The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	2774523	710789	718610	2774523		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|710789_711845_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|711844_712531_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037805.1|712505_712979_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093556.1|713321_713762_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637680.1|714041_714626_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062973.1|714724_715438_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	42.7	9.3e-51
WP_000941336.1|715441_715861_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|715862_716531_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604513.1|716881_717475_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.4	3.7e-37
WP_110164442.1|717458_718610_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	3.5e-23
>prophage 2
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	2774523	730583	744551	2774523		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663028.1|730583_731639_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	1.8e-21
WP_000197261.1|731799_732342_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429021.1|732734_733652_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	6.2e-07
WP_031789463.1|733742_733844_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|733921_735427_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|735764_736265_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068489.1|736284_737151_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|737951_738350_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855510.1|738312_740418_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.6	0.0e+00
WP_000562498.1|740537_741509_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000876310.1|741878_742850_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_001245585.1|742836_743793_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	6.1e-05
WP_000616864.1|743789_744551_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.6	4.2e-17
>prophage 3
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	2774523	991341	999814	2774523		Synechococcus_phage(33.33%)	9	NA	NA
WP_001670307.1|991341_991824_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.0	4.0e-21
WP_001010399.1|991810_992935_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174043.1|992938_993643_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	3.6e-47
WP_000848350.1|993642_993906_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666805.1|993907_994579_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032745.1|994571_996761_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	4.6e-141
WP_052997643.1|996739_998224_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	4.2e-45
WP_000030811.1|998216_999245_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238674.1|999247_999814_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.7	5.5e-30
>prophage 4
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	2774523	1259759	1266117	2774523	transposase	Staphylococcus_phage(66.67%)	10	NA	NA
WP_001789891.1|1259759_1259957_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
WP_001789892.1|1260645_1260870_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	4.3e-18
WP_001002340.1|1261163_1261370_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
WP_001788716.1|1262070_1262181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1262608_1262794_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477492.1|1263305_1263410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001791646.1|1263364_1263538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000956747.1|1263538_1263790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001095317.1|1264102_1264870_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	44.6	6.3e-53
WP_001215400.1|1264881_1266117_-|transposase	IS21 family transposase	transposase	A0A059NT83	Lactococcus_phage	49.1	3.3e-104
>prophage 5
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	2774523	1549819	1558149	2774523	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1549819_1550605_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1550730_1551621_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062179.1|1551630_1552977_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	9.1e-55
WP_000683934.1|1553090_1554191_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624578.1|1554193_1554871_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1555001_1556108_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217257.1|1556331_1558149_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	7.9e-54
>prophage 6
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	2774523	1627483	1636526	2774523	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1627483_1628002_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595016.1|1628023_1630297_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.0	3.1e-63
