The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP028141	Vibrio parahaemolyticus strain R14 chromosome 1, complete sequence	3477001	231642	319707	3477001	transposase,integrase,tRNA,protease	uncultured_Mediterranean_phage(20.0%)	59	257174:257190	284695:284711
WP_005477377.1|231642_232623_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005496590.1|232786_233002_+	envelope stress response protein PspG	NA	NA	NA	NA	NA
WP_005455819.1|233103_233763_+	TIGR04219 family outer membrane beta-barrel protein	NA	NA	NA	NA	NA
WP_005455817.1|233914_234145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029864061.1|234262_236134_+	assimilatory sulfite reductase (NADPH) flavoprotein subunit	NA	NA	NA	NA	NA
WP_015297344.1|236133_237870_+	assimilatory sulfite reductase (NADPH) hemoprotein subunit	NA	NA	NA	NA	NA
WP_005477371.1|237862_238642_+	phosphoadenylyl-sulfate reductase	NA	NA	NA	NA	NA
WP_079399815.1|250067_250220_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_101945907.1|250440_250584_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011106084.1|250929_252264_-	sodium:proton antiporter	NA	A0A2H4J178	uncultured_Caudovirales_phage	38.1	2.8e-40
WP_057619617.1|252455_256136_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	74.6	5.2e-20
WP_005480997.1|256259_257612_-	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
257174:257190	attL	GCACTTCACGAATATCA	NA	NA	NA	NA
WP_057619616.1|258219_259341_+	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_053302082.1|259474_261253_-	O-antigen ligase C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_108745155.1|261320_264143_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.4	0.0e+00
WP_005466627.1|264280_265153_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	46.4	3.8e-62
WP_108744711.1|265410_266055_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005466625.1|266333_266864_+	single-stranded DNA-binding protein	NA	A0A2I7RHA9	Vibrio_phage	89.2	5.9e-58
WP_108744712.1|267049_268366_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_108744713.1|268378_269932_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_108744714.1|269924_272306_+|integrase	integrase	integrase	NA	NA	NA	NA
WP_108744715.1|272308_272725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_108744716.1|272735_273221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_108744717.1|273217_275413_+	AAA family ATPase	NA	A0A0K2FLP8	Brevibacillus_phage	26.5	3.7e-37
WP_108744718.1|275829_277476_+	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_162597335.1|277495_277660_-	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_108744720.1|277641_277887_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011106082.1|279480_281490_+	RNase E specificity factor CsrD	NA	NA	NA	NA	NA
WP_025547506.1|281501_282947_+	MSHA biogenesis protein MshI	NA	NA	NA	NA	NA
WP_005497276.1|282943_283594_+	type II secretion system protein M	NA	NA	NA	NA	NA
WP_005481006.1|283586_283916_+	MSHA biogenesis protein MshK	NA	NA	NA	NA	NA
WP_005456314.1|283936_285580_+	pilus (MSHA type) biogenesis protein MshL	NA	NA	NA	NA	NA
284695:284711	attR	TGATATTCGTGAAGTGC	NA	NA	NA	NA
WP_108744721.1|285623_286469_+	ExeA family protein	NA	NA	NA	NA	NA
WP_025558463.1|286465_287542_+	MSHA biogenesis protein MshN	NA	NA	NA	NA	NA
WP_015297335.1|287538_289263_+	type II/IV secretion system protein	NA	NA	NA	NA	NA
WP_021484749.1|289271_290495_+	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_005456302.1|290498_290960_+	MSHA biogenesis protein MshF	NA	NA	NA	NA	NA
WP_005381181.1|291254_291722_+	type II secretion system protein	NA	NA	NA	NA	NA
WP_054395004.1|291793_292027_+	MSHA biogenesis protein MshA	NA	NA	NA	NA	NA
WP_021453808.1|292142_292628_+	type II secretion system protein	NA	NA	NA	NA	NA
WP_054395011.1|292624_293191_+	type II secretion system protein	NA	NA	NA	NA	NA
WP_108744722.1|293191_293905_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_054395003.1|293894_294338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_054395002.1|294337_298348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005381144.1|298499_299543_+	rod shape-determining protein	NA	F2Y0P3	Organic_Lake_phycodnavirus	20.3	2.7e-06
WP_005461822.1|299680_300577_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_005461823.1|300566_301055_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_005461824.1|301059_301629_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_005461826.1|301647_303117_+	ribonuclease G	NA	NA	NA	NA	NA
WP_025545974.1|303128_307007_+	TIGR02099 family protein	NA	NA	NA	NA	NA
WP_025517838.1|307041_307863_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
WP_020835343.1|307874_309320_+|protease	metalloprotease TldD	protease	NA	NA	NA	NA
WP_005461836.1|309390_310767_-	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	44.4	1.3e-104
WP_025545975.1|311329_314239_+	RNA polymerase-associated protein RapA	NA	A0A1B1IUI1	uncultured_Mediterranean_phage	36.1	4.9e-21
WP_025545977.1|314308_315574_-	Nramp family divalent metal transporter	NA	NA	NA	NA	NA
WP_021484738.1|315903_316656_+|tRNA	bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	tRNA	NA	NA	NA	NA
WP_025545978.1|316690_317653_+	D-2-hydroxyacid dehydrogenase	NA	M1HMI7	Paramecium_bursaria_Chlorella_virus	29.9	1.1e-27
WP_005457057.1|317725_318253_-	ribosome-associated protein	NA	NA	NA	NA	NA
WP_005459755.1|318363_319707_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
>prophage 2
NZ_CP028141	Vibrio parahaemolyticus strain R14 chromosome 1, complete sequence	3477001	447926	462597	3477001	tRNA	uncultured_Mediterranean_phage(20.0%)	13	NA	NA
WP_005455581.1|447926_449567_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	52.4	4.2e-155
WP_005455579.1|449645_450947_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	59.2	4.2e-134
WP_005455577.1|451360_451642_+	cell division protein FtsB	NA	NA	NA	NA	NA
WP_025546668.1|451643_452348_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	A0A2H4UTB4	Bodo_saltans_virus	24.3	4.5e-05
WP_005380896.1|452365_452842_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_024702352.1|452888_453932_+|tRNA	tRNA pseudouridine(13) synthase TruD	tRNA	NA	NA	NA	NA
WP_005478553.1|453931_454708_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.4	5.0e-66
WP_005455562.1|454707_455334_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	1.3e-35
WP_025546666.1|455348_456272_+	peptidoglycan DD-metalloendopeptidase family protein	NA	D7RWE0	Brochothrix_phage	35.2	4.1e-06
WP_162597300.1|456352_457342_+	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	35.2	6.9e-36
WP_025546664.1|457420_459982_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.7	1.3e-33
WP_021450025.1|460066_460549_+	nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	48.7	2.9e-27
WP_108744746.1|461550_462597_+	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	60.3	4.8e-112
>prophage 3
NZ_CP028141	Vibrio parahaemolyticus strain R14 chromosome 1, complete sequence	3477001	2478592	2485294	3477001		Staphylococcus_phage(50.0%)	7	NA	NA
WP_005440184.1|2478592_2479063_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	49.3	1.7e-32
WP_057619201.1|2479232_2480342_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.6	8.8e-64
WP_005483039.1|2480511_2481165_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	37.5	1.6e-33
WP_025548687.1|2481177_2482302_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	36.0	2.4e-48
WP_005482986.1|2482309_2482759_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_017448803.1|2482886_2484137_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.9	2.1e-98
WP_005483011.1|2484154_2485294_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	41.7	1.3e-62
