assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003143915.1_ASM314391v1	NZ_CP029349	Lactiplantibacillus plantarum strain HAC01 chromosome, complete genome	1	24229-24530	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,csn2,cas2,cas1,cas9,WYL,RT	Orphan	GCTACTGCTAAGGCTCAAAGTACAGCTGACAATGCGTTTAGCCAAGC	47	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,cas3,csa3,csn2,cas2,cas1,cas9,WYL,RT	NA|147aa|up_7|NZ_CP029349.1_12473_12914_+,NA|128aa|up_6|NZ_CP029349.1_12910_13294_+,NA|128aa|up_4|NZ_CP029349.1_14134_14518_+,NA|64aa|up_3|NZ_CP029349.1_14514_14706_+,NA|85aa|down_0|NZ_CP029349.1_26938_27193_+,NA|54aa|down_1|NZ_CP029349.1_27196_27358_+,NA|295aa|down_2|NZ_CP029349.1_27341_28226_+	NA|113aa|up_9|NZ_CP029349.1_11799_12138_+	cd08054, gp6, Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins	NA|121aa|up_8|NZ_CP029349.1_12121_12484_+	TIGR01563, hypothetical_protein_AGR_C_1752, phage head-tail adaptor, putative, SPP1 family	NA|147aa|up_7|NZ_CP029349.1_12473_12914_+	NA	NA|128aa|up_6|NZ_CP029349.1_12910_13294_+	NA	NA|213aa|up_5|NZ_CP029349.1_13294_13933_+	pfam04630, Phage_TTP_1, Phage tail tube protein	NA|128aa|up_4|NZ_CP029349.1_14134_14518_+	NA	NA|64aa|up_3|NZ_CP029349.1_14514_14706_+	NA	NA|1723aa|up_2|NZ_CP029349.1_14718_19887_+	cd13402, LT_TF-like, lytic transglycosylase-like domain of tail fiber-like proteins and similar domains	NA|591aa|up_1|NZ_CP029349.1_19958_21731_+	pfam05709, Sipho_tail, Phage tail protein	NA|790aa|up_0|NZ_CP029349.1_21794_24164_+	TIGR01665, structural_protein, phage minor structural protein, N-terminal region	NA|85aa|down_0|NZ_CP029349.1_26938_27193_+	NA	NA|54aa|down_1|NZ_CP029349.1_27196_27358_+	NA	NA|295aa|down_2|NZ_CP029349.1_27341_28226_+	NA	NA|391aa|down_3|NZ_CP029349.1_28241_29414_+	cd06415, GH25_Cpl1-like, Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections	NA|88aa|down_4|NZ_CP029349.1_29413_29677_+	pfam10779, XhlA, Haemolysin XhlA	NA|177aa|down_5|NZ_CP029349.1_29689_30220_+	COG5546, COG5546, Small integral membrane protein [Function unknown]	NA|404aa|down_6|NZ_CP029349.1_31460_32672_+	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning]	NA|581aa|down_7|NZ_CP029349.1_33150_34893_+	COG4986, COG4986, ABC-type anion transport system, duplicated permease component [Inorganic ion transport and metabolism]	NA|264aa|down_8|NZ_CP029349.1_34911_35703_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|395aa|down_9|NZ_CP029349.1_35683_36868_+	COG1316, LytR, Transcriptional regulator [Transcription]
GCF_003143915.1_ASM314391v1	NZ_CP029349	Lactiplantibacillus plantarum strain HAC01 chromosome, complete genome	2	536632-536870	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,csa3,csn2,cas2,cas1,cas9,WYL,RT	Orphan	GCCGACGCTGCTAAGCTTGGGTCAGTGGGCTCAAATACTTCCGTGGG	47	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,cas3,csa3,csn2,cas2,cas1,cas9,WYL,RT	NA,NA|114aa|down_7|NZ_CP029349.1_543062_543404_+	NA|113aa|up_9|NZ_CP029349.1_524488_524827_-	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|469aa|up_8|NZ_CP029349.1_525120_526527_-	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|156aa|up_7|NZ_CP029349.1_526523_526991_-	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|413aa|up_6|NZ_CP029349.1_526977_528216_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|434aa|up_5|NZ_CP029349.1_528199_529501_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|266aa|up_4|NZ_CP029349.1_529513_530311_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|75aa|up_3|NZ_CP029349.1_530566_530791_+	pfam04023, FeoA, FeoA domain	NA|663aa|up_2|NZ_CP029349.1_530792_532781_+	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|55aa|up_1|NZ_CP029349.1_532797_532962_+	pfam12669, P12, Virus attachment protein p12 family	NA|437aa|up_0|NZ_CP029349.1_533250_534561_-	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional	NA|214aa|down_0|NZ_CP029349.1_537553_538195_-	cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain	NA|108aa|down_1|NZ_CP029349.1_538363_538687_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|215aa|down_2|NZ_CP029349.1_538830_539475_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|262aa|down_3|NZ_CP029349.1_539560_540346_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|402aa|down_4|NZ_CP029349.1_540464_541670_-	pfam05975, EcsB, Bacterial ABC transporter protein EcsB	NA|246aa|down_5|NZ_CP029349.1_541662_542400_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|151aa|down_6|NZ_CP029349.1_542599_543052_+	cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides	NA|114aa|down_7|NZ_CP029349.1_543062_543404_+	NA	NA|299aa|down_8|NZ_CP029349.1_543636_544533_+	PRK04405, prsA, peptidylprolyl isomerase; Provisional	NA|235aa|down_9|NZ_CP029349.1_545006_545711_+	pfam13731, WxL, WxL domain surface cell wall-binding