WP_110164468.1|1630499_1632779_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1633053_1633314_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1633332_1634472_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001008435.1|1634494_1635520_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1635521_1636526_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 7
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	2774523	1775383	1784387	2774523		Staphylococcus_phage(100.0%)	9	NA	NA
WP_110164472.1|1775383_1776385_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	4.5e-184
WP_001008551.1|1776506_1776971_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159035.1|1776983_1778165_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
WP_000493892.1|1778175_1778808_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000384183.1|1778814_1779846_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
WP_001261679.1|1780338_1781841_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221190.1|1782367_1782682_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_000989106.1|1782681_1783974_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.2	7.5e-216
WP_000163242.1|1783991_1784387_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	96.9	4.5e-71
>prophage 8
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	2774523	1797117	1813555	2774523	transposase	Staphylococcus_phage(100.0%)	21	NA	NA
WP_000453297.1|1797117_1797951_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	6.0e-158
WP_000366153.1|1798167_1799076_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	2.9e-137
WP_000933826.1|1799200_1800394_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	2.2e-217
WP_000109899.1|1800764_1802357_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_075583752.1|1802734_1803481_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	7.8e-141
WP_000672017.1|1803485_1803959_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	3.6e-83
WP_000718108.1|1804024_1804282_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	90.6	2.0e-40
WP_000778514.1|1804278_1805280_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	2.8e-186
WP_000348357.1|1805284_1806763_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	1.6e-283
WP_012840523.1|1806921_1807377_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_078064741.1|1807678_1808329_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	92.6	4.8e-54
WP_000070659.1|1808409_1809405_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	95.2	1.9e-70
WP_000669029.1|1809480_1810107_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	91.8	6.4e-88
WP_000627536.1|1810147_1810489_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.9	2.5e-54
WP_000414208.1|1810589_1811162_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	7.8e-24
WP_000864144.1|1811358_1811928_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	95.0	1.2e-77
WP_000809864.1|1812113_1812299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1812300_1812477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070809.1|1812487_1812871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001805677.1|1813052_1813277_-|transposase	IS3 family transposase	transposase	A0A2H4PQV6	Staphylococcus_phage	86.8	6.8e-24
WP_001670380.1|1813450_1813555_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	87.5	7.2e-05
>prophage 9
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	2774523	1820525	1828206	2774523	transposase	Staphylococcus_phage(66.67%)	7	NA	NA
WP_100185108.1|1820525_1821654_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.7	5.2e-80
WP_000736712.1|1822883_1823660_-	staphylococcal enterotoxin type G	NA	NA	NA	NA	NA
WP_001236362.1|1823942_1824698_-	staphylococcal enterotoxin type N	NA	A0A075M4C7	Staphylococcus_phage	41.4	6.0e-40
WP_000764690.1|1824736_1825507_-	staphylococcal enterotoxin type C1/U	NA	A0A097PAT7	Streptococcus_pyogenes_phage	43.6	6.3e-45
WP_000713843.1|1825660_1826389_-	staphylococcal enterotoxin type I	NA	A0A1X9H080	Staphylococcus_phage	39.2	1.1e-27
WP_000821657.1|1826423_1827143_-	staphylococcal enterotoxin type M	NA	A0A1X9H080	Staphylococcus_phage	35.8	2.3e-25
WP_010922839.1|1827423_1828206_-	staphylococcal enterotoxin type O	NA	A0A1X9H080	Staphylococcus_phage	36.7	1.1e-31
>prophage 10
NZ_CP028468	Staphylococcus aureus strain IT1-S chromosome, complete genome	2774523	1909329	2024575	2774523	transposase,terminase,holin,portal,coat,protease,integrase,tRNA,tail,head,capsid	Staphylococcus_phage(82.98%)	135	1954966:1955025	2031140:2033338
