assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003073935.1_ASM307393v1	NZ_CP029133	Proteus mirabilis strain AR379 chromosome, complete genome	1	502826-502968	1	CRISPRCasFinder	no		csa3,cas3,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	Orphan	CCACCTGTAAAATTGATATCACC	23	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	NA,NA|68aa|down_0|NZ_CP029133.1_504679_504883_-,NA|143aa|down_6|NZ_CP029133.1_511579_512008_-,NA|74aa|down_7|NZ_CP029133.1_512075_512297_-	NA|251aa|up_9|NZ_CP029133.1_477695_478448_-	PRK05287, PRK05287, cell division protein ZapD	NA|205aa|up_8|NZ_CP029133.1_478450_479065_-	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|400aa|up_7|NZ_CP029133.1_479342_480542_-	PRK10573, PRK10573, protein transport protein HofC	NA|368aa|up_6|NZ_CP029133.1_480538_481642_-	PRK10436, PRK10436, hypothetical protein; Provisional	NA|148aa|up_5|NZ_CP029133.1_481740_482184_-	PRK10574, PRK10574, putative major pilin subunit; Provisional	NA|181aa|up_4|NZ_CP029133.1_482394_482937_+	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|257aa|up_3|NZ_CP029133.1_483263_484034_+	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|889aa|up_2|NZ_CP029133.1_484197_486864_+	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|624aa|up_1|NZ_CP029133.1_486876_488748_+	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|476aa|up_0|NZ_CP029133.1_488949_490377_+	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|68aa|down_0|NZ_CP029133.1_504679_504883_-	NA	NA|866aa|down_1|NZ_CP029133.1_505703_508301_+	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|124aa|down_2|NZ_CP029133.1_508471_508843_+	PRK05248, PRK05248, hypothetical protein; Provisional	NA|287aa|down_3|NZ_CP029133.1_508934_509795_+	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|208aa|down_4|NZ_CP029133.1_509963_510587_+	PRK09304, PRK09304, arginine exporter ArgO	NA|245aa|down_5|NZ_CP029133.1_510677_511412_+	PRK11087, PRK11087, oxidative stress defense protein; Provisional	NA|143aa|down_6|NZ_CP029133.1_511579_512008_-	NA	NA|74aa|down_7|NZ_CP029133.1_512075_512297_-	NA	NA|300aa|down_8|NZ_CP029133.1_512499_513399_-	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|219aa|down_9|NZ_CP029133.1_513559_514216_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA
GCF_003073935.1_ASM307393v1	NZ_CP029133	Proteus mirabilis strain AR379 chromosome, complete genome	2	812918-813130	1,1,2	CRT,PILER-CR,CRISPRCasFinder	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,cas3,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	Type I-E	TGTGTTCCCCGTATGCACGGGGATGAACCG,TGTGTTCCCCGTATGCACGGGGATGAACCG,GTGTTCCCCGTATGCACGGGGATGAACC	30,30,28	3	3	812948-812978|812949-812979|812947-812979	NZ_CP029133.1_3406119-3406149|NZ_CP029133.1_3406119-3406149|NZ_CP029133.1_3406118-3406150	I-E:I-E:I-E	3,2,3	3	TypeI-E	csa3,cas3,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	NA,NA	NA|164aa|up_9|NZ_CP029133.1_804405_804897_+	PRK10845, PRK10845, colicin V production protein; Provisional	NA|506aa|up_8|NZ_CP029133.1_804927_806445_+	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional	NA|194aa|up_7|NZ_CP029133.1_806566_807148_+	PRK06029, PRK06029, UbiX family flavin prenyltransferase	NA|302aa|up_6|NZ_CP029133.1_807167_808073_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|205aa|up_5|NZ_CP029133.1_808137_808752_-	PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase; Provisional	NA|181aa|up_4|NZ_CP029133.1_808948_809491_+	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional	NA|349aa|up_3|NZ_CP029133.1_809487_810534_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|148aa|up_2|NZ_CP029133.1_810760_811204_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|96aa|up_1|NZ_CP029133.1_811233_811521_+	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|419aa|up_0|NZ_CP029133.1_811531_812788_+	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	cas8e|533aa|down_0|NZ_CP029133.1_816064_817663_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|196aa|down_1|NZ_CP029133.1_817649_818237_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|345aa|down_2|NZ_CP029133.1_818267_819302_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|246aa|down_3|NZ_CP029133.1_819314_820052_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|226aa|down_4|NZ_CP029133.1_820051_820729_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|307aa|down_5|NZ_CP029133.1_820729_821650_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|99aa|down_6|NZ_CP029133.1_821652_821949_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|408aa|down_7|NZ_CP029133.1_822509_823733_+	PRK13340, PRK13340, alanine racemase; Reviewed	NA|800aa|down_8|NZ_CP029133.1_823810_826210_-	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|48aa|down_9|NZ_CP029133.1_826447_826591_-	pfam01848, HOK_GEF, Hok/gef family
