assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003086595.1_ASM308659v1	NZ_CP029146	Rhodococcus ruber strain SD3 chromosome, complete genome	1	1047917-1048072	1	CRISPRCasFinder	no		c2c9_V-U4,Cas9_archaeal,csa3,cas3,WYL,DinG,DEDDh,cas4	Orphan	GCGGTGGTGGATTTCGCGGTGCCGGATCGTGCGGTG	36	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,Cas9_archaeal,csa3,cas3,WYL,DinG,DEDDh,cas4	NA|143aa|up_0|NZ_CP029146.1_1047255_1047684_-,NA|63aa|down_5|NZ_CP029146.1_1056341_1056530_+,NA|81aa|down_8|NZ_CP029146.1_1058013_1058256_-	NA|138aa|up_9|NZ_CP029146.1_1038973_1039387_-	cd07251, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|304aa|up_8|NZ_CP029146.1_1039397_1040309_-	PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional	NA|363aa|up_7|NZ_CP029146.1_1040660_1041749_+	cd13554, PBP2_DszB, Substrate binding domain of 2'-hydroxybiphenyl-2-sulfinate desulfinase, a member of the type 2 periplasmic binding fold superfamily	NA|273aa|up_6|NZ_CP029146.1_1041745_1042564_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|291aa|up_5|NZ_CP029146.1_1042556_1043429_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|450aa|up_4|NZ_CP029146.1_1043462_1044812_+	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family	NA|329aa|up_3|NZ_CP029146.1_1044915_1045902_+	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family	NA|188aa|up_2|NZ_CP029146.1_1045915_1046479_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|216aa|up_1|NZ_CP029146.1_1046481_1047129_-	pfam11580, DUF3239, Protein of unknown function (DUF3239)	NA|143aa|up_0|NZ_CP029146.1_1047255_1047684_-	NA	NA|469aa|down_0|NZ_CP029146.1_1048457_1049864_+	COG2851, CitM, H+/citrate symporter [Energy production and conversion]	NA|558aa|down_1|NZ_CP029146.1_1049932_1051606_+	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	NA|223aa|down_2|NZ_CP029146.1_1051587_1052256_+	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	NA|553aa|down_3|NZ_CP029146.1_1052263_1053922_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|761aa|down_4|NZ_CP029146.1_1053998_1056281_-	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain	NA|63aa|down_5|NZ_CP029146.1_1056341_1056530_+	NA	NA|195aa|down_6|NZ_CP029146.1_1056594_1057179_-	pfam06737, Transglycosylas, Transglycosylase-like domain	NA|131aa|down_7|NZ_CP029146.1_1057624_1058017_-	PRK11770, PRK11770, YccF domain-containing protein	NA|81aa|down_8|NZ_CP029146.1_1058013_1058256_-	NA	NA|137aa|down_9|NZ_CP029146.1_1058423_1058834_+	COG1278, CspC, Cold shock proteins [Transcription]
GCF_003086595.1_ASM308659v1	NZ_CP029146	Rhodococcus ruber strain SD3 chromosome, complete genome	2	3063890-3063966	2	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,Cas9_archaeal,csa3,cas3,WYL,DinG,DEDDh,cas4	Unclear	CCGCCGAGTCCGCCGCCGCGATC	23	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,Cas9_archaeal,csa3,cas3,WYL,DinG,DEDDh,cas4	NA|136aa|up_7|NZ_CP029146.1_3054679_3055087_-,NA|72aa|down_3|NZ_CP029146.1_3067297_3067513_-	NA|92aa|up_9|NZ_CP029146.1_3053181_3053457_+	pfam01037, AsnC_trans_reg, Lrp/AsnC ligand binding domain	NA|349aa|up_8|NZ_CP029146.1_3053540_3054587_-	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|136aa|up_7|NZ_CP029146.1_3054679_3055087_-	NA	NA|204aa|up_6|NZ_CP029146.1_3055263_3055875_+	COG1845, CyoC, Heme/copper-type cytochrome/quinol oxidase, subunit 3 [Energy production and conversion]	NA|278aa|up_5|NZ_CP029146.1_3055974_3056808_+	COG2010, CccA, Cytochrome c, mono- and diheme variants [Energy production and conversion]	NA|376aa|up_4|NZ_CP029146.1_3056804_3057932_+	COG0723, QcrA, Rieske Fe-S protein [Energy production and conversion]	NA|550aa|up_3|NZ_CP029146.1_3057928_3059578_+	