assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003074015.1_ASM307401v1	NZ_CP029137	Klebsiella pneumoniae strain AR376 chromosome, complete genome	1	1715756-1715914	1	PILER-CR	no		DEDDh,cas3,WYL,RT,csa3,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Orphan	GTAGGCCGGGCAAGCGCAGCGCCGCCCGGCAAAGAGTGCAGG	42	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,WYL,RT,csa3,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA,NA	NA|312aa|up_9|NZ_CP029137.1_1701633_1702569_+	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]	NA|208aa|up_8|NZ_CP029137.1_1702620_1703244_-	PRK10251, PRK10251, enterobactin synthase subunit EntD	NA|743aa|up_7|NZ_CP029137.1_1703310_1705539_-	PRK13524, PRK13524, FepA family TonB-dependent siderophore receptor	NA|403aa|up_6|NZ_CP029137.1_1705798_1707007_+	PRK10439, PRK10439, enterobactin/ferric enterobactin esterase; Provisional	NA|68aa|up_5|NZ_CP029137.1_1707034_1707238_+	COG3251, COG3251, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1294aa|up_4|NZ_CP029137.1_1707248_1711130_+	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF	NA|265aa|up_3|NZ_CP029137.1_1711194_1711989_-	PRK10253, PRK10253, iron-enterobactin ABC transporter ATP-binding protein	NA|331aa|up_2|NZ_CP029137.1_1711985_1712978_-	PRK10440, PRK10440, iron-enterobactin ABC transporter permease	NA|336aa|up_1|NZ_CP029137.1_1712974_1713982_-	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease	NA|414aa|up_0|NZ_CP029137.1_1714094_1715336_+	PRK10489, PRK10489, enterobactin transporter EntS	NA|320aa|down_0|NZ_CP029137.1_1715945_1716905_-	PRK10957, PRK10957, iron-enterobactin transporter periplasmic binding protein; Provisional	NA|392aa|down_1|NZ_CP029137.1_1717093_1718269_+	PRK15016, PRK15016, isochorismate synthase EntC; Provisional	NA|536aa|down_2|NZ_CP029137.1_1718278_1719886_+	PRK10946, entE, (2,3-dihydroxybenzoyl)adenylate synthase	NA|284aa|down_3|NZ_CP029137.1_1719899_1720751_+	COG1535, EntB, Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|252aa|down_4|NZ_CP029137.1_1720750_1721506_+	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	NA|138aa|down_5|NZ_CP029137.1_1721506_1721920_+	PRK10254, PRK10254, proofreading thioesterase EntH	NA|702aa|down_6|NZ_CP029137.1_1722276_1724382_+	PRK15015, PRK15015, carbon starvation protein CstA	NA|66aa|down_7|NZ_CP029137.1_1724486_1724684_+	COG2879, COG2879, Uncharacterized small protein [Function unknown]	NA|101aa|down_8|NZ_CP029137.1_1725059_1725362_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|248aa|down_9|NZ_CP029137.1_1725545_1726289_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
GCF_003074015.1_ASM307401v1	NZ_CP029137	Klebsiella pneumoniae strain AR376 chromosome, complete genome	2	3345685-3346270	1,1,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3	DEDDh,cas3,WYL,RT,csa3,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Type I-E	AGAAACACCCCCACGTGCGTGGGGAAGAC,AGAAACACCCCCACGTGCGTGGGGAAGACN,GAAACACCCCCACGTGCGTGGGGAAGAC	29,30,28	2	2	3345783-3345814|3345783-3345815	NZ_CP029136.1_141266-141235|NZ_CP029136.1_141266-141234	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	9,9,8	9	TypeI-E	DEDDh,cas3,WYL,RT,csa3,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA,NA	NA|77aa|up_9|NZ_CP029137.1_3336435_3336666_-	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]	NA|246aa|up_8|NZ_CP029137.1_3336662_3337400_-	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|220aa|up_7|NZ_CP029137.1_3337449_3338109_-	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|208aa|up_6|NZ_CP029137.1_3338105_3338729_-	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|447aa|up_5|NZ_CP029137.1_3338812_3340153_-	pfam00034, Cytochrom_C, Cytochrome c	NA|595aa|up_4|NZ_CP029137.1_3340163_3341948_-	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|252aa|up_3|NZ_CP029137.1_3341950_3342706_-	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|124aa|up_2|NZ_CP029137.1_3343207_3343579_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|228aa|up_1|NZ_CP029137.1_3343639_3344323_-	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|372aa|up_0|NZ_CP029137.1_3344333_3345449_-	PHA02053, PHA02053, hypothetical protein	cas2|96aa|down_0|NZ_CP029137.1_3346317_3346605_-	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	cas1|292aa|down_1|NZ_CP029137.1_3346582_3347458_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|232aa|down_2|NZ_CP029137.1_3347457_3348153_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|345aa|down_3|NZ_CP029137.1_3348186_3349221_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|216aa|down_4|NZ_CP029137.1_3349250_3349898_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|189aa|down_5|NZ_CP029137.1_3349890_3350457_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|down_6|NZ_CP029137.1_3350468_3351992_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|872aa|down_7|NZ_CP029137.1_3351995_3354611_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|357aa|down_8|NZ_CP029137.1_3355853_3356924_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|590aa|down_9|NZ_CP029137.1_3356916_3358686_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
