assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003112205.1_ASM311220v1	NZ_CP028122	Escherichia coli O43 str. RM10042 chromosome, complete genome	1	561090-561186	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|454aa|up_9|NZ_CP028122.1_548969_550331_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP028122.1_550387_551689_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP028122.1_551710_552856_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP028122.1_552984_553770_-	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|412aa|up_5|NZ_CP028122.1_553780_555016_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP028122.1_555037_556087_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP028122.1_556403_558071_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP028122.1_558080_559340_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP028122.1_559350_560166_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP028122.1_560162_561056_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP028122.1_561250_562318_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP028122.1_562314_562824_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP028122.1_562941_563664_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP028122.1_563666_564161_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP028122.1_564334_565720_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP028122.1_565755_566277_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP028122.1_566384_566597_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP028122.1_566598_567465_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP028122.1_567945_568488_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP028122.1_568707_569400_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_003112205.1_ASM311220v1	NZ_CP028122	Escherichia coli O43 str. RM10042 chromosome, complete genome	2	3129408-3130290	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,14,14	14	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP028122.1_3121220_3121982_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP028122.1_3121962_3123012_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP028122.1_3123008_3123488_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP028122.1_3123487_3124198_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP028122.1_3124216_3124528_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP028122.1_3124721_3125045_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP028122.1_3125094_3125700_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP028122.1_3125699_3127127_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP028122.1_3127128_3128037_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP028122.1_3128288_3129326_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP028122.1_3130411_3130705_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP028122.1_3130704_3131625_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP028122.1_3131621_3132272_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP028122.1_3132253_3133000_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP028122.1_3133010_3134066_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP028122.1_3134077_3134614_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP028122.1_3134610_3136173_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP028122.1_3136270_3138970_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP028122.1_3139163_3139316_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP028122.1_3139580_3140315_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_003112205.1_ASM311220v1	NZ_CP028122	Escherichia coli O43 str. RM10042 chromosome, complete genome	3	3156015-3156409	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|47aa|down_1|NZ_CP028122.1_3157558_3157699_+	NA|424aa|up_9|NZ_CP028122.1_3144658_3145930_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP028122.1_3145920_3146181_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP028122.1_3146197_3146773_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP028122.1_3146920_3147781_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP028122.1_3147777_3148557_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP028122.1_3148534_3149944_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP028122.1_3149965_3151420_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP028122.1_3151489_3152275_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP028122.1_3152593_3153871_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP028122.1_3153897_3155376_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP028122.1_3156748_3157420_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP028122.1_3157558_3157699_+	NA	