pfam13631, Cytochrom_B_N_2, Cytochrome b(N-terminal)/b6/petB	NA|292aa|up_2|NZ_CP029146.1_3059716_3060592_-	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)	NA|139aa|up_1|NZ_CP029146.1_3061173_3061590_-	pfam12270, Cyt_c_ox_IV, Cytochrome c oxidase subunit IV	NA|355aa|up_0|NZ_CP029146.1_3061621_3062686_-	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]	NA|324aa|down_0|NZ_CP029146.1_3064947_3065919_-	cd01942, ribokinase_group_A, Ribokinase-like subgroup A	NA|117aa|down_1|NZ_CP029146.1_3066032_3066383_-	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]	NA|222aa|down_2|NZ_CP029146.1_3066528_3067194_+	pfam11241, DUF3043, Protein of unknown function (DUF3043)	NA|72aa|down_3|NZ_CP029146.1_3067297_3067513_-	NA	NA|368aa|down_4|NZ_CP029146.1_3067647_3068751_+	PRK00105, cobT, nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed	NA|251aa|down_5|NZ_CP029146.1_3068750_3069503_+	PRK00235, cobS, cobalamin synthase; Reviewed	NA|368aa|down_6|NZ_CP029146.1_3069518_3070622_-	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|367aa|down_7|NZ_CP029146.1_3070655_3071756_-	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|503aa|down_8|NZ_CP029146.1_3071830_3073339_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|586aa|down_9|NZ_CP029146.1_3073596_3075354_+	TIGR02927, putative_dihydrolipoamide_acyltransferase, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
GCF_003086595.1_ASM308659v1	NZ_CP029146	Rhodococcus ruber strain SD3 chromosome, complete genome	3	3593881-3593969	3	CRISPRCasFinder	no		c2c9_V-U4,Cas9_archaeal,csa3,cas3,WYL,DinG,DEDDh,cas4	Orphan	CGGTCGTTGCCCGCGGCGAGGGC	23	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,Cas9_archaeal,csa3,cas3,WYL,DinG,DEDDh,cas4	NA,NA|116aa|down_5|NZ_CP029146.1_3674439_3674787_-	NA|228aa|up_9|NZ_CP029146.1_3573626_3574310_-	PRK05319, rplD, 50S ribosomal protein L4; Provisional	NA|218aa|up_8|NZ_CP029146.1_3574306_3574960_-	PRK00001, rplC, 50S ribosomal protein L3; Validated	NA|102aa|up_7|NZ_CP029146.1_3575005_3575311_-	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed	NA|505aa|up_6|NZ_CP029146.1_3575746_3577261_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|232aa|up_5|NZ_CP029146.1_3577553_3578249_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|334aa|up_4|NZ_CP029146.1_3578380_3579382_+	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit	NA|284aa|up_3|NZ_CP029146.1_3579378_3580230_+	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|286aa|up_2|NZ_CP029146.1_3580237_3581095_+	TIGR01248, drrC, daunorubicin resistance protein C	NA|328aa|up_1|NZ_CP029146.1_3581214_3582198_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|343aa|up_0|NZ_CP029146.1_3582280_3583309_-	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|1952aa|down_0|NZ_CP029146.1_3597336_3603192_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|4032aa|down_1|NZ_CP029146.1_3603728_3615824_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|2467aa|down_2|NZ_CP029146.1_3616040_3623441_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|9848aa|down_3|NZ_CP029146.1_3623647_3653191_-	PRK12316, PRK12316, peptide synthase; Provisional	NA|6939aa|down_4|NZ_CP029146.1_3653334_3674151_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|116aa|down_5|NZ_CP029146.1_3674439_3674787_-	NA	NA|654aa|down_6|NZ_CP029146.1_3674864_3676826_-	PRK03584, PRK03584, acetoacetate--CoA ligase	NA|281aa|down_7|NZ_CP029146.1_3676822_3677665_-	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|279aa|down_8|NZ_CP029146.1_3677824_3678661_-	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|162aa|down_9|NZ_CP029146.1_3678657_3679143_-	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes
