assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003184245.1_ASM318424v1	NZ_CP025437	Bacillus coagulans strain LA204 chromosome, complete genome	1	113505-113595	1	CRISPRCasFinder	no		RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	CCCGTCTTTTGCTGGAACAAGCATA	25	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA	NA|439aa|up_9|NZ_CP025437.1_101080_102397_+	TIGR03604, hypothetical_protein, thiazole/oxazole-forming peptide maturase, SagD family component	NA|145aa|up_8|NZ_CP025437.1_102551_102986_+	pfam02517, Abi, CAAX protease self-immunity	NA|154aa|up_7|NZ_CP025437.1_104383_104845_+	COG4463, CtsR, Transcriptional repressor of class III stress genes [Transcription]	NA|182aa|up_6|NZ_CP025437.1_104864_105410_+	COG3880, COG3880, Modulator of heat shock repressor CtsR, McsA [Signal transduction    mechanisms]	NA|356aa|up_5|NZ_CP025437.1_105409_106477_+	PRK01059, PRK01059, ATP:guanido phosphotransferase; Provisional	NA|817aa|up_4|NZ_CP025437.1_106493_108944_+	CHL00095, clpC, Clp protease ATP binding subunit	NA|457aa|up_3|NZ_CP025437.1_109176_110547_+	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|362aa|up_2|NZ_CP025437.1_110893_111979_+	COG4956, COG4956, Integral membrane protein (PIN domain superfamily) [General function prediction only]	NA|227aa|up_1|NZ_CP025437.1_112045_112726_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|159aa|up_0|NZ_CP025437.1_112728_113205_+	pfam02542, YgbB, YgbB family	NA|487aa|down_0|NZ_CP025437.1_113757_115218_+	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|223aa|down_1|NZ_CP025437.1_115620_116289_+	COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]	NA|466aa|down_2|NZ_CP025437.1_116269_117667_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|138aa|down_3|NZ_CP025437.1_117663_118077_+	COG1939, COG1939, Ribonuclease III family protein [Replication, recombination, and    repair]	NA|248aa|down_4|NZ_CP025437.1_118076_118820_+	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3	NA|170aa|down_5|NZ_CP025437.1_118821_119331_+	COG3688, COG3688, Predicted RNA-binding protein containing a PIN domain [General function prediction only]	NA|217aa|down_6|NZ_CP025437.1_119397_120048_+	PRK08295, PRK08295, RNA polymerase sporulation sigma factor SigH	NA|49aa|down_7|NZ_CP025437.1_120357_120504_+	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|62aa|down_8|NZ_CP025437.1_120539_120725_+	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|178aa|down_9|NZ_CP025437.1_120874_121408_+	PRK05609, nusG, transcription antitermination protein NusG; Validated
GCF_003184245.1_ASM318424v1	NZ_CP025437	Bacillus coagulans strain LA204 chromosome, complete genome	2	345204-345796	1	CRT	no		RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	TTCAAAAAGACAAAANGG	18	0	0	NA	NA	NA	11	11	Orphan	RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	NA|71aa|up_3|NZ_CP025437.1_341292_341505_+,NA	NA|196aa|up_9|NZ_CP025437.1_333589_334177_+	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|240aa|up_8|NZ_CP025437.1_334575_335295_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|340aa|up_7|NZ_CP025437.1_335493_336513_+	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|415aa|up_6|NZ_CP025437.1_336699_337944_+	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2	NA|258aa|up_5|NZ_CP025437.1_337921_338695_+	PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional	NA|188aa|up_4|NZ_CP025437.1_340463_341027_+	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain	NA|71aa|up_3|NZ_CP025437.1_341292_341505_+	NA	NA|135aa|up_2|NZ_CP025437.1_341753_342158_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|353aa|up_1|NZ_CP025437.1_342200_343259_+	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins	NA|473aa|up_0|NZ_CP025437.1_343642_345061_+	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|468aa|down_0|NZ_CP025437.1_346361_347765_-	pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein	NA|102aa|down_1|NZ_CP025437.1_347934_348240_+	TIGR04104, hypothetical_protein, cxxc_20_cxxc protein	NA|242aa|down_2|NZ_CP025437.1_348761_349487_+	TIGR00434, Phosphoadenosine_phosphosulfate_reductase, phosophoadenylyl-sulfate reductase (thioredoxin)	NA|253aa|down_3|NZ_CP025437.1_349887_350646_+	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT)	NA|247aa|down_4|NZ_CP025437.1_350652_351393_+	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|209aa|down_5|NZ_CP025437.1_351679_352306_+	PRK06718, PRK06718, NAD(P)-binding protein	NA|177aa|down_6|NZ_CP025437.1_352438_352969_+	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens  ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS)	NA|368aa|down_7|NZ_CP025437.1_354577_355681_-	PRK09423, gldA, glycerol dehydrogenase; Provisional	NA|531aa|down_8|NZ_CP025437.1_355913_357506_+	PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated	NA|347aa|down_9|NZ_CP025437.1_358153_359194_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain
GCF_003184245.1_ASM318424v1	NZ_CP025437	Bacillus coagulans strain LA204 chromosome, complete genome	3	455647-455991	2	CRT	no		RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	TTTGTCCTTTTGACAGGTTCAAAAGGACATTTC	33	2	2	455732-455750|455940-455958	NZ_CP025437.1_86273-86291|NZ_CP025437.1_1967950-1967932	NA	6	6	Orphan	RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	NA|158aa|up_3|NZ_CP025437.1_450840_451314_+,NA|235aa|up_2|NZ_CP025437.1_451262_451967_-,NA	NA|543aa|up_9|NZ_CP025437.1_442025_443654_+	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|423aa|up_8|NZ_CP025437.1_443924_445193_+	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed	NA|227aa|up_7|NZ_CP025437.1_445498_446179_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|235aa|up_6|NZ_CP025437.1_447105_447810_-	TIGR03652, FeS_repair_RIC, iron-sulfur cluster repair di-iron protein	NA|179aa|up_5|NZ_CP025437.1_448162_448699_-	COG2353, COG2353, Uncharacterized conserved protein [Function unknown]	NA|373aa|up_4|NZ_CP025437.1_449578_450697_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|158aa|up_3|NZ_CP025437.1_450840_451314_+	NA	NA|235aa|up_2|NZ_CP025437.1_451262_451967_-	NA	NA|341aa|up_1|NZ_CP025437.1_452515_453538_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|461aa|up_0|NZ_CP025437.1_454045_455428_+	PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional	NA|607aa|down_0|NZ_CP025437.1_456610_458431_+	pfam13520, AA_permease_2, Amino acid permease	NA|279aa|down_1|NZ_CP025437.1_458595_459432_-	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|62aa|down_2|NZ_CP025437.1_459606_459792_+	PRK14861, tatA, twin arginine translocase protein A; Provisional	NA|472aa|down_3|NZ_CP025437.1_460433_461849_+	pfam06782, UPF0236, Uncharacterized protein family (UPF0236)	NA|342aa|down_4|NZ_CP025437.1_462245_463271_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|243aa|down_5|NZ_CP025437.1_463611_464340_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|272aa|down_6|NZ_CP025437.1_464904_465720_+	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold	NA|218aa|down_7|NZ_CP025437.1_465785_466439_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|236aa|down_8|NZ_CP025437.1_466464_467172_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|134aa|down_9|NZ_CP025437.1_467346_467748_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]
GCF_003184245.1_ASM318424v1	NZ_CP025437	Bacillus coagulans strain LA204 chromosome, complete genome	4	629034-629125	2	CRISPRCasFinder	no	RT	RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	Unclear	TTCCTTTTCTGGTGTGGGCCGTT	23	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	NA|98aa|up_4|NZ_CP025437.1_623557_623851_-,NA	NA|187aa|up_9|NZ_CP025437.1_617818_618379_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|346aa|up_8|NZ_CP025437.1_618652_619690_-	PRK07109, PRK07109, short chain dehydrogenase; Provisional	NA|465aa|up_7|NZ_CP025437.1_619836_621231_-	pfam13546, DDE_5, DDE superfamily endonuclease	NA|343aa|up_6|NZ_CP025437.1_621402_622431_+	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|190aa|up_5|NZ_CP025437.1_622487_623057_+	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	NA|98aa|up_4|NZ_CP025437.1_623557_623851_-	NA	NA|191aa|up_3|NZ_CP025437.1_624001_624574_-	cd02219, cupin_YjlB-like, Bacillus subtilis YjlB and related proteins, cupin domain	NA|272aa|up_2|NZ_CP025437.1_624877_625693_+	pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family	NA|239aa|up_1|NZ_CP025437.1_626316_627033_+	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	RT|470aa|up_0|NZ_CP025437.1_627473_628883_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|526aa|down_0|NZ_CP025437.1_630903_632481_+	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|325aa|down_1|NZ_CP025437.1_632425_633400_+	COG5464, COG5464, Uncharacterized conserved protein [Function unknown]	NA|361aa|down_2|NZ_CP025437.1_633895_634978_-	cd08172, GlyDH-like, Glycerol_dehydrogenase-like	NA|460aa|down_3|NZ_CP025437.1_635265_636645_-	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily	NA|512aa|down_4|NZ_CP025437.1_636634_638170_-	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases	NA|445aa|down_5|NZ_CP025437.1_638229_639564_-	PRK05474, PRK05474, xylose isomerase; Provisional	NA|391aa|down_6|NZ_CP025437.1_639772_640945_+	pfam00480, ROK, ROK family	NA|366aa|down_7|NZ_CP025437.1_641092_642190_-	PRK09375, PRK09375, quinolinate synthase NadA	NA|284aa|down_8|NZ_CP025437.1_642186_643038_-	PRK08072, PRK08072, carboxylating nicotinate-nucleotide diphosphorylase	NA|531aa|down_9|NZ_CP025437.1_643006_644599_-	PRK08071, PRK08071, L-aspartate oxidase; Provisional