NA|291aa|down_2|NZ_CP028122.1_3157712_3158585_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP028122.1_3158644_3159943_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP028122.1_3160030_3161668_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP028122.1_3161895_3162687_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP028122.1_3162757_3163093_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP028122.1_3163092_3163341_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP028122.1_3163418_3165653_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP028122.1_3165700_3167002_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_003112205.1_ASM311220v1	NZ_CP028122	Escherichia coli O43 str. RM10042 chromosome, complete genome	4	4157106-4157256	4	CRISPRCasFinder	no	cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	CTTTGGGCAATTGAAGCCCTCTGT	24	0	0	NA	NA	NA	2	2	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|62aa|up_7|NZ_CP028122.1_4152321_4152507_+,NA|70aa|up_6|NZ_CP028122.1_4152510_4152720_+,NA|64aa|up_5|NZ_CP028122.1_4152764_4152956_+,NA|150aa|up_3|NZ_CP028122.1_4155242_4155692_+,NA|129aa|down_0|NZ_CP028122.1_4157334_4157721_-	NA|259aa|up_9|NZ_CP028122.1_4149495_4150272_+	pfam13455, MUG113, Meiotically up-regulated gene 113	NA|466aa|up_8|NZ_CP028122.1_4150474_4151872_+	pfam10554, Phage_ASH, Ash protein family	NA|62aa|up_7|NZ_CP028122.1_4152321_4152507_+	NA	NA|70aa|up_6|NZ_CP028122.1_4152510_4152720_+	NA	NA|64aa|up_5|NZ_CP028122.1_4152764_4152956_+	NA	NA|608aa|up_4|NZ_CP028122.1_4153132_4154956_+	COG3378, COG3378, Phage associated DNA primase [General function prediction only]	NA|150aa|up_3|NZ_CP028122.1_4155242_4155692_+	NA	NA|150aa|up_2|NZ_CP028122.1_4155688_4156138_+	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|156aa|up_1|NZ_CP028122.1_4156154_4156622_+	pfam04352, ProQ, ProQ/FINO family	NA|98aa|up_0|NZ_CP028122.1_4156590_4156884_+	pfam06069, PerC, PerC transcriptional activator	NA|129aa|down_0|NZ_CP028122.1_4157334_4157721_-	NA	NA|154aa|down_1|NZ_CP028122.1_4157815_4158277_+	pfam06069, PerC, PerC transcriptional activator	NA|131aa|down_2|NZ_CP028122.1_4159618_4160011_+	pfam06530, Phage_antitermQ, Phage antitermination protein Q	NA|275aa|down_3|NZ_CP028122.1_4161357_4162182_+	PRK11525, dinD, DNA-damage-inducible protein D; Provisional	NA|206aa|down_4|NZ_CP028122.1_4162473_4163091_+	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|561aa|down_5|NZ_CP028122.1_4163087_4164770_-	PRK08097, ligB, NAD-dependent DNA ligase LigB	NA|208aa|down_6|NZ_CP028122.1_4165027_4165651_+	PRK00300, gmk, guanylate kinase; Provisional	NA|92aa|down_7|NZ_CP028122.1_4165705_4165981_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|703aa|down_8|NZ_CP028122.1_4165999_4168108_+	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA|230aa|down_9|NZ_CP028122.1_4168114_4168804_+	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional
GCF_003112205.1_ASM311220v1	NZ_CP028122	Escherichia coli O43 str. RM10042 chromosome, complete genome	5	4943436-4943575	5	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TGTGTAGGTCGGATAAGGCGCTCACGCCGCATCCGACAATAACA	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|532aa|up_5|NZ_CP028122.1_4934808_4936404_+,NA|354aa|down_5|NZ_CP028122.1_4951380_4952442_-	NA|132aa|up_9|NZ_CP028122.1_4932185_4932581_-	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|238aa|up_8|NZ_CP028122.1_4932711_4933425_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_7|NZ_CP028122.1_4933495_4934089_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_6|NZ_CP028122.1_4934233_4934686_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|532aa|up_5|NZ_CP028122.1_4934808_4936404_+	NA	NA|335aa|up_4|NZ_CP028122.1_4936460_4937465_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_3|NZ_CP028122.1_4937626_4938043_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_2|NZ_CP028122.1_4938088_4938592_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|952aa|up_1|NZ_CP028122.1_4940035_4942891_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP028122.1_4942890_4943334_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP028122.1_4943591_4945103_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP028122.1_4945369_4946470_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP028122.1_4946469_4947552_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP028122.1_4947670_4949173_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP028122.1_4949302_4950322_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|354aa|down_5|NZ_CP028122.1_4951380_4952442_-	NA	NA|380aa|down_6|NZ_CP028122.1_4952392_4953532_-	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|291aa|down_7|NZ_CP028122.1_4954465_4955338_-	COG3440, COG3440, Predicted restriction endonuclease [Defense mechanisms]	NA|41aa|down_8|NZ_CP028122.1_4955419_4955542_+	COG3183, COG3183, Predicted restriction endonuclease [Defense mechanisms]	NA|327aa|down_9|NZ_CP028122.1_4955549_4956530_-	pfam03629, SASA, Carbohydrate esterase, sialic acid-specific acetylesterase
