The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP028894	Vibrio cholerae strain A1552 chromosome 1, complete sequence	3015094	275451	284069	3015094	transposase,integrase,tRNA	Vibrio_phage(33.33%)	7	276531:276543	283178:283190
WP_100068541.1|275451_276628_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	65.1	8.6e-118
276531:276543	attL	AGCCAGCTCAGGC	NA	NA	NA	NA
WP_001129565.1|276664_277906_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	47.3	9.1e-110
WP_000372618.1|278291_280169_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	32.9	1.5e-34
WP_000907210.1|280267_282031_-	DNA primase	NA	A0A1S5RG58	Helicobacter_phage	30.7	1.1e-44
WP_001173892.1|282120_282564_-	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	49.3	3.7e-29
WP_001145625.1|282593_282809_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_001220122.1|283049_284069_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	57.4	2.6e-107
283178:283190	attR	GCCTGAGCTGGCT	NA	NA	NA	NA
>prophage 2
NZ_CP028894	Vibrio cholerae strain A1552 chromosome 1, complete sequence	3015094	290238	297456	3015094		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_000698379.1|290238_290991_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	8.0e-69
WP_000002982.1|290983_291610_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_053036405.1|291609_292539_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.7e-05
WP_000116737.1|292612_293620_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_001894770.1|293712_296301_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
WP_001279365.1|296568_297456_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
>prophage 3
NZ_CP028894	Vibrio cholerae strain A1552 chromosome 1, complete sequence	3015094	529079	536272	3015094		Faustovirus(16.67%)	9	NA	NA
WP_000775253.1|529079_530294_+	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
WP_000331703.1|530330_530714_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000301571.1|530774_531098_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_001105747.1|531146_531662_+	co-chaperone HscB	NA	NA	NA	NA	NA
WP_001196560.1|531685_533536_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
WP_001124187.1|533549_533888_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_000872176.1|533936_534131_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_000107237.1|534350_535640_+	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_001162850.1|535843_536272_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
>prophage 4
NZ_CP028894	Vibrio cholerae strain A1552 chromosome 1, complete sequence	3015094	1275278	1361895	3015094	head,protease,coat,terminase,tail,transposase,portal,capsid	Vibrio_phage(45.71%)	74	NA	NA
WP_149591715.1|1275278_1277384_-	RTX toxin T1SS ABC transporter subunit RtxB	NA	W8CYL7	Bacillus_phage	27.1	4.9e-39
WP_001906284.1|1277810_1278158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001881196.1|1278183_1278645_+	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA	NA
WP_000517826.1|1278668_1292306_+	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
WP_000053920.1|1292673_1292898_-	RstC protein	NA	U5TMI6	Satellite_phage	100.0	1.1e-34
WP_001911551.1|1292991_1293342_-	hypothetical protein	NA	U5TMH5	Satellite_phage	100.0	1.0e-63
WP_000743997.1|1293343_1294423_-	hypothetical protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_000693566.1|1294548_1294887_+	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000593522.1|1295499_1295874_-	cholera enterotoxin binding subunit CtxB	NA	Q77DH7	Vibrio_virus	100.0	7.8e-65
WP_001881225.1|1295870_1296647_-	cholera enterotoxin catalytic subunit CtxA	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
WP_000021616.1|1296745_1297945_-	zonula occludens toxin ZOT	NA	A0A142I6Z1	Vibrio_phage	100.0	5.3e-240
WP_000979342.1|1297941_1298235_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_001268534.1|1298231_1299419_-|coat	minor coat protein pIII	coat	A0A142I701	Vibrio_phage	100.0	1.4e-200
WP_000493022.1|1299525_1299774_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_000842207.1|1299909_1300266_-	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	9.7e-65
WP_000743997.1|1300267_1301347_-	hypothetical protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_000693566.1|1301472_1301811_+	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000170634.1|1302300_1302885_-	DNA-binding protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
WP_001161489.1|1302877_1303045_-	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_001052672.1|1303122_1303815_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000512956.1|1303944_1304214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001881266.1|1304233_1305802_-	replication protein	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
WP_000005769.1|1305978_1306530_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001161489.1|1307728_1307896_-	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_001052672.1|1307973_1308666_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000512956.1|1308795_1309065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001881266.1|1309084_1310653_-	replication protein	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
WP_000005769.1|1310829_1311381_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_156991674.1|1311725_1312911_+|transposase	IS3-like element ISVch4 family transposase	transposase	Q716C2	Shigella_phage	65.1	1.5e-117
WP_000948761.1|1313820_1314132_-	hypothetical protein	NA	E3U9J1	Vibrio_phage	100.0	6.6e-09
WP_001918575.1|1314290_1314608_-	DUF3634 family protein	NA	NA	NA	NA	NA
