assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003180995.1_ASM318099v1	NZ_CP029579	Escherichia coli strain DA33137 chromosome, complete genome	1	1974782-1974931	1	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA,NA|532aa|down_6|NZ_CP029579.1_1982028_1983624_-	NA|340aa|up_9|NZ_CP029579.1_1962974_1963994_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP029579.1_1963997_1964561_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP029579.1_1964777_1965809_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP029579.1_1965832_1966597_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP029579.1_1966659_1967979_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP029579.1_1968045_1969044_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP029579.1_1969121_1970624_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP029579.1_1970784_1971867_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP029579.1_1971866_1972967_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP029579.1_1973233_1974745_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP029579.1_1975098_1975542_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP029579.1_1975541_1978397_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP029579.1_1978452_1979649_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP029579.1_1979841_1980345_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP029579.1_1980390_1980807_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP029579.1_1980968_1981973_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|532aa|down_6|NZ_CP029579.1_1982028_1983624_-	NA	NA|151aa|down_7|NZ_CP029579.1_1983746_1984199_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP029579.1_1984343_1984937_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|NZ_CP029579.1_1985007_1985721_+	PRK12742, PRK12742, SDR family oxidoreductase
GCF_003180995.1_ASM318099v1	NZ_CP029579	Escherichia coli strain DA33137 chromosome, complete genome	2	3388517-3388667	2	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	CAGCGTCGCATCAGGCATTGTGCACGATTGCCGGATGCGGCGTGAACGCCTT	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA,NA|275aa|down_7|NZ_CP029579.1_3397249_3398074_+	NA|296aa|up_9|NZ_CP029579.1_3380456_3381344_+	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|96aa|up_8|NZ_CP029579.1_3381462_3381750_+	pfam11115, DUF2623, Protein of unknown function (DUF2623)	NA|373aa|up_7|NZ_CP029579.1_3381938_3383057_+	PRK10468, PRK10468, hydrogenase 2 small subunit; Provisional	NA|329aa|up_6|NZ_CP029579.1_3383059_3384046_+	PRK10882, PRK10882, hydrogenase 2 operon protein HybA	NA|393aa|up_5|NZ_CP029579.1_3384035_3385214_+	PRK10881, PRK10881, Ni/Fe-hydrogenase cytochrome b subunit	NA|568aa|up_4|NZ_CP029579.1_3385210_3386914_+	PRK10467, PRK10467, hydrogenase 2 large subunit; Provisional	NA|165aa|up_3|NZ_CP029579.1_3386913_3387408_+	PRK10466, hybD, HyaD/HybD family hydrogenase maturation endopeptidase	NA|163aa|up_2|NZ_CP029579.1_3387400_3387889_+	PRK10465, PRK10465, hydrogenase-2 assembly chaperone	NA|114aa|up_1|NZ_CP029579.1_3387881_3388223_+	PRK12380, PRK12380, hydrogenase/urease nickel incorporation protein	NA|83aa|up_0|NZ_CP029579.1_3388235_3388484_+	PRK10413, PRK10413, hydrogenase maturation factor HybG	NA|289aa|down_0|NZ_CP029579.1_3388715_3389582_-	PRK11752, PRK11752, putative S-transferase; Provisional	NA|620aa|down_1|NZ_CP029579.1_3389786_3391646_+	PRK10507, PRK10507, bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional	NA|500aa|down_2|NZ_CP029579.1_3391937_3393437_+	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|231aa|down_3|NZ_CP029579.1_3393485_3394178_-	cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor	NA|238aa|down_4|NZ_CP029579.1_3394351_3395065_+	cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor	NA|253aa|down_5|NZ_CP029579.1_3395096_3395855_+	cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor	NA|450aa|down_6|NZ_CP029579.1_3395900_3397250_+	COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]	NA|275aa|down_7|NZ_CP029579.1_3397249_3398074_+	NA	NA|187aa|down_8|NZ_CP029579.1_3398085_3398646_+	COG3054, COG3054, Predicted transcriptional regulator [General function prediction only]	NA|357aa|down_9|NZ_CP029579.1_3398676_3399747_+	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF
GCF_003180995.1_ASM318099v1	NZ_CP029579	Escherichia coli strain DA33137 chromosome, complete genome	3	3774421-3774754	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,5,5	5	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA,NA	NA|919aa|up_9|NZ_CP029579.1_3761014_3763771_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP029579.1_3763827_3765129_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP029579.1_3765176_3767411_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP029579.1_3767488_3767737_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP029579.1_3767736_3768072_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP029579.1_3768143_3768935_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP029579.1_3769162_3770800_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP029579.1_3770886_3772185_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP029579.1_3772244_3773117_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP029579.1_3773410_3774082_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP029579.1_3775391_3776870_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP029579.1_3776896_3778174_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP029579.1_3778492_3779278_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP029579.1_3779347_3780802_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP029579.1_3780823_3782233_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP029579.1_3782210_3782990_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP029579.1_3782986_3783847_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|450aa|down_7|NZ_CP029579.1_3783946_3785295_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|192aa|down_8|NZ_CP029579.1_3785429_3786005_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|NZ_CP029579.1_3786021_3786282_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_003180995.1_ASM318099v1	NZ_CP029579	Escherichia coli strain DA33137 chromosome, complete genome	4	3801892-3802469	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAATCG,GTGTTCCCCGCGCCAGCGGGGATAAA,GTGTTCCCCGCGCCAGCGGGGATAAA	29,26,26	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	TypeI-E	DEDDh,DinG,c2c9_V-U4,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT	NA,NA	NA|245aa|up_9|NZ_CP029579.1_3791887_3792622_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP029579.1_3792886_3793039_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP029579.1_3793233_3795933_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP029579.1_3796030_3797593_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP029579.1_3797589_3798126_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP029579.1_3798140_3799196_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP029579.1_3799206_3799953_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP029579.1_3799934_3800585_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP029579.1_3800581_3801505_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP029579.1_3801501_3801795_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP029579.1_3802550_3803588_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP029579.1_3803839_3804748_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP029579.1_3804749_3806177_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP029579.1_3806176_3806782_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP029579.1_3806831_3807155_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP029579.1_3807348_3807660_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP029579.1_3807678_3808389_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP029579.1_3808388_3808868_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP029579.1_3808864_3809914_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP029579.1_3809894_3810656_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
