assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003073755.1_ASM307375v1	NZ_CP029084	Staphylococcus aureus strain AR464 chromosome, complete genome	1	180547-180685	1	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	TTTTTAATATTTTTCTTTTGAGTTACTCGAAAATTTTTCTCTTTACTCGAA	51	1	1	180598-180634	NZ_CP029084.1_180509-180545	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|93aa|up_7|NZ_CP029084.1_172585_172864_+,NA|67aa|up_1|NZ_CP029084.1_179220_179421_+,NA|61aa|up_0|NZ_CP029084.1_179402_179585_-,NA	NA|807aa|up_9|NZ_CP029084.1_168237_170658_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_8|NZ_CP029084.1_170856_171711_-	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]	NA|93aa|up_7|NZ_CP029084.1_172585_172864_+	NA	NA|506aa|up_6|NZ_CP029084.1_172873_174391_+	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|272aa|up_5|NZ_CP029084.1_174615_175431_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|NZ_CP029084.1_175725_176151_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|NZ_CP029084.1_176526_177231_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|NZ_CP029084.1_177267_178932_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|67aa|up_1|NZ_CP029084.1_179220_179421_+	NA	NA|61aa|up_0|NZ_CP029084.1_179402_179585_-	NA	NA|133aa|down_0|NZ_CP029084.1_182461_182860_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_1|NZ_CP029084.1_182873_183311_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|268aa|down_2|NZ_CP029084.1_183550_184354_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_3|NZ_CP029084.1_184358_185165_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_4|NZ_CP029084.1_185154_186015_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_5|NZ_CP029084.1_186011_186821_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|123aa|down_6|NZ_CP029084.1_187358_187727_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_7|NZ_CP029084.1_187743_188688_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|130aa|down_8|NZ_CP029084.1_188762_189152_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|122aa|down_9|NZ_CP029084.1_189175_189541_-	PRK05179, rpsM, 30S ribosomal protein S13; Validated
GCF_003073755.1_ASM307375v1	NZ_CP029084	Staphylococcus aureus strain AR464 chromosome, complete genome	2	371702-371795	2	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	TTCTTCAAATTTATTTGTTAGAAAGG	26	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|35aa|up_2|NZ_CP029084.1_369423_369528_+,NA|35aa|down_0|NZ_CP029084.1_371989_372094_-	NA|200aa|up_9|NZ_CP029084.1_362900_363500_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NZ_CP029084.1_363518_363881_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NZ_CP029084.1_364135_365386_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NZ_CP029084.1_365482_366214_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NZ_CP029084.1_366210_366930_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NZ_CP029084.1_366910_367690_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NZ_CP029084.1_367810_369250_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NZ_CP029084.1_369423_369528_+	NA	NA|229aa|up_1|NZ_CP029084.1_369681_370368_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NZ_CP029084.1_370694_371561_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|35aa|down_0|NZ_CP029084.1_371989_372094_-	NA	NA|438aa|down_1|NZ_CP029084.1_372188_373502_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NZ_CP029084.1_374037_374967_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NZ_CP029084.1_375534_376482_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NZ_CP029084.1_376483_377461_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NZ_CP029084.1_377519_377987_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NZ_CP029084.1_377997_378690_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NZ_CP029084.1_378700_379816_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NZ_CP029084.1_379793_380801_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NZ_CP029084.1_380802_382161_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
GCF_003073755.1_ASM307375v1	NZ_CP029084	Staphylococcus aureus strain AR464 chromosome, complete genome	3	1408509-1408610	3	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CATAAGAGCCCCTAATTAATAAATTAAAAGGGG	33	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA|39aa|up_2|NZ_CP029084.1_1406447_1406564_+,NA|230aa|down_2|NZ_CP029084.1_1410431_1411121_-,NA|100aa|down_5|NZ_CP029084.1_1412285_1412585_+	NA|336aa|up_9|NZ_CP029084.1_1398229_1399237_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_8|NZ_CP029084.1_1399822_1400620_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_7|NZ_CP029084.1_1400980_1401625_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_6|NZ_CP029084.1_1402321_1404472_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|120aa|up_5|NZ_CP029084.1_1404617_1404977_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|NZ_CP029084.1_1405166_1405883_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|NZ_CP029084.1_1405882_1406356_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|NZ_CP029084.1_1406447_1406564_+	NA	