WP_000545370.1|1909329_1910757_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_000027924.1|1910769_1912227_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|1912228_1912531_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_110164475.1|1912896_1914435_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831695.1|1914523_1915723_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774565.1|1915735_1917739_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992924.1|1917742_1919935_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272061.1|1919931_1920624_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|1920795_1921098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572872.1|1921206_1922502_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827757.1|1923361_1924528_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|1924558_1924885_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669863.1|1926432_1926606_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1926586_1927189_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040871.1|1927459_1928281_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	53.1	7.9e-70
WP_000284433.1|1928273_1929743_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
WP_000897635.1|1929926_1931003_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177821.1|1931022_1931817_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_052997697.1|1931888_1931996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323166.1|1932006_1933569_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275725.1|1933773_1934871_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.3	1.6e-46
WP_000149686.1|1935242_1935803_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1935855_1936785_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|1936979_1937153_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021228.1|1937204_1938584_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|1938703_1939732_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|1940001_1940403_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|1940459_1940633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188075.1|1941083_1942124_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713068.1|1942180_1943023_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033968.1|1943019_1943577_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|1943636_1944161_-	membrane protein	NA	NA	NA	NA	NA
WP_000182843.1|1944281_1944845_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221654.1|1944910_1945651_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|1945650_1946523_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645731.1|1946519_1947200_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991299.1|1947200_1948097_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	6.5e-17
WP_000691586.1|1948093_1948474_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681967.1|1948750_1948909_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|1949151_1949250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068520.1|1949449_1950736_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000669724.1|1951014_1953063_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|1954020_1954200_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|1954510_1954771_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
1954966:1955025	attL	TGTAAATGGCGGTTATAAAATGTAGGAAAATGGCGAAATGAAAATGCTGTTTTTCCTACA	NA	NA	NA	NA
WP_001215400.1|1955087_1956323_+|transposase	IS21 family transposase	transposase	A0A059NT83	Lactococcus_phage	49.1	3.3e-104
WP_001095317.1|1956334_1957102_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	44.6	6.3e-53
WP_000727643.1|1958059_1958509_+	chemotaxis-inhibiting protein CHIPS	NA	A7TWR9	Staphylococcus_phage	100.0	1.5e-78
WP_000920041.1|1959587_1960079_-	staphylokinase	NA	A7TWR8	Staphylococcus_phage	100.0	8.0e-86
WP_000861038.1|1960269_1961025_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|1961036_1961291_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_031762631.1|1961342_1961450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072357969.1|1961502_1961679_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	96.6	6.5e-22
WP_000539688.1|1961830_1962127_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|1962184_1962472_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|1962518_1962671_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582165.1|1962660_1966446_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_110164476.1|1966461_1967946_-|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	99.8	3.4e-297
WP_001805631.1|1967942_1972472_-|tail	phage tail tape measure protein	tail	A0A2I6PDK2	Staphylococcus_phage	99.9	0.0e+00
WP_001096355.1|1972716_1973067_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|1973116_1973341_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268739.1|1973382_1974027_-|tail	phage tail protein	tail	A0A2I6PDI6	Staphylococcus_phage	100.0	1.1e-119
WP_000565498.1|1974027_1974435_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114225.1|1974431_1974836_-	hypothetical protein	NA	A0A2I6PDJ6	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|1974832_1975195_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|1975178_1975463_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|1975452_1975737_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154555.1|1975756_1976902_-|capsid	phage major capsid protein	capsid	A0A1X9H072	Staphylococcus_phage	100.0	5.6e-215