GCF_003074015.1_ASM307401v1	NZ_CP029137	Klebsiella pneumoniae strain AR376 chromosome, complete genome	3	3355023-3355601	2,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3	DEDDh,cas3,WYL,RT,csa3,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Type I-E	AGAAACACCCCCACGCGTGTGGGGAAGAC,GAAACACCCCCACGCGTGTGGGGAAGAC,GAAACACCCCCACGCGTGTGGGGAAGAC	29,28,28	2	2	3355113-3355144|3355113-3355145	NZ_CP029136.1_75054-75085|NZ_CP029136.1_75054-75086	I-E,II-B:I-E,II-B:I-E,II-B	9,9,6	9	TypeI-E	DEDDh,cas3,WYL,RT,csa3,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA,NA|79aa|down_3|NZ_CP029137.1_3359866_3360103_-	NA|228aa|up_9|NZ_CP029137.1_3343639_3344323_-	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|372aa|up_8|NZ_CP029137.1_3344333_3345449_-	PHA02053, PHA02053, hypothetical protein	cas2|96aa|up_7|NZ_CP029137.1_3346317_3346605_-	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	cas1|292aa|up_6|NZ_CP029137.1_3346582_3347458_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|232aa|up_5|NZ_CP029137.1_3347457_3348153_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|345aa|up_4|NZ_CP029137.1_3348186_3349221_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|216aa|up_3|NZ_CP029137.1_3349250_3349898_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|189aa|up_2|NZ_CP029137.1_3349890_3350457_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|up_1|NZ_CP029137.1_3350468_3351992_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|872aa|up_0|NZ_CP029137.1_3351995_3354611_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|357aa|down_0|NZ_CP029137.1_3355853_3356924_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|590aa|down_1|NZ_CP029137.1_3356916_3358686_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|363aa|down_2|NZ_CP029137.1_3358759_3359848_-	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|79aa|down_3|NZ_CP029137.1_3359866_3360103_-	NA	NA|360aa|down_4|NZ_CP029137.1_3360150_3361230_+	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|717aa|down_5|NZ_CP029137.1_3361476_3363627_+	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|54aa|down_6|NZ_CP029137.1_3363669_3363831_-	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|400aa|down_7|NZ_CP029137.1_3365122_3366322_+	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|145aa|down_8|NZ_CP029137.1_3366437_3366872_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|411aa|down_9|NZ_CP029137.1_3367437_3368670_+	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM
GCF_003074015.1_ASM307401v1	NZ_CP029137	Klebsiella pneumoniae strain AR376 chromosome, complete genome	4	4538862-4538990	3	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,WYL,RT,csa3,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Unclear	TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAAC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,RT,csa3,DinG,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA,NA	NA|428aa|up_9|NZ_CP029137.1_4528610_4529894_+	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase	NA|467aa|up_8|NZ_CP029137.1_4530029_4531430_+	PRK10197, PRK10197, GABA permease	NA|231aa|up_7|NZ_CP029137.1_4531475_4532168_+	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|133aa|up_6|NZ_CP029137.1_4532253_4532652_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_5|NZ_CP029137.1_4532709_4533954_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_4|NZ_CP029137.1_4534059_4534518_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_3|NZ_CP029137.1_4534775_4536233_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|151aa|up_2|NZ_CP029137.1_4536275_4536728_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_1|NZ_CP029137.1_4536730_4537786_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|287aa|up_0|NZ_CP029137.1_4537945_4538806_+	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|72aa|down_0|NZ_CP029137.1_4539028_4539244_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|408aa|down_1|NZ_CP029137.1_4539246_4540470_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_2|NZ_CP029137.1_4540482_4541079_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|213aa|down_3|NZ_CP029137.1_4541085_4541724_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|265aa|down_4|NZ_CP029137.1_4541716_4542511_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|413aa|down_5|NZ_CP029137.1_4542503_4543742_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|448aa|down_6|NZ_CP029137.1_4543745_4545089_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|247aa|down_7|NZ_CP029137.1_4545500_4546241_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_8|NZ_CP029137.1_4546211_4546979_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|194aa|down_9|NZ_CP029137.1_4547053_4547635_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase
