa|up_4|NZ_CP028468.1_2019231_2019615_-,NA|68aa|up_3|NZ_CP028468.1_2019616_2019820_-,NA|52aa|up_2|NZ_CP028468.1_2019804_2019960_-,NA	NA|214aa|up_9|NZ_CP028468.1_2014927_2015569_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|127aa|up_8|NZ_CP028468.1_2015565_2015946_-	NA	NA|570aa|up_7|NZ_CP028468.1_2016257_2017967_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|290aa|up_6|NZ_CP028468.1_2017980_2018850_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|106aa|up_5|NZ_CP028468.1_2018913_2019231_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|128aa|up_4|NZ_CP028468.1_2019231_2019615_-	NA	NA|68aa|up_3|NZ_CP028468.1_2019616_2019820_-	NA	NA|52aa|up_2|NZ_CP028468.1_2019804_2019960_-	NA	NA|106aa|up_1|NZ_CP028468.1_2019956_2020274_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|NZ_CP028468.1_2020278_2020497_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|NZ_CP028468.1_2020669_2021344_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|NZ_CP028468.1_2021357_2022530_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|NZ_CP028468.1_2022598_2024215_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|NZ_CP028468.1_2024290_2024575_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|NZ_CP028468.1_2024751_2025495_+	pfam02517, Abi, CAAX protease self-immunity	NA|420aa|down_5|NZ_CP028468.1_2025519_2026779_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_6|NZ_CP028468.1_2026975_2027602_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_7|NZ_CP028468.1_2027871_2028657_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|256aa|down_8|NZ_CP028468.1_2029062_2029830_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|412aa|down_9|NZ_CP028468.1_2029841_2031077_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_003184985.1_ASM318498v1	NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	6	2152301-2152403	6	CRISPRCasFinder	no	csa3	cas3,DEDDh,RT,DinG,csa3,WYL	Type I-A	AGCATCCAACTGTATTCCTCTATTTTTCAACTTTAGT	37	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP028468.1_2147133_2147364_-,NA|364aa|up_0|NZ_CP028468.1_2151153_2152245_+,NA|35aa|down_0|NZ_CP028468.1_2152759_2152864_-,NA|53aa|down_1|NZ_CP028468.1_2153540_2153699_+	NA|237aa|up_9|NZ_CP028468.1_2142743_2143454_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP028468.1_2143575_2144019_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP028468.1_2144217_2144631_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP028468.1_2145086_2146460_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP028468.1_2147133_2147364_-	NA	NA|313aa|up_4|NZ_CP028468.1_2147394_2148333_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP028468.1_2148768_2149434_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP028468.1_2149585_2149906_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP028468.1_2149907_2150888_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP028468.1_2151153_2152245_+	NA	NA|35aa|down_0|NZ_CP028468.1_2152759_2152864_-	NA	NA|53aa|down_1|NZ_CP028468.1_2153540_2153699_+	NA	NA|286aa|down_2|NZ_CP028468.1_2154357_2155215_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP028468.1_2155282_2156065_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP028468.1_2156296_2158102_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP028468.1_2158782_2160321_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP028468.1_2160355_2162488_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP028468.1_2162499_2162934_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP028468.1_2162933_2164040_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2439aa|down_9|NZ_CP028468.1_2164358_2171675_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_003184985.1_ASM318498v1	NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	7	2232553-2232677	7	CRISPRCasFinder	no		cas3,DEDDh,RT,DinG,csa3,WYL	Orphan	CCTCTTTACTCGAAAGCTCACAAAACCCTTGATATCA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA|93aa|up_7|NZ_CP028468.1_2224624_2224903_+,NA|61aa|up_1|NZ_CP028468.1_2231475_2231658_-,NA	NA|809aa|up_9|NZ_CP028468.1_2220410_2222837_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_8|NZ_CP028468.1_2222896_2223751_-	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]	NA|93aa|up_7|NZ_CP028468.1_2224624_2224903_+	NA	NA|462aa|up_6|NZ_CP028468.1_2224912_2226298_+	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|272aa|up_5|NZ_CP028468.1_2226661_2227477_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|NZ_CP028468.1_2227771_2228197_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|NZ_CP028468.1_2228575_2229280_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|NZ_CP028468.1_2229316_2230981_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|61aa|up_1|NZ_CP028468.1_2231475_2231658_-	NA	NA|60aa|up_0|NZ_CP028468.1_2232307_2232487_-	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|133aa|down_0|NZ_CP028468.1_2233075_2233474_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_1|NZ_CP028468.1_2233487_2233925_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|268aa|down_2|NZ_CP028468.1_2234164_2234968_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_3|NZ_CP028468.1_2234972_2235779_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_4|NZ_CP028468.1_2235768_2236629_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_5|NZ_CP028468.1_2236625_2237435_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|123aa|down_6|NZ_CP028468.1_2237972_2238341_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_7|NZ_CP028468.1_2238357_2239302_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|130aa|down_8|NZ_CP028468.1_2239376_2239766_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|122aa|down_9|NZ_CP028468.1_2239789_2240155_-	PRK05179, rpsM, 30S ribosomal protein S13; Validated
GCF_003184985.1_ASM318498v1	NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	8	2489187-2489270	8	CRISPRCasFinder	no		cas3,DEDDh,RT,DinG,csa3,WYL	Orphan	ACAGACAATGCAAGTTGGGGTGTGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA|250aa|up_0|NZ_CP028468.1_2488171_2488921_+,NA|122aa|down_9|NZ_CP028468.1_2499523_2499889_-	NA|451aa|up_9|NZ_CP028468.1_2478691_2480044_+	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|396aa|up_8|NZ_CP028468.1_2480105_2481293_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|259aa|up_7|NZ_CP028468.1_2481686_2482463_-	COG0390, COG0390, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|221aa|up_6|NZ_CP028468.1_2482455_2483118_-	COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|359aa|up_5|NZ_CP028468.1_2483463_2484540_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|89aa|up_4|NZ_CP028468.1_2484894_2485161_-	COG4115, COG4115, Uncharacterized protein conserved in bacteria [Function unknown]	NA|86aa|up_3|NZ_CP028468.1_2485160_2485418_-	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|152aa|up_2|NZ_CP028468.1_2485776_2486232_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|526aa|up_1|NZ_CP028468.1_2486399_2487977_-	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]	NA|250aa|up_0|NZ_CP028468.1_2488171_2488921_+	NA	NA|398aa|down_0|NZ_CP028468.1_2489386_2490580_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|250aa|down_1|NZ_CP028468.1_2490591_2491341_-	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|272aa|down_2|NZ_CP028468.1_2491333_2492149_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|down_3|NZ_CP028468.1_2492145_2493015_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|312aa|down_4|NZ_CP028468.1_2493011_2493947_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|533aa|down_5|NZ_CP028468.1_2493959_2495558_-	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein	NA|434aa|down_6|NZ_CP028468.1_2495700_2497002_-	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown]	NA|273aa|down_7|NZ_CP028468.1_2496994_2497813_-	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family	NA|274aa|down_8|NZ_CP028468.1_2497823_2498645_-	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism]	NA|122aa|down_9|NZ_CP028468.1_2499523_2499889_-	NA
GCF_003184985.1_ASM318498v1	NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	9	2616818-2616899	9	CRISPRCasFinder	no		cas3,DEDDh,RT,DinG,csa3,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	2616842-2616875	NZ_CP028468.1_990020-989987	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA|43aa|up_3|NZ_CP028468.1_2614599_2614728_-,NA|167aa|up_1|NZ_CP028468.1_2615649_2616150_+,NA	NA|256aa|up_9|NZ_CP028468.1_2605687_2606455_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|256aa|up_8|NZ_CP028468.1_2606737_2607505_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|412aa|up_7|NZ_CP028468.1_2607516_2608752_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|604aa|up_6|NZ_CP028468.1_2609018_2610830_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|234aa|up_5|NZ_CP028468.1_2612108_2612810_-	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins	NA|352aa|up_4|NZ_CP028468.1_2613417_2614473_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|43aa|up_3|NZ_CP028468.1_2614599_2614728_-	NA	NA|190aa|up_2|NZ_CP028468.1_2614882_2615452_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|167aa|up_1|NZ_CP028468.1_2615649_2616150_+	NA	NA|77aa|up_0|NZ_CP028468.1_2616369_2616600_+	COG4224, COG4224, Uncharacterized protein conserved in bacteria [Function unknown]	NA|126aa|down_0|NZ_CP028468.1_2617003_2617381_-	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only]	NA|274aa|down_1|NZ_CP028468.1_2617397_2618219_-	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs	NA|100aa|down_2|NZ_CP028468.1_2618237_2618537_-	COG4367, COG4367, Uncharacterized protein conserved in bacteria [Function unknown]	NA|186aa|down_3|NZ_CP028468.1_2618667_2619225_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|235aa|down_4|NZ_CP028468.1_2619217_2619922_+	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs	NA|337aa|down_5|NZ_CP028468.1_2620019_2621030_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|277aa|down_6|NZ_CP028468.1_2621049_2621880_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|342aa|down_7|NZ_CP028468.1_2622020_2623046_+	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases	NA|297aa|down_8|NZ_CP028468.1_2623266_2624157_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|447aa|down_9|NZ_CP028468.1_2624256_2625597_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]