WP_000642728.1|1976925_1977663_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|1977646_1978834_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|1978849_1980511_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|1980507_1980852_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|1980982_1981282_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|1981513_1981930_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_001794311.1|1981957_1982158_-	DUF1514 family protein	NA	D2JLD9	Staphylococcus_phage	100.0	1.4e-28
WP_061385150.1|1982157_1982808_-	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	99.5	2.0e-116
WP_000595265.1|1982966_1983116_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_061385151.1|1983112_1983499_-	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	98.4	2.0e-63
WP_061385152.1|1983495_1983702_-	DUF1381 domain-containing protein	NA	A0A2I6PDB6	Staphylococcus_phage	95.6	1.9e-28
WP_061385153.1|1983738_1984272_-	dUTP pyrophosphatase	NA	A0A059T5A7	Staphylococcus_phage	99.4	3.5e-95
WP_061385154.1|1984264_1984513_-	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	97.6	2.0e-37
WP_000131381.1|1984527_1984770_-	hypothetical protein	NA	A0A1P8L6E3	Staphylococcus_phage	100.0	3.0e-41
WP_000101270.1|1984773_1985142_-	hypothetical protein	NA	A0A0E3XD52	Staphylococcus_phage	100.0	6.7e-53
WP_000401964.1|1985154_1985559_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
WP_000338530.1|1985567_1985786_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_031833239.1|1985792_1986677_-	DnaD domain protein	NA	A0A1W6JPN9	Staphylococcus_phage	100.0	1.7e-139
WP_000934764.1|1986706_1987177_-	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	100.0	7.4e-81
WP_078158007.1|1987177_1987795_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	99.4	4.5e-86
WP_000138475.1|1987875_1988796_-	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_061736933.1|1988797_1990741_-	AAA family ATPase	NA	A0A0E3T8H3	Staphylococcus_phage	98.9	0.0e+00
WP_001205732.1|1990749_1991013_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291503.1|1991021_1991282_-	DUF1108 family protein	NA	A0EWW8	Staphylococcus_phage	100.0	8.9e-44
WP_000165375.1|1991262_1991589_-	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	100.0	1.2e-53
WP_000066017.1|1991683_1991845_-	DUF1270 domain-containing protein	NA	D2JGJ6	Staphylococcus_phage	100.0	4.3e-20
WP_001120197.1|1991841_1992162_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000275058.1|1992220_1992853_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_000939496.1|1992867_1993008_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_001148861.1|1993038_1993236_-	hypothetical protein	NA	A0A1W6JPV3	Staphylococcus_phage	100.0	1.2e-24
WP_001148337.1|1993251_1994001_-	antirepressor	NA	Q8SDM9	Staphylococcus_phage	99.6	4.4e-136
WP_061385157.1|1994057_1994597_+	hypothetical protein	NA	A7TW92	Staphylococcus_phage	99.4	2.2e-97
WP_000435341.1|1994620_1994881_-	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000213811.1|1994928_1995141_-	helix-turn-helix transcriptional regulator	NA	A7TWF1	Staphylococcus_phage	100.0	1.6e-30
WP_001566740.1|1995292_1996024_+	helix-turn-helix transcriptional regulator	NA	A0A075LYE4	Staphylococcus_phage	75.8	9.8e-88
WP_001089804.1|1996177_1996363_+	hypothetical protein	NA	A0A2I6PDS4	Staphylococcus_phage	100.0	2.3e-25
WP_000705238.1|1996562_1996730_+	hypothetical protein	NA	Q4ZDJ4	Staphylococcus_virus	100.0	1.7e-24
WP_017804779.1|1996869_1997574_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	99.6	6.7e-126
WP_000857200.1|1997766_1998804_+|integrase	site-specific integrase	integrase	Q38086	Staphylococcus_phage	99.7	2.2e-178
WP_000595402.1|1999922_2000939_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	3.9e-26
WP_000791416.1|2000960_2002013_-	bi-component leukocidin LukGH subunit H	NA	A0A2I6PDF3	Staphylococcus_phage	32.1	1.3e-35
WP_000206641.1|2002447_2003671_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_110164477.1|2004095_2004887_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000825510.1|2004948_2005860_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045063.1|2006020_2007328_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_001239269.1|2008441_2009377_+	TDT family transporter	NA	NA	NA	NA	NA
WP_000812237.1|2010231_2010459_-	hypothetical protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	47.4	1.9e-13
WP_001035597.1|2010877_2011582_+	toxic shock syndrome toxin TSST-1	NA	NA	NA	NA	NA
WP_001293073.1|2011736_2012306_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	3.5e-101
WP_000358778.1|2012302_2012644_-	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
WP_052997658.1|2012646_2013174_-|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	96.6	2.3e-86