GCF_003184245.1_ASM318424v1	NZ_CP025437	Bacillus coagulans strain LA204 chromosome, complete genome	5	805687-805778	3	CRISPRCasFinder	no	DinG	RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	Type IV-A	GTTCTAGCCCTTGCAAAACCTTTGG	25	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	NA|69aa|up_0|NZ_CP025437.1_805330_805537_+,NA|199aa|down_0|NZ_CP025437.1_805933_806530_-	NA|248aa|up_9|NZ_CP025437.1_794341_795085_+	PRK12896, PRK12896, methionine aminopeptidase; Reviewed	NA|194aa|up_8|NZ_CP025437.1_795306_795888_-	pfam02632, BioY, BioY family	NA|129aa|up_7|NZ_CP025437.1_796953_797340_+	cd04776, HTH_GnyR, Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR	NA|508aa|up_6|NZ_CP025437.1_797336_798860_+	PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated	NA|553aa|up_5|NZ_CP025437.1_798843_800502_+	cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product	NA|300aa|up_4|NZ_CP025437.1_800589_801489_+	PRK06701, PRK06701, short chain dehydrogenase; Provisional	NA|276aa|up_3|NZ_CP025437.1_801935_802763_-	pfam02522, Antibiotic_NAT, Aminoglycoside 3-N-acetyltransferase	NA|443aa|up_2|NZ_CP025437.1_802869_804198_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|142aa|up_1|NZ_CP025437.1_804704_805130_-	pfam00582, Usp, Universal stress protein family	NA|69aa|up_0|NZ_CP025437.1_805330_805537_+	NA	NA|199aa|down_0|NZ_CP025437.1_805933_806530_-	NA	NA|384aa|down_1|NZ_CP025437.1_806680_807832_-	TIGR04478, radical_SAM_superfamily_domain_protein, radical SAM/CxCxxxxC motif protein YfkAB	NA|840aa|down_2|NZ_CP025437.1_808132_810652_-	sd00006, TPR, Tetratricopeptide repeat	NA|354aa|down_3|NZ_CP025437.1_810876_811938_+	cd05285, sorbitol_DH, Sorbitol dehydrogenase	NA|320aa|down_4|NZ_CP025437.1_813966_814926_+	cd06286, PBP1_CcpB-like, ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species	NA|181aa|down_5|NZ_CP025437.1_815058_815601_+	cd05005, SIS_PHI, Hexulose-6-phosphate isomerase (PHI)	NA|260aa|down_6|NZ_CP025437.1_815629_816409_+	cd07517, HAD_HPP, phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate phosphatase; belongs to the haloacid dehalogenase-like superfamily	NA|62aa|down_7|NZ_CP025437.1_816717_816903_-	pfam13076, Fur_reg_FbpA, Fur-regulated basic protein A	NA|255aa|down_8|NZ_CP025437.1_816945_817710_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|701aa|down_9|NZ_CP025437.1_817895_819998_-	PRK06922, PRK06922, class I SAM-dependent methyltransferase
GCF_003184245.1_ASM318424v1	NZ_CP025437	Bacillus coagulans strain LA204 chromosome, complete genome	6	987439-987517	4	CRISPRCasFinder	no		RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	TGAAAGACATTTTATAGGGTGGCTGCC	27	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA	NA|1199aa|up_9|NZ_CP025437.1_973517_977114_-	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|382aa|up_8|NZ_CP025437.1_977413_978559_+	COG3595, COG3595, Uncharacterized conserved protein [Function unknown]	NA|117aa|up_7|NZ_CP025437.1_978677_979028_+	COG1950, COG1950, Predicted membrane protein [Function unknown]	NA|437aa|up_6|NZ_CP025437.1_979522_980833_+	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|318aa|up_5|NZ_CP025437.1_981147_982101_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|272aa|up_4|NZ_CP025437.1_982164_982980_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|218aa|up_3|NZ_CP025437.1_983075_983729_+	PRK13288, PRK13288, pyrophosphatase PpaX; Provisional	NA|172aa|up_2|NZ_CP025437.1_983725_984241_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|504aa|up_1|NZ_CP025437.1_984340_985852_+	sd00006, TPR, Tetratricopeptide repeat	NA|316aa|up_0|NZ_CP025437.1_986034_986982_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|153aa|down_0|NZ_CP025437.1_987820_988279_+	cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily	NA|297aa|down_1|NZ_CP025437.1_988315_989206_+	PRK05416, PRK05416, RNase adapter RapZ	NA|327aa|down_2|NZ_CP025437.1_989202_990183_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|318aa|down_3|NZ_CP025437.1_990263_991217_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|90aa|down_4|NZ_CP025437.1_991327_991597_+	PRK13782, PRK13782, HPr family phosphocarrier protein	NA|195aa|down_5|NZ_CP025437.1_991683_992268_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|309aa|down_6|NZ_CP025437.1_992925_993852_+	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|100aa|down_7|NZ_CP025437.1_993848_994148_+	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|463aa|down_8|NZ_CP025437.1_994618_996007_+	PRK00485, fumC, fumarate hydratase; Reviewed	NA|69aa|down_9|NZ_CP025437.1_996062_996269_-	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type
GCF_003184245.1_ASM318424v1	NZ_CP025437	Bacillus coagulans strain LA204 chromosome, complete genome	7	1174787-1174925	5	CRISPRCasFinder	no	RT	RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	Unclear	GGAACGGCACAGCAAACGACAATCCGGGGAA	31	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	NA|56aa|up_4|NZ_CP025437.1_1167339_1167507_+,NA|124aa|down_0|NZ_CP025437.1_1176203_1176575_+	NA|452aa|up_9|NZ_CP025437.1_1161721_1163077_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|529aa|up_8|NZ_CP025437.1_1163073_1164660_+	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|395aa|up_7|NZ_CP025437.1_1164723_1165908_+	PRK08310, PRK08310, amidase; Provisional	NA|144aa|up_6|NZ_CP025437.1_1166317_1166749_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|130aa|up_5|NZ_CP025437.1_1166749_1167139_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|56aa|up_4|NZ_CP025437.1_1167339_1167507_+	NA	NA|293aa|up_3|NZ_CP025437.1_1168216_1169095_-	pfam10114, PocR, Sensory domain found in PocR	NA|408aa|up_2|NZ_CP025437.1_1169419_1170643_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|370aa|up_1|NZ_CP025437.1_1170729_1171839_-	PRK06520, PRK06520, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	NA|99aa|up_0|NZ_CP025437.1_1172066_1172363_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|124aa|down_0|NZ_CP025437.1_1176203_1176575_+	NA	RT|470aa|down_1|NZ_CP025437.1_1177019_1178429_+	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|241aa|down_2|NZ_CP025437.1_1178725_1179448_-	pfam01863, DUF45, Protein of unknown function DUF45	NA|1036aa|down_3|NZ_CP025437.1_1179461_1182569_-	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|426aa|down_4|NZ_CP025437.1_1182612_1183890_-	cd17515, RMtype1_S_MjaORF132P_Sau1132ORF3780P-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to MjaXIP/S	NA|510aa|down_5|NZ_CP025437.1_1183898_1185428_-	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|198aa|down_6|NZ_CP025437.1_1185427_1186021_-	cd17517, RMtype1_S_EcoKI_StySPI-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR),similar to Escherichia coli str	NA|438aa|down_7|NZ_CP025437.1_1186936_1188250_+	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1	NA|326aa|down_8|NZ_CP025437.1_1188831_1189809_+	cd06294, PBP1_MalR-like, ligand-binding domain of maltose transcription regulator MalR which is a member of the LacI-GalR family repressors	NA|469aa|down_9|NZ_CP025437.1_1190322_1191729_+	cd17313, MFS_SLC45_SUC, Solute carrier family 45 and similar sugar transporters of the Major Facilitator Superfamily of transporters
GCF_003184245.1_ASM318424v1	NZ_CP025437	Bacillus coagulans strain LA204 chromosome, complete genome	8	1336610-1337059	3,6	CRT,CRISPRCasFinder	no		RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	AANTGTCNTTTTGNAGCNGNCAAAAGGACAAAA,TTTTGAAGCTGTCAAAAGGACAAAA	33,25	6	18	1336643-1336661|1336643-1336661|1336643-1336661|1336643-1336661|1336695-1336713|1336695-1336713|1336695-1336713|1336695-1336713|1336799-1336817|1336799-1336817|1336799-1336817|1336799-1336817|1336643-1336669|1336643-1336669|1336695-1336721|1336695-1336721|1336799-1336825|1336799-1336825	NZ_CP025437.1_86238-86220|NZ_CP025437.1_1335022-1335040|NZ_CP025437.1_1335074-1335092|NZ_CP025437.1_86498-86480|NZ_CP025437.1_86446-86428|NZ_CP025437.1_86758-86740|NZ_CP025437.1_1116232-1116214|NZ_CP025437.1_2622431-2622413|NZ_CP025437.1_86238-86220|NZ_CP025437.1_1335022-1335040|NZ_CP025437.1_1335074-1335092|NZ_CP025437.1_86498-86480|NZ_CP025437.1_1335074-1335100|NZ_CP025437.1_86238-86212|NZ_CP025437.1_86446-86420|NZ_CP025437.1_2622431-2622405|NZ_CP025437.1_1335074-1335100|NZ_CP025437.1_86238-86212	NA:NA	8,8	8	Orphan	RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|370aa|down_1|NZ_CP025437.1_1338099_1339209_+	NA|181aa|up_9|NZ_CP025437.1_1324146_1324689_+	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA|300aa|up_8|NZ_CP025437.1_1324919_1325819_+	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|429aa|up_7|NZ_CP025437.1_1325878_1327165_+	PRK09357, pyrC, dihydroorotase; Validated	