NA|215aa|up_1|NZ_CP029084.1_1406708_1407353_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|NZ_CP029084.1_1407468_1408335_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|NZ_CP029084.1_1408627_1409848_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|NZ_CP029084.1_1409844_1410333_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|NZ_CP029084.1_1410431_1411121_-	NA	NA|148aa|down_3|NZ_CP029084.1_1411248_1411692_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|130aa|down_4|NZ_CP029084.1_1411758_1412148_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|100aa|down_5|NZ_CP029084.1_1412285_1412585_+	NA	NA|181aa|down_6|NZ_CP029084.1_1412664_1413207_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|NZ_CP029084.1_1413301_1413868_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|NZ_CP029084.1_1413869_1414328_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|NZ_CP029084.1_1414330_1415014_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCF_003073755.1_ASM307375v1	NZ_CP029084	Staphylococcus aureus strain AR464 chromosome, complete genome	4	1507307-1507390	4	CRISPRCasFinder	no	cas3	csa3,WYL,cas3,DEDDh,DinG	Unclear	GTAAGCTGACTTTACGTTAGCTTCT	25	1	1	1507332-1507365	NZ_CP029084.1_1800396-1800429	NA	1	1	Unclear	csa3,WYL,cas3,DEDDh,DinG	NA,NA	NA|280aa|up_9|NZ_CP029084.1_1494728_1495568_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP029084.1_1495741_1496392_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP029084.1_1496388_1496625_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP029084.1_1496893_1498879_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|943aa|up_5|NZ_CP029084.1_1498886_1501715_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP029084.1_1502091_1503024_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP029084.1_1503029_1503869_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP029084.1_1503876_1504362_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP029084.1_1504369_1505809_+	sd00006, TPR, Tetratricopeptide repeat	NA|312aa|up_0|NZ_CP029084.1_1505875_1506811_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP029084.1_1507638_1508550_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP029084.1_1508546_1509542_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP029084.1_1509652_1510597_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP029084.1_1511159_1511747_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|545aa|down_4|NZ_CP029084.1_1511928_1513563_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|301aa|down_5|NZ_CP029084.1_1514009_1514912_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_6|NZ_CP029084.1_1515614_1516244_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_7|NZ_CP029084.1_1516852_1517866_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_8|NZ_CP029084.1_1517918_1518929_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_9|NZ_CP029084.1_1519067_1520258_+	PRK00073, pgk, phosphoglycerate kinase; Provisional
GCF_003073755.1_ASM307375v1	NZ_CP029084	Staphylococcus aureus strain AR464 chromosome, complete genome	5	1513780-1513859	5	CRISPRCasFinder	no		csa3,WYL,cas3,DEDDh,DinG	Orphan	CAGCTTCTATGTTGGGGCCCCGCC	24	1	6	1513804-1513835|1513804-1513835|1513804-1513835|1513804-1513835|1513804-1513835|1513804-1513835	NZ_CP029084.1_253805-253774|NZ_CP029084.1_253861-253830|NZ_CP029084.1_412376-412345|NZ_CP029084.1_949665-949634|NZ_CP029084.1_1660996-1660965|NZ_CP029084.1_2622991-2622960	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG	NA,NA|153aa|down_8|NZ_CP029084.1_1524433_1524892_+	NA|311aa|up_9|NZ_CP029084.1_1502091_1503024_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_8|NZ_CP029084.1_1503029_1503869_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_7|NZ_CP029084.1_1503876_1504362_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_6|NZ_CP029084.1_1504369_1505809_+	sd00006, TPR, Tetratricopeptide repeat	NA|312aa|up_5|NZ_CP029084.1_1505875_1506811_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|up_4|NZ_CP029084.1_1507638_1508550_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|up_3|NZ_CP029084.1_1508546_1509542_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|up_2|NZ_CP029084.1_1509652_1510597_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|up_1|NZ_CP029084.1_1511159_1511747_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|545aa|up_0|NZ_CP029084.1_1511928_1513563_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|301aa|down_0|NZ_CP029084.1_1514009_1514912_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_1|NZ_CP029084.1_1515614_1516244_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_2|NZ_CP029084.1_1516852_1517866_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_3|NZ_CP029084.1_1517918_1518929_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_4|NZ_CP029084.1_1519067_1520258_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_5|NZ_CP029084.1_1520379_1521141_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|506aa|down_6|NZ_CP029084.1_1521143_1522661_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|435aa|down_7|NZ_CP029084.1_1522790_1524095_+	PRK00077, eno, enolase; Provisional	NA|153aa|down_8|NZ_CP029084.1_1524433_1524892_+	NA	NA|78aa|down_9|NZ_CP029084.1_1524958_1525192_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]