WP_000448775.1|2013224_2013443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000846285.1|2013460_2014039_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_001190608.1|2014050_2014392_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	98.2	7.1e-57
WP_001019766.1|2014927_2015569_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	94.8	3.5e-113
WP_000356937.1|2015565_2015946_-	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	100.0	6.9e-69
WP_000447451.1|2016257_2017967_-	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	100.0	0.0e+00
WP_001002721.1|2017980_2018850_-	hypothetical protein	NA	Q4ZE74	Staphylococcus_phage	99.3	6.0e-169
WP_001103930.1|2018913_2019231_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	58.2	1.6e-18
WP_000403839.1|2019231_2019615_-	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	9.7e-63
WP_001231378.1|2019616_2019820_-	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	97.0	7.5e-30
WP_000708433.1|2019804_2019960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000481967.1|2019956_2020274_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	98.1	9.2e-51
WP_000153640.1|2020278_2020497_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	1.3e-19
WP_000620857.1|2020669_2021344_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	45.8	1.6e-39
WP_000179345.1|2021357_2022530_+|integrase	site-specific integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	98.2	3.5e-220
WP_000240649.1|2022598_2024215_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	5.8e-157
WP_000917289.1|2024290_2024575_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
2031140:2033338	attR	TGTAGGAAAAACAGCATTTTCATTTCGCCATTTTCCTACATTTTATAACCGCCATTTACAATTAATTATGAAAAAAATTTTATTTATCAAATAATGATAAATCGATGTTGTTTACGATAGCTTACATGCTAGAAATAATTATCTGTAATGATAATTAAGAAAAATACATAGCACTGAGTCCAAGGAAACTAACTCTACTAGCAAATGTTACTCACTTGCTAATTTTACATGGTTATTAAGTTGGGATGGCTTAATAACTCATACTTTTAGTACTATACGAAGATAACAAATTTACAATGAAAGTAATTAATTATTCATCTTATTTTTTAGTGAATTTGTTCACTGTGTCGATAATCCATTTTACTAAGTCACCGATTGTTGAAATGATATCTTGTGCCATTGAAATCACTCCTTCCTTAATTAAGATAAAAATTCTTAAAATTAAACAACTCATCAACTATTTTCCATCACATCTCTGTGATCTAGTTATATTAAAACATGCTAAAAGCATTTATTTTCCAATTTTTCTTAACTAGTCGTTTTTTATTCTTAACTGTAAATTTTTTTATGTTAAAATATTAAATACAAATTACATTTAACAGTTAAGTATTTATTTACTACAGTTAGGCAATATAATGATAAAAGATTGTACTAAATCGTATAATGACAGTGAGGAGAGTGGTGTAAAATTGAATTATTTTGATAACAAAATTGACCAGTTTGCCACGTATCTTCAAAAGAGAAATAACTTAGATCATATTCAATTTTTGCAAGTACGATTAGGGATGCAGGTCTTAGCTAAAAATATAGGTAAATTAATTGTTATGTATACTCTTGCCTATATTTTAAACATTTTTCTGTTTACGTTAATTACGAATTTAACATTTTACTTAATAAGAAGACATGCACATGGTGCACATGCACCTTCTTCCTTTTGGTGTTATGTGGAAAGTATTTTATTATTTATACTCTTACCTTTAGTAATAGTAAATTTTCATATTAATCCATTAATTATGATTATTTTAACAGTTATTTCTTTAGGTATAATCTCAGTATATGCTCCTGCAGCAACTAAAAAGAAGCCCATTCCTGTGCGACTTATTAAACGAAAAAAATATTATGCGATTATTGTTAGTTTAACCTTTTTCATTATCACACTTATCATCAAAGAGCCATTTGCCCAATTCATTCAATTAGGCATCATAATAGAAGCTATTACATTATTACCTATTTTCTTTATTAAGGAGGACTTAAAATGAATACATTATTTAACTTATTTTTTGATTTTATTACTGGGATTTTAAAAAACATTGGTAACATCGCAGCTTATAGTACTTGTGACTTCATAATGGATGAAGTTGAAGTACCTAAAGAATTAACTCAATTACACGAATAATAAAAATAGAAAGTGTGATAGTAGGTGGAATTATTAAATAGTTATAATTTTGTTTTATTCGTATTAACTCAAATGATATTAATGTTTACAATACCAGCTATAATTAGTGGTATTAAGTACAGTAAACTTGATTATTTTTTCATCATAGTAATTTCGACATTATCGTTATTTCTATTTAAAATGTTTGATAGCGCGTCCTTAATCATATTAACTTCATTTATTATTATAATGTATTTTGTCAAAATCAAATGGTATTCTATTTTGTTGATTATGACTTCGCAGATTATTCTGTACTGTGCTAACTACATGTATATAGTTATATATGCATATATCACCAAAATTTCTGATAGTATATTTGTAATATTCCCTAGCTTTTTTGTAGTTTATGTGACTATTAGTATACTATTCTCATATATAATAAATAGAGTTCTCAAAAAAATTAGCACACCATATCTAATACTAAACAAAGGATTTTTAATAGTTATTTCGACTATCTTACTGCTTACTTTTTCATTATTTTTCTTTTATTCACAAATAAACTCGGATGAAGCTAAAGTAATAAGGCAGTATTCTTTTATTTTTATTGGTATCACTATATTTTTAAGTATATTAACATTTGTTATTTCTCAATTTCTCCTTAAAGAGATGAAATATAAACGTAATCAAGAAGAAATTGAAACCTATTATGAATATACATTGAAGATTGAAGCTATCAACAACGAAATGCGCAAGTTCCGTCACGATTATGTCAATATCTTAACAACGCTTTCAGAATTCATTCGAGAAGATGACATGCCTGGCCT	NA	NA	NA	NA
>prophage 1
NZ_CP028469	Staphylococcus aureus strain IT1-S plasmid pIT1-S, complete sequence	34104	15704	24615	34104	transposase	Staphylococcus_phage(57.14%)	9	NA	NA
WP_110164495.1|15704_17351_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.2	5.0e-289
WP_000378396.1|17713_19894_-	cadmium-translocating P-type ATPase CadA	NA	E4ZFI9	Streptococcus_phage	63.7	9.3e-251
WP_000159128.1|19886_20252_-	winged helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	47.8	8.5e-24
WP_000361064.1|20489_20867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001670420.1|20961_21636_+|transposase	IS6-like element ISSau6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	87.9	4.8e-113
WP_001035802.1|21670_21883_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000120605.1|22598_22913_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	4.7e-39
WP_000153630.1|22912_24202_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	81.4	6.6e-188
WP_000358995.1|24219_24615_+	thioredoxin-dependent arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