GCF_003073935.1_ASM307393v1	NZ_CP029133	Proteus mirabilis strain AR379 chromosome, complete genome	3	822008-822341	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	csa3,cas3,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	Type I-E	GTGTTCCCCGTGTATACGGGGATGAACCG,GTGTTCCCCGTGTATACGGGGATGAACCG,GTGTTCCCCGTGTATACGGGGATGAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,5,5	5	TypeI-E	csa3,cas3,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	NA,NA	NA|148aa|up_9|NZ_CP029133.1_810760_811204_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|96aa|up_8|NZ_CP029133.1_811233_811521_+	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|419aa|up_7|NZ_CP029133.1_811531_812788_+	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed	cas8e|533aa|up_6|NZ_CP029133.1_816064_817663_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|196aa|up_5|NZ_CP029133.1_817649_818237_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|345aa|up_4|NZ_CP029133.1_818267_819302_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|246aa|up_3|NZ_CP029133.1_819314_820052_+	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|226aa|up_2|NZ_CP029133.1_820051_820729_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|307aa|up_1|NZ_CP029133.1_820729_821650_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|99aa|up_0|NZ_CP029133.1_821652_821949_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|408aa|down_0|NZ_CP029133.1_822509_823733_+	PRK13340, PRK13340, alanine racemase; Reviewed	NA|800aa|down_1|NZ_CP029133.1_823810_826210_-	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|48aa|down_2|NZ_CP029133.1_826447_826591_-	pfam01848, HOK_GEF, Hok/gef family	NA|48aa|down_3|NZ_CP029133.1_826987_827131_-	pfam01848, HOK_GEF, Hok/gef family	NA|48aa|down_4|NZ_CP029133.1_827527_827671_-	pfam01848, HOK_GEF, Hok/gef family	NA|715aa|down_5|NZ_CP029133.1_828007_830152_-	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|401aa|down_6|NZ_CP029133.1_830229_831432_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|152aa|down_7|NZ_CP029133.1_831823_832279_+	PRK01816, PRK01816, hypothetical protein; Provisional	NA|165aa|down_8|NZ_CP029133.1_832419_832914_+	PRK05445, PRK05445, YfbU family protein	NA|221aa|down_9|NZ_CP029133.1_832948_833611_+	PRK11587, PRK11587, putative phosphatase; Provisional
GCF_003073935.1_ASM307393v1	NZ_CP029129	Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence	1	11328-11440	1	CRISPRCasFinder	no			Orphan	ATATCGGGATTTACACACACAGT	23	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	NA|68aa|up_3|NZ_CP029129.1_9184_9388_+,NA|135aa|up_1|NZ_CP029129.1_9933_10338_-,NA	NA|489aa|up_9|NZ_CP029129.1_4248_5715_+	pfam01024, Colicin, Colicin pore forming domain	NA|173aa|up_8|NZ_CP029129.1_5794_6313_-	pfam03857, Colicin_im, Colicin immunity protein	NA|101aa|up_7|NZ_CP029129.1_6453_6756_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|88aa|up_6|NZ_CP029129.1_6764_7028_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|218aa|up_5|NZ_CP029129.1_7645_8299_+	cd02042, ParAB_family, partition proteins ParAB family	NA|94aa|up_4|NZ_CP029129.1_8542_8824_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|68aa|up_3|NZ_CP029129.1_9184_9388_+	NA	NA|122aa|up_2|NZ_CP029129.1_9472_9838_-	pfam10881, DUF2726, Protein of unknown function (DUF2726)	NA|135aa|up_1|NZ_CP029129.1_9933_10338_-	NA	NA|319aa|up_0|NZ_CP029129.1_10347_11304_-	pfam10134, RPA, Replication initiator protein A	NA|51aa|down_0|NZ_CP029129.1_12255_12408_+	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
GCF_003073935.1_ASM307393v1	NZ_CP029129	Proteus mirabilis strain AR379 plasmid unnamed1, complete sequence	2	11519-11639	2	CRISPRCasFinder	no			Orphan	ATATCGGGATTTACACACACAGT	23	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,c2c9_V-U4,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT	NA|68aa|up_3|NZ_CP029129.1_9184_9388_+,NA|135aa|up_1|NZ_CP029129.1_9933_10338_-,NA	NA|489aa|up_9|NZ_CP029129.1_4248_5715_+	pfam01024, Colicin, Colicin pore forming domain	NA|173aa|up_8|NZ_CP029129.1_5794_6313_-	pfam03857, Colicin_im, Colicin immunity protein	NA|101aa|up_7|NZ_CP029129.1_6453_6756_-	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|88aa|up_6|NZ_CP029129.1_6764_7028_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|218aa|up_5|NZ_CP029129.1_7645_8299_+	cd02042, ParAB_family, partition proteins ParAB family	NA|94aa|up_4|NZ_CP029129.1_8542_8824_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|68aa|up_3|NZ_CP029129.1_9184_9388_+	NA	NA|122aa|up_2|NZ_CP029129.1_9472_9838_-	pfam10881, DUF2726, Protein of unknown function (DUF2726)	NA|135aa|up_1|NZ_CP029129.1_9933_10338_-	NA	NA|319aa|up_0|NZ_CP029129.1_10347_11304_-	pfam10134, RPA, Replication initiator protein A	NA|51aa|down_0|NZ_CP029129.1_12255_12408_+	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