NA|366aa|up_6|NZ_CP025437.1_1327161_1328259_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1067aa|up_5|NZ_CP025437.1_1328242_1331443_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|259aa|up_4|NZ_CP025437.1_1331439_1332216_+	cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase	NA|330aa|up_3|NZ_CP025437.1_1332413_1333403_+	PRK07259, PRK07259, dihydroorotate dehydrogenase	NA|236aa|up_2|NZ_CP025437.1_1333395_1334103_+	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase	NA|212aa|up_1|NZ_CP025437.1_1334102_1334738_+	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|392aa|up_0|NZ_CP025437.1_1335312_1336488_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|302aa|down_0|NZ_CP025437.1_1337105_1338011_-	pfam08378, NERD, Nuclease-related domain	NA|370aa|down_1|NZ_CP025437.1_1338099_1339209_+	NA	NA|287aa|down_2|NZ_CP025437.1_1339392_1340253_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|487aa|down_3|NZ_CP025437.1_1340462_1341923_+	cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|279aa|down_4|NZ_CP025437.1_1343222_1344059_+	TIGR02624, Rhamnulose-1-phosphate_aldolase, rhamnulose-1-phosphate aldolase	NA|68aa|down_5|NZ_CP025437.1_1344062_1344266_+	PRK10624, PRK10624, L-1,2-propanediol oxidoreductase; Provisional	NA|141aa|down_6|NZ_CP025437.1_1344368_1344791_+	PRK05234, mgsA, methylglyoxal synthase; Validated	NA|192aa|down_7|NZ_CP025437.1_1344954_1345530_+	TIGR02727, Uncharacterized_protein_YqgN, 5,10-methenyltetrahydrofolate synthetase	NA|447aa|down_8|NZ_CP025437.1_1345526_1346867_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|505aa|down_9|NZ_CP025437.1_1347039_1348554_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCF_003184245.1_ASM318424v1	NZ_CP025437	Bacillus coagulans strain LA204 chromosome, complete genome	9	2406690-2406770	7	CRISPRCasFinder	no		RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	CTTTGCGAGATCCAATTCGCAAATGG	26	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA|83aa|down_4|NZ_CP025437.1_2411286_2411535_+,NA|43aa|down_7|NZ_CP025437.1_2412501_2412630_+	NA|365aa|up_9|NZ_CP025437.1_2393853_2394948_-	pfam10776, DUF2600, Protein of unknown function (DUF2600)	NA|269aa|up_8|NZ_CP025437.1_2394958_2395765_-	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|172aa|up_7|NZ_CP025437.1_2395923_2396439_+	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|633aa|up_6|NZ_CP025437.1_2396809_2398708_-	COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]	NA|404aa|up_5|NZ_CP025437.1_2398938_2400150_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|530aa|up_4|NZ_CP025437.1_2400614_2402204_+	pfam01293, PEPCK_ATP, Phosphoenolpyruvate carboxykinase	NA|130aa|up_3|NZ_CP025437.1_2402354_2402744_-	cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function	NA|351aa|up_2|NZ_CP025437.1_2403227_2404280_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|181aa|up_1|NZ_CP025437.1_2404286_2404829_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|512aa|up_0|NZ_CP025437.1_2405046_2406582_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|336aa|down_0|NZ_CP025437.1_2407511_2408519_+	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|257aa|down_1|NZ_CP025437.1_2408558_2409329_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|269aa|down_2|NZ_CP025437.1_2409315_2410122_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|154aa|down_3|NZ_CP025437.1_2410656_2411118_-	TIGR02705, conserved_hypothetical_protein, nucleoside triphosphatase YtkD	NA|83aa|down_4|NZ_CP025437.1_2411286_2411535_+	NA	NA|150aa|down_5|NZ_CP025437.1_2411607_2412057_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|79aa|down_6|NZ_CP025437.1_2412173_2412410_+	PRK00041, PRK00041, hypothetical protein; Validated	NA|43aa|down_7|NZ_CP025437.1_2412501_2412630_+	NA	NA|297aa|down_8|NZ_CP025437.1_2412749_2413640_+	cd01017, AdcA, Metal binding protein AdcA	NA|53aa|down_9|NZ_CP025437.1_2413701_2413860_+	pfam07561, DUF1540, Domain of Unknown Function (DUF1540)
GCF_003184245.1_ASM318424v1	NZ_CP025437	Bacillus coagulans strain LA204 chromosome, complete genome	10	2423749-2423849	8	CRISPRCasFinder	no		RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	GCGGGTGATGGGAATCGAACCCA	23	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	NA|43aa|up_9|NZ_CP025437.1_2412501_2412630_+,NA|60aa|down_5|NZ_CP025437.1_2439883_2440063_-	NA|43aa|up_9|NZ_CP025437.1_2412501_2412630_+	NA	NA|297aa|up_8|NZ_CP025437.1_2412749_2413640_+	cd01017, AdcA, Metal binding protein AdcA	NA|53aa|up_7|NZ_CP025437.1_2413701_2413860_+	pfam07561, DUF1540, Domain of Unknown Function (DUF1540)	NA|368aa|up_6|NZ_CP025437.1_2414188_2415292_-	cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids	NA|485aa|up_5|NZ_CP025437.1_2415288_2416743_-	PRK03640, PRK03640, o-succinylbenzoate--CoA ligase	NA|273aa|up_4|NZ_CP025437.1_2417320_2418139_-	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated	NA|268aa|up_3|NZ_CP025437.1_2418179_2418983_-	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	NA|582aa|up_2|NZ_CP025437.1_2418979_2420725_-	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated	NA|445aa|up_1|NZ_CP025437.1_2420726_2422061_-	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|308aa|up_0|NZ_CP025437.1_2422326_2423250_+	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|388aa|down_0|NZ_CP025437.1_2431615_2432779_+	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|217aa|down_1|NZ_CP025437.1_2433106_2433757_-	TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group	NA|267aa|down_2|NZ_CP025437.1_2433758_2434559_-	COG4652, COG4652, Uncharacterized protein conserved in bacteria [Function unknown]	NA|438aa|down_3|NZ_CP025437.1_2436704_2438018_+	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1	NA|432aa|down_4|NZ_CP025437.1_2438290_2439586_-	TIGR01654, unnamed_protein_product, bacteriocin-associated integral membrane (putative immunity) protein	NA|60aa|down_5|NZ_CP025437.1_2439883_2440063_-	NA	NA|302aa|down_6|NZ_CP025437.1_2440363_2441269_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|230aa|down_7|NZ_CP025437.1_2441359_2442049_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|375aa|down_8|NZ_CP025437.1_2442184_2443309_-	pfam07854, DUF1646, Protein of unknown function (DUF1646)	NA|129aa|down_9|NZ_CP025437.1_2443818_2444205_-	cd06174, MFS, Major Facilitator Superfamily
GCF_003184245.1_ASM318424v1	NZ_CP025437	Bacillus coagulans strain LA204 chromosome, complete genome	11	2731785-2731856	9	CRISPRCasFinder	no		RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	CCTATTTCAATTCCTTCTTCCTTC	24	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	NA|77aa|up_1|NZ_CP025437.1_2729402_2729633_-,NA|327aa|up_0|NZ_CP025437.1_2730269_2731250_+,NA|211aa|down_2|NZ_CP025437.1_2735461_2736094_-,NA|219aa|down_7|NZ_CP025437.1_2739763_2740420_+	NA|387aa|up_9|NZ_CP025437.1_2720174_2721335_-	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase	NA|755aa|up_8|NZ_CP025437.1_2721713_2723978_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|246aa|up_7|NZ_CP025437.1_2724067_2724805_+	TIGR02493, PFLA, pyruvate formate-lyase 1-activating enzyme	NA|186aa|up_6|NZ_CP025437.1_2725065_2725623_-	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|178aa|up_5|NZ_CP025437.1_2725641_2726175_-	PRK06770, PRK06770, hypothetical protein; Provisional	NA|327aa|up_4|NZ_CP025437.1_2726293_2727274_-	COG1277, NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]	NA|304aa|up_3|NZ_CP025437.1_2727270_2728182_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|268aa|up_2|NZ_CP025437.1_2728178_2728982_-	cd04506, SGNH_hydrolase_YpmR_like, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases	NA|77aa|up_1|NZ_CP025437.1_2729402_2729633_-	NA	NA|327aa|up_0|NZ_CP025437.1_2730269_2731250_+	NA	NA|233aa|down_0|NZ_CP025437.1_2733225_2733924_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|453aa|down_1|NZ_CP025437.1_2733923_2735282_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|211aa|down_2|NZ_CP025437.1_2735461_2736094_-	NA	NA|176aa|down_3|NZ_CP025437.1_2736386_2736914_+	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family	NA|437aa|down_4|NZ_CP025437.1_2737191_2738502_+	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated	NA|64aa|down_5|NZ_CP025437.1_2738843_2739035_+	cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A	NA|261aa|down_6|NZ_CP025437.1_2739024_2739807_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|219aa|down_7|NZ_CP025437.1_2739763_2740420_+	NA	NA|292aa|down_8|NZ_CP025437.1_2741238_2742114_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|155aa|down_9|NZ_CP025437.1_2742227_2742692_-	COG1846, MarR, Transcriptional regulators [Transcription]
