assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003180975.1_ASM318097v1	NZ_CP029574	Escherichia coli strain DA33133 chromosome, complete genome	1	1505585-1505734	1	CRISPRCasFinder	no		PD-DExK,csa3,cas3,DEDDh,RT,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csa3,cas3,DEDDh,RT,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|556aa|up_6|NZ_CP029574.1_1496818_1498486_+,NA	NA|238aa|up_9|NZ_CP029574.1_1494721_1495435_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP029574.1_1495505_1496099_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|NZ_CP029574.1_1496243_1496696_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|556aa|up_6|NZ_CP029574.1_1496818_1498486_+	NA	NA|335aa|up_5|NZ_CP029574.1_1498542_1499547_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP029574.1_1499708_1500125_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP029574.1_1500170_1500674_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP029574.1_1500866_1502063_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP029574.1_1502118_1504974_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP029574.1_1504973_1505417_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP029574.1_1505770_1507282_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP029574.1_1507548_1508649_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP029574.1_1508648_1509731_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP029574.1_1509849_1511352_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NZ_CP029574.1_1511429_1512428_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NZ_CP029574.1_1512494_1513814_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NZ_CP029574.1_1513878_1514643_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NZ_CP029574.1_1514666_1515698_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NZ_CP029574.1_1515914_1516478_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NZ_CP029574.1_1516481_1517501_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
GCF_003180975.1_ASM318097v1	NZ_CP029574	Escherichia coli strain DA33133 chromosome, complete genome	2	2277346-2277442	2	CRISPRCasFinder	no		PD-DExK,csa3,cas3,DEDDh,RT,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csa3,cas3,DEDDh,RT,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|454aa|up_9|NZ_CP029574.1_2265126_2266488_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP029574.1_2266544_2267846_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP029574.1_2267867_2269013_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP029574.1_2269240_2270026_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NZ_CP029574.1_2270036_2271272_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP029574.1_2271293_2272343_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP029574.1_2272659_2274327_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP029574.1_2274336_2275596_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP029574.1_2275606_2276422_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP029574.1_2276418_2277312_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP029574.1_2277506_2278574_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP029574.1_2278570_2279080_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP029574.1_2279197_2279920_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP029574.1_2279922_2280417_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP029574.1_2280590_2281976_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP029574.1_2282011_2282533_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP029574.1_2282640_2282853_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP029574.1_2282854_2283721_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP029574.1_2284191_2284734_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP029574.1_2284953_2285646_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_003180975.1_ASM318097v1	NZ_CP029574	Escherichia coli strain DA33133 chromosome, complete genome	3	4129551-4129677	3	CRISPRCasFinder	no		PD-DExK,csa3,cas3,DEDDh,RT,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csa3,cas3,DEDDh,RT,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|105aa|down_3|NZ_CP029574.1_4134241_4134556_+	NA|395aa|up_9|NZ_CP029574.1_4108458_4109643_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP029574.1_4109716_4110493_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP029574.1_4110497_4112147_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_CP029574.1_4112147_4116542_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP029574.1_4116685_4117309_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP029574.1_4117305_4118994_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP029574.1_4119142_4121770_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP029574.1_4121916_4122639_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP029574.1_4122766_4126519_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP029574.1_4127214_4129500_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP029574.1_4129733_4130864_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP029574.1_4130863_4131118_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP029574.1_4131171_4131822_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|105aa|down_3|NZ_CP029574.1_4134241_4134556_+	NA	NA|359aa|down_4|NZ_CP029574.1_4134774_4135851_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_5|NZ_CP029574.1_4135855_4137214_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_6|NZ_CP029574.1_4137486_4139115_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_7|NZ_CP029574.1_4139104_4140364_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_8|NZ_CP029574.1_4140360_4141551_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_9|NZ_CP029574.1_4141743_4142643_+	PRK09956, PRK09956, ISNCY family transposase
GCF_003180975.1_ASM318097v1	NZ_CP029574	Escherichia coli strain DA33133 chromosome, complete genome	4	4623137-4623838	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	PD-DExK,csa3,cas3,DEDDh,RT,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,11,8	11	TypeI-E	PD-DExK,csa3,cas3,DEDDh,RT,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP029574.1_4614948_4615710_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP029574.1_4615690_4616740_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP029574.1_4616736_4617216_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP029574.1_4617215_4617926_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP029574.1_4617944_4618256_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP029574.1_4618449_4618773_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP029574.1_4618822_4619428_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP029574.1_4619427_4620855_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP029574.1_4620856_4621765_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP029574.1_4622016_4623054_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|226aa|down_0|NZ_CP029574.1_4623955_4624633_+	pfam01527, HTH_Tnp_1, Transposase	NA|116aa|down_1|NZ_CP029574.1_4624632_4624980_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|524aa|down_2|NZ_CP029574.1_4624999_4626571_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	cas2|95aa|down_3|NZ_CP029574.1_4626650_4626935_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_4|NZ_CP029574.1_4626936_4627854_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_5|NZ_CP029574.1_4627869_4628469_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_6|NZ_CP029574.1_4628455_4629130_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_7|NZ_CP029574.1_4629132_4630224_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_8|NZ_CP029574.1_4630236_4630719_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|495aa|down_9|NZ_CP029574.1_4630711_4632196_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated
GCF_003180975.1_ASM318097v1	NZ_CP029574	Escherichia coli strain DA33133 chromosome, complete genome	5	4652096-4652489	2,5,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3	PD-DExK,csa3,cas3,DEDDh,RT,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	GGTTTATCCCCGCTGGCGCGGGGAAC,GGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	26,28,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Unclear	PD-DExK,csa3,cas3,DEDDh,RT,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|47aa|down_1|NZ_CP029574.1_4653638_4653779_+	NA|424aa|up_9|NZ_CP029574.1_4640738_4642010_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP029574.1_4642000_4642261_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP029574.1_4642277_4642853_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|298aa|up_6|NZ_CP029574.1_4643000_4643894_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP029574.1_4643857_4644637_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP029574.1_4644614_4646024_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP029574.1_4646045_4647500_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP029574.1_4647569_4648355_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP029574.1_4648673_4649951_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP029574.1_4649977_4651456_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP029574.1_4652828_4653500_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP029574.1_4653638_4653779_+	NA	NA|291aa|down_2|NZ_CP029574.1_4653792_4654665_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP029574.1_4654724_4656023_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP029574.1_4656110_4657748_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP029574.1_4657975_4658767_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP029574.1_4658837_4659173_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP029574.1_4659172_4659421_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP029574.1_4659498_4661733_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP029574.1_4661780_4663082_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