WP_000877146.1|1314627_1315077_-	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_000194428.1|1315240_1316890_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_001180252.1|1316954_1317473_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_001881287.1|1317555_1317729_-	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000087036.1|1317896_1319591_-	DUF3466 family protein	NA	NA	NA	NA	NA
WP_001174034.1|1319596_1321516_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.7	7.6e-55
WP_000631987.1|1321493_1321736_-	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_001077794.1|1321744_1323871_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
WP_000917529.1|1324330_1324873_-	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000966885.1|1325027_1326038_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_000126926.1|1326111_1330953_-	NAD-glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_001110339.1|1331141_1331360_-	DUF2835 domain-containing protein	NA	NA	NA	NA	NA
WP_000377996.1|1331411_1334036_-	aminopeptidase N	NA	NA	NA	NA	NA
WP_001994019.1|1334108_1334345_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001241333.1|1335293_1335806_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001912825.1|1336122_1337388_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_000347185.1|1337389_1337812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000092362.1|1337875_1338241_-	peptidase M15	NA	A0A2I7RAT1	Vibrio_phage	60.3	8.7e-37
WP_000279700.1|1338224_1338782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000291407.1|1338781_1339789_-	radical SAM protein	NA	NA	NA	NA	NA
WP_001005176.1|1339805_1340171_-	hypothetical protein	NA	C8ZKF3	Pseudomonas_phage	46.2	1.8e-05
WP_000521739.1|1340171_1346114_-	fibronectin type III domain-containing protein	NA	M4MHT9	Vibrio_phage	30.9	2.0e-98
WP_000491559.1|1346117_1346513_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000168946.1|1346515_1347055_-	hypothetical protein	NA	M4MD40	Vibrio_phage	35.1	4.5e-21
WP_000250921.1|1347065_1347647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000907543.1|1347648_1349961_-	hypothetical protein	NA	A0A1Q1PW43	Pseudoalteromonas_phage	22.6	4.4e-09
WP_000967642.1|1349977_1350268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001081280.1|1350312_1350648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000907300.1|1350700_1351171_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001994025.1|1351184_1351508_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000049624.1|1351555_1352167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001252475.1|1352153_1352501_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_000020008.1|1352512_1353064_-	hypothetical protein	NA	A0A2I7QU98	Vibrio_phage	28.0	8.9e-09
WP_000667008.1|1353078_1354269_-|capsid	phage major capsid protein	capsid	M4MA06	Vibrio_phage	33.3	1.3e-36
WP_000944879.1|1354367_1355216_-|head,protease	HK97 family phage prohead protease	head,protease	Q6JIM8	Burkholderia_virus	39.1	7.0e-29
WP_000523754.1|1355178_1356504_-|portal	phage portal protein	portal	M4MHV5	Vibrio_phage	38.9	1.2e-75
WP_001070130.1|1356513_1358274_-|terminase	terminase large subunit	terminase	A0A0K1LKI4	Staphylococcus_phage	35.9	1.1e-81
WP_000165579.1|1358464_1358680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001046237.1|1358707_1359388_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001994028.1|1359384_1359828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080004477.1|1359970_1360381_-|terminase	phage terminase small subunit P27 family	terminase	A0A1W6JP17	Morganella_phage	31.6	5.8e-05
WP_000243876.1|1360851_1361040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000858033.1|1361250_1361895_+	antirestriction protein	NA	G0YPX7	Erwinia_phage	33.5	1.1e-10
>prophage 5
NZ_CP028894	Vibrio cholerae strain A1552 chromosome 1, complete sequence	3015094	1366550	1374277	3015094		Diadromus_pulchellus_ascovirus(14.29%)	9	NA	NA
WP_001146354.1|1366550_1367138_-	deoxynucleoside kinase	NA	F2NYY4	Diadromus_pulchellus_ascovirus	33.1	2.1e-08
WP_000576446.1|1367157_1367427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000275003.1|1367631_1368225_-	deoxynucleoside kinase	NA	A0A249Y6S3	Cherax_quadricarinatus_iridovirus	30.0	3.7e-08
WP_000784089.1|1368357_1368615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001912807.1|1368611_1368896_-	hypothetical protein	NA	A0A142K9B6	Gordonia_phage	51.9	3.9e-08
WP_001044551.1|1369078_1369939_-	exonuclease	NA	F1D0G7	Vibrio_phage	43.0	3.1e-56
WP_000467314.1|1370132_1370564_-	tellurite resistance TerB family protein	NA	Q1MVI3	Enterobacteria_phage	47.9	2.1e-29
WP_000983185.1|1370588_1372643_-	hypothetical protein	NA	A0A0F7DD46	Delftia_phage	40.8	7.1e-144
WP_000046513.1|1372642_1374277_-	toprim domain-containing protein	NA	L7TLT7	Rhizobium_phage	49.0	1.6e-122
>prophage 6
NZ_CP028894	Vibrio cholerae strain A1552 chromosome 1, complete sequence	3015094	2198888	2205505	3015094		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000864130.1|2198888_2199359_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
WP_001122865.1|2199623_2200733_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000493874.1|2200773_2201427_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001131994.1|2201431_2202535_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
WP_000543544.1|2202560_2203010_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_000366574.1|2203109_2204360_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000210573.1|2204371_2205505_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