GCF_003184245.1_ASM318424v1	NZ_CP025437	Bacillus coagulans strain LA204 chromosome, complete genome	12	2807679-2807770	10	CRISPRCasFinder	no		RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	CAAATAATTACCTGTTTAAGAAGAAC	26	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA	NA|1522aa|up_9|NZ_CP025437.1_2793354_2797920_+	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|486aa|up_8|NZ_CP025437.1_2798203_2799661_+	PRK12810, gltD, glutamate synthase subunit beta; Reviewed	NA|103aa|up_7|NZ_CP025437.1_2799791_2800100_-	pfam14118, YfzA, YfzA-like protein	NA|204aa|up_6|NZ_CP025437.1_2800160_2800772_-	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|292aa|up_5|NZ_CP025437.1_2800749_2801625_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|53aa|up_4|NZ_CP025437.1_2801955_2802114_-	pfam08176, SspK, Small acid-soluble spore protein K family	NA|327aa|up_3|NZ_CP025437.1_2802200_2803181_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|373aa|up_2|NZ_CP025437.1_2803359_2804478_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|106aa|up_1|NZ_CP025437.1_2806362_2806680_-	pfam08838, DUF1811, Protein of unknown function (DUF1811)	NA|272aa|up_0|NZ_CP025437.1_2806660_2807476_-	PRK14135, recX, recombination regulator RecX; Provisional	NA|61aa|down_0|NZ_CP025437.1_2807831_2808014_+	pfam14151, YfhD, YfhD-like protein	NA|264aa|down_1|NZ_CP025437.1_2808272_2809064_-	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional	NA|135aa|down_2|NZ_CP025437.1_2809056_2809461_-	PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional	NA|402aa|down_3|NZ_CP025437.1_2809453_2810659_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|475aa|down_4|NZ_CP025437.1_2810636_2812061_-	PRK09427, PRK09427, bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA|342aa|down_5|NZ_CP025437.1_2812061_2813087_-	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|200aa|down_6|NZ_CP025437.1_2813070_2813670_-	PRK05670, PRK05670, anthranilate synthase component II; Provisional	NA|461aa|down_7|NZ_CP025437.1_2813650_2815033_-	PRK13570, PRK13570, anthranilate synthase component I; Provisional	NA|394aa|down_8|NZ_CP025437.1_2816014_2817196_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|228aa|down_9|NZ_CP025437.1_2817192_2817876_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
GCF_003184245.1_ASM318424v1	NZ_CP025437	Bacillus coagulans strain LA204 chromosome, complete genome	13	2950998-2958411	4,1,11	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	 Type I-U?,Type I-U,Type I-C	NATTTCAATCCACGCCCCCATGTAGGGAGCGAC,ATTTCAATCCACGCCCCCATGTAGGGAGCGAC,ATTTCAATCCACGCCCCCATGTAGGGAGCGAC	33,32,32	4	4	2952152-2952185|2955113-2955146|2955443-2955475|2956034-2956067	NZ_CP025437.1_2540675-2540642|NZ_CP025437.1_2538551-2538518|NZ_CP025437.1_2548475-2548507|NZ_CP025437.1_2503290-2503323	I-C:I-C:I-C	112,109,111	112	TypeI-U?,TypeI-U,TypeI-C	RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	NA|203aa|up_8|NZ_CP025437.1_2942218_2942827_+,NA|141aa|up_7|NZ_CP025437.1_2942851_2943274_+,NA|43aa|up_1|NZ_CP025437.1_2949674_2949803_-,NA	NA|512aa|up_9|NZ_CP025437.1_2940396_2941932_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|203aa|up_8|NZ_CP025437.1_2942218_2942827_+	NA	NA|141aa|up_7|NZ_CP025437.1_2942851_2943274_+	NA	NA|294aa|up_6|NZ_CP025437.1_2943289_2944171_+	COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	NA|305aa|up_5|NZ_CP025437.1_2944193_2945108_-	pfam06207, DUF1002, Protein of unknown function (DUF1002)	NA|382aa|up_4|NZ_CP025437.1_2945494_2946640_-	PRK09420, cpdB, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA|436aa|up_3|NZ_CP025437.1_2947018_2948326_-	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|208aa|up_2|NZ_CP025437.1_2948985_2949609_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|43aa|up_1|NZ_CP025437.1_2949674_2949803_-	NA	NA|140aa|up_0|NZ_CP025437.1_2950380_2950800_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|472aa|down_0|NZ_CP025437.1_2958699_2960115_-	pfam06782, UPF0236, Uncharacterized protein family (UPF0236)	cas2|97aa|down_1|NZ_CP025437.1_2961272_2961563_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_2|NZ_CP025437.1_2961573_2962605_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|219aa|down_3|NZ_CP025437.1_2962601_2963258_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|287aa|down_4|NZ_CP025437.1_2963247_2964108_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|627aa|down_5|NZ_CP025437.1_2964131_2966012_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|240aa|down_6|NZ_CP025437.1_2966012_2966732_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|809aa|down_7|NZ_CP025437.1_2966929_2969356_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|1080aa|down_8|NZ_CP025437.1_2969802_2973042_-	pfam08455, SNF2_assoc, Bacterial SNF2 helicase associated	NA|196aa|down_9|NZ_CP025437.1_2973191_2973779_+	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD
GCF_003184245.1_ASM318424v1	NZ_CP025437	Bacillus coagulans strain LA204 chromosome, complete genome	14	2960212-2961104	12,5,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	 Type I-U?,Type I-U,Type I-C	ATTTCAATCCACGCCCCCATGTAGGGAGCGAC,ATTTCAATCCACGCCCCCATGTAGGGAGCGAC,ATTTCAATCCACGCCCCCATGTAGGGAGCGAC	32,32,32	0	0	NA	NA	I-C:I-C:I-C	13,13,12	13	TypeI-U?,TypeI-U,TypeI-C	RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	NA|203aa|up_9|NZ_CP025437.1_2942218_2942827_+,NA|141aa|up_8|NZ_CP025437.1_2942851_2943274_+,NA|43aa|up_2|NZ_CP025437.1_2949674_2949803_-,NA	NA|203aa|up_9|NZ_CP025437.1_2942218_2942827_+	NA	NA|141aa|up_8|NZ_CP025437.1_2942851_2943274_+	NA	NA|294aa|up_7|NZ_CP025437.1_2943289_2944171_+	COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	NA|305aa|up_6|NZ_CP025437.1_2944193_2945108_-	pfam06207, DUF1002, Protein of unknown function (DUF1002)	NA|382aa|up_5|NZ_CP025437.1_2945494_2946640_-	PRK09420, cpdB, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA|436aa|up_4|NZ_CP025437.1_2947018_2948326_-	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|208aa|up_3|NZ_CP025437.1_2948985_2949609_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|43aa|up_2|NZ_CP025437.1_2949674_2949803_-	NA	NA|140aa|up_1|NZ_CP025437.1_2950380_2950800_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|472aa|up_0|NZ_CP025437.1_2958699_2960115_-	pfam06782, UPF0236, Uncharacterized protein family (UPF0236)	cas2|97aa|down_0|NZ_CP025437.1_2961272_2961563_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_1|NZ_CP025437.1_2961573_2962605_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|219aa|down_2|NZ_CP025437.1_2962601_2963258_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|287aa|down_3|NZ_CP025437.1_2963247_2964108_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|627aa|down_4|NZ_CP025437.1_2964131_2966012_-	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas5|240aa|down_5|NZ_CP025437.1_2966012_2966732_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|809aa|down_6|NZ_CP025437.1_2966929_2969356_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|1080aa|down_7|NZ_CP025437.1_2969802_2973042_-	pfam08455, SNF2_assoc, Bacterial SNF2 helicase associated	NA|196aa|down_8|NZ_CP025437.1_2973191_2973779_+	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD	NA|165aa|down_9|NZ_CP025437.1_2974037_2974532_+	pfam07681, DoxX, DoxX
GCF_003184245.1_ASM318424v1	NZ_CP025437	Bacillus coagulans strain LA204 chromosome, complete genome	15	3615709-3615799	13	CRISPRCasFinder	no		RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	Orphan	CCATATAATAAAAAAGCACTCGA	23	0	0	NA	NA	NA	1	1	Orphan	RT,DinG,casR,cas3,DEDDh,csa3,cas6,csf3gr5,csf2gr7,csf1gr8,cas2,cas1,cas4,cas7,cas8c,cas5	NA,NA	NA|419aa|up_9|NZ_CP025437.1_3603122_3604379_-	cd17262, RMtype1_S_Aco12261I-TRD2-CR2, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Aminobacterium colombiense DSM 12261 S subunit (S	NA|507aa|up_8|NZ_CP025437.1_3604368_3605889_-	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|198aa|up_7|NZ_CP025437.1_3605905_3606499_-	pfam01381, HTH_3, Helix-turn-helix	NA|160aa|up_6|NZ_CP025437.1_3607730_3608210_-	pfam02590, SPOUT_MTase, Predicted SPOUT methyltransferase	NA|421aa|up_5|NZ_CP025437.1_3608508_3609771_-	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|265aa|up_4|NZ_CP025437.1_3609987_3610782_-	COG1235, PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]	NA|261aa|up_3|NZ_CP025437.1_3610798_3611581_-	pfam09648, YycI, YycH protein	NA|428aa|up_2|NZ_CP025437.1_3611567_3612851_-	pfam07435, YycH, YycH protein	NA|607aa|up_1|NZ_CP025437.1_3612847_3614668_-	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|237aa|up_0|NZ_CP025437.1_3614672_3615383_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|430aa|down_0|NZ_CP025437.1_3616361_3617651_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|452aa|down_1|NZ_CP025437.1_3617825_3619181_-	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|148aa|down_2|NZ_CP025437.1_3619400_3619844_-	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|658aa|down_3|NZ_CP025437.1_3619840_3621814_-	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|314aa|down_4|NZ_CP025437.1_3621849_3622791_-	pfam09991, DUF2232, Predicted membrane protein (DUF2232)	NA|80aa|down_5|NZ_CP025437.1_3622947_3623187_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|165aa|down_6|NZ_CP025437.1_3623231_3623726_-	PRK06751, PRK06751, single-stranded DNA-binding protein; Provisional	NA|96aa|down_7|NZ_CP025437.1_3623787_3624075_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|157aa|down_8|NZ_CP025437.1_3624328_3624799_-	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|398aa|down_9|NZ_CP025437.1_3624811_3626005_-	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II