GCF_003143915.1_ASM314391v1	NZ_CP029349	Lactiplantibacillus plantarum strain HAC01 chromosome, complete genome	3	672510-676627	1	CRT	no		DEDDh,DinG,cas3,csa3,csn2,cas2,cas1,cas9,WYL,RT	Orphan	NNNNNNTCNGANTCNGANTCNCTGTCNGAGTC	32	1	1	672662-672689	NZ_CP029349.1_676628-676655	NA	45	45	Orphan	DEDDh,DinG,cas3,csa3,csn2,cas2,cas1,cas9,WYL,RT	NA|66aa|up_3|NZ_CP029349.1_666764_666962_-,NA|545aa|up_0|NZ_CP029349.1_670063_671698_-,NA|240aa|down_2|NZ_CP029349.1_684827_685547_+	NA|279aa|up_9|NZ_CP029349.1_658584_659421_+	cd01171, YXKO-related, B	NA|247aa|up_8|NZ_CP029349.1_659557_660298_-	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|557aa|up_7|NZ_CP029349.1_660305_661976_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|809aa|up_6|NZ_CP029349.1_662499_664926_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|228aa|up_5|NZ_CP029349.1_665388_666072_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|176aa|up_4|NZ_CP029349.1_666141_666669_+	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|66aa|up_3|NZ_CP029349.1_666764_666962_-	NA	NA|509aa|up_2|NZ_CP029349.1_666991_668518_-	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|503aa|up_1|NZ_CP029349.1_668528_670037_-	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|545aa|up_0|NZ_CP029349.1_670063_671698_-	NA	NA|501aa|down_0|NZ_CP029349.1_681787_683290_-	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|397aa|down_1|NZ_CP029349.1_683426_684617_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|240aa|down_2|NZ_CP029349.1_684827_685547_+	NA	NA|569aa|down_3|NZ_CP029349.1_685503_687210_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|499aa|down_4|NZ_CP029349.1_687383_688880_-	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|310aa|down_5|NZ_CP029349.1_689280_690210_-	PRK09485, mmuM, homocysteine methyltransferase; Provisional	NA|461aa|down_6|NZ_CP029349.1_690323_691706_+	PRK11387, PRK11387, S-methylmethionine permease	NA|325aa|down_7|NZ_CP029349.1_692037_693012_+	pfam00762, Ferrochelatase, Ferrochelatase	NA|442aa|down_8|NZ_CP029349.1_692983_694309_+	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|279aa|down_9|NZ_CP029349.1_695147_695984_+	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain
GCF_003143915.1_ASM314391v1	NZ_CP029349	Lactiplantibacillus plantarum strain HAC01 chromosome, complete genome	4	1684960-1685655	2,1,3	CRT,PILER-CR,CRISPRCasFinder	no	csa3,csn2,cas2,cas1,cas9	DEDDh,DinG,cas3,csa3,csn2,cas2,cas1,cas9,WYL,RT	Type II-C,Type II-A,Type II-B	GTTCTAAACCTGTTTGATATGACTACTATTCAAGAC,GTTCTAAACCTGTTTGATATGACTACTATTCAAGAC,GTTCTAAACCTGTTTGATATGACTACTATTCAAGAC	36,36,36	0	0	NA	NA	NA:NA:NA	10,9,9	10	TypeII-C,TypeII-A,TypeII-B	DEDDh,DinG,cas3,csa3,csn2,cas2,cas1,cas9,WYL,RT	NA,NA|236aa|down_5|NZ_CP029349.1_1692908_1693616_-	csa3|100aa|up_9|NZ_CP029349.1_1676219_1676519_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|411aa|up_8|NZ_CP029349.1_1676609_1677842_-	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|95aa|up_7|NZ_CP029349.1_1678230_1678515_+	smart00850, LytTR, LytTr DNA-binding domain	NA|152aa|up_6|NZ_CP029349.1_1678511_1678967_+	pfam11457, DUF3021, Protein of unknown function (DUF3021)	NA|141aa|up_5|NZ_CP029349.1_1679054_1679477_-	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|158aa|up_4|NZ_CP029349.1_1679622_1680096_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|201aa|up_3|NZ_CP029349.1_1680208_1680811_+	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|65aa|up_2|NZ_CP029349.1_1680876_1681071_+	pfam04024, PspC, PspC domain	NA|253aa|up_1|NZ_CP029349.1_1681113_1681872_-	cd09007, NP-I_spr0068, uncharacterized subfamily of the nucleoside phosphorylase-I family	NA|913aa|up_0|NZ_CP029349.1_1682156_1684895_+	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	csn2|226aa|down_0|NZ_CP029349.1_1685679_1686357_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|102aa|down_1|NZ_CP029349.1_1686353_1686659_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|NZ_CP029349.1_1686636_1687542_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1359aa|down_3|NZ_CP029349.1_1687736_1691813_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|261aa|down_4|NZ_CP029349.1_1692101_1692884_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|236aa|down_5|NZ_CP029349.1_1692908_1693616_-	NA	NA|455aa|down_6|NZ_CP029349.1_1693733_1695098_-	PRK10746, PRK10746, putative transport protein YifK; Provisional	NA|157aa|down_7|NZ_CP029349.1_1695330_1695801_+	cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|531aa|down_8|NZ_CP029349.1_1695916_1697509_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|247aa|down_9|NZ_CP029349.1_1697752_1698493_-	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]
