assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003073715.1_ASM307371v1	NZ_CP029087	Staphylococcus aureus strain AR461 chromosome, complete genome	1	425345-425446	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_8|NZ_CP029087.1_416904_417114_-,NA|128aa|up_6|NZ_CP029087.1_417938_418322_-,NA|33aa|up_0|NZ_CP029087.1_424569_424668_+,NA|221aa|down_1|NZ_CP029087.1_426536_427199_-,NA|179aa|down_7|NZ_CP029087.1_433290_433827_-	NA|84aa|up_9|NZ_CP029087.1_416614_416866_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP029087.1_416904_417114_-	NA	NA|194aa|up_7|NZ_CP029087.1_417291_417873_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP029087.1_417938_418322_-	NA	NA|209aa|up_5|NZ_CP029087.1_418591_419218_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP029087.1_419661_421185_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP029087.1_421200_421770_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP029087.1_422261_423017_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP029087.1_423096_424485_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NZ_CP029087.1_424569_424668_+	NA	NA|319aa|down_0|NZ_CP029087.1_425462_426419_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP029087.1_426536_427199_-	NA	NA|136aa|down_2|NZ_CP029087.1_427341_427749_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP029087.1_428261_428840_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP029087.1_428839_430108_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP029087.1_430145_431612_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP029087.1_431636_433178_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP029087.1_433290_433827_-	NA	NA|235aa|down_8|NZ_CP029087.1_434218_434923_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP029087.1_435321_435594_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_003073715.1_ASM307371v1	NZ_CP029087	Staphylococcus aureus strain AR461 chromosome, complete genome	2	779228-779310	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|69aa|up_9|NZ_CP029087.1_765841_766048_+,NA|34aa|down_1|NZ_CP029087.1_780965_781067_+,NA|52aa|down_8|NZ_CP029087.1_788913_789069_+	NA|69aa|up_9|NZ_CP029087.1_765841_766048_+	NA	NA|237aa|up_8|NZ_CP029087.1_766135_766846_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP029087.1_766829_767834_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP029087.1_768307_770248_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP029087.1_770517_772401_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP029087.1_772412_774194_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP029087.1_774415_775393_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP029087.1_775385_776900_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP029087.1_777139_778198_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP029087.1_778536_779079_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP029087.1_779957_780875_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP029087.1_780965_781067_+	NA	NA|502aa|down_2|NZ_CP029087.1_781144_782650_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP029087.1_782990_783491_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP029087.1_783510_784377_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP029087.1_785177_785576_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP029087.1_785538_787644_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP029087.1_787761_788733_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP029087.1_788913_789069_+	NA	NA|324aa|down_9|NZ_CP029087.1_789107_790079_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_003073715.1_ASM307371v1	NZ_CP029087	Staphylococcus aureus strain AR461 chromosome, complete genome	3	820175-820253	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	2	820199-820229|820199-820229	NZ_CP029087.1_310304-310274|NZ_CP029087.1_310249-310219	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NZ_CP029087.1_811051_811156_+,NA|36aa|up_5|NZ_CP029087.1_812588_812696_+,NA	NA|191aa|up_9|NZ_CP029087.1_807492_808065_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP029087.1_808478_811010_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP029087.1_811051_811156_+	NA	NA|370aa|up_6|NZ_CP029087.1_811324_812435_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP029087.1_812588_812696_+	NA	NA|280aa|up_4|NZ_CP029087.1_812843_813683_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP029087.1_813856_814507_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP029087.1_814503_814740_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP029087.1_815008_816994_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP029087.1_817001_819848_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP029087.1_820511_821444_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP029087.1_821449_822289_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP029087.1_822296_822782_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP029087.1_822789_824229_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP029087.1_824295_825231_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP029087.1_826057_826969_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP029087.1_826965_827961_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP029087.1_828071_829016_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP029087.1_829579_830167_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP029087.1_830409_831312_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_003073715.1_ASM307371v1	NZ_CP029087	Staphylococcus aureus strain AR461 chromosome, complete genome	4	868854-868934	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|38aa|up_1|NZ_CP029087.1_867756_867870_+,NA	NA|206aa|up_9|NZ_CP029087.1_862610_863228_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP029087.1_863382_863877_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP029087.1_864275_864698_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP029087.1_864845_865562_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP029087.1_865644_866184_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP029087.1_866334_866655_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP029087.1_866798_867155_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP029087.1_867312_867693_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP029087.1_867756_867870_+	NA	NA|293aa|up_0|NZ_CP029087.1_867871_868750_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP029087.1_869545_869932_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP029087.1_869924_870221_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP029087.1_870470_871496_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP029087.1_871488_872184_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP029087.1_872201_873023_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP029087.1_873376_873571_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP029087.1_873804_874656_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP029087.1_874983_875745_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP029087.1_875842_877150_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP029087.1_877255_878506_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_003073715.1_ASM307371v1	NZ_CP029087	Staphylococcus aureus strain AR461 chromosome, complete genome	5	1175508-1175594	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	ACAATGCAAGTTGGGGTGGGGCCACAACA	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|56aa|up_5|NZ_CP029087.1_1171255_1171423_+,NA|169aa|up_2|NZ_CP029087.1_1173385_1173892_+,NA|62aa|down_0|NZ_CP029087.1_1175858_1176044_-,NA|78aa|down_1|NZ_CP029087.1_1176665_1176899_-,NA|49aa|down_4|NZ_CP029087.1_1180527_1180674_+,NA|75aa|down_5|NZ_CP029087.1_1180630_1180855_+	NA|272aa|up_9|NZ_CP029087.1_1168181_1168997_+	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|267aa|up_8|NZ_CP029087.1_1169232_1170033_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|196aa|up_7|NZ_CP029087.1_1170044_1170632_+	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|168aa|up_6|NZ_CP029087.1_1170624_1171128_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|56aa|up_5|NZ_CP029087.1_1171255_1171423_+	NA	NA|110aa|up_4|NZ_CP029087.1_1171616_1171946_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|134aa|up_3|NZ_CP029087.1_1172314_1172716_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_2|NZ_CP029087.1_1173385_1173892_+	NA	NA|166aa|up_1|NZ_CP029087.1_1174151_1174649_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_0|NZ_CP029087.1_1174798_1175149_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|down_0|NZ_CP029087.1_1175858_1176044_-	NA	NA|78aa|down_1|NZ_CP029087.1_1176665_1176899_-	NA	NA|440aa|down_2|NZ_CP029087.1_1177417_1178737_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|320aa|down_3|NZ_CP029087.1_1178895_1179855_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|down_4|NZ_CP029087.1_1180527_1180674_+	NA	NA|75aa|down_5|NZ_CP029087.1_1180630_1180855_+	NA	NA|239aa|down_6|NZ_CP029087.1_1181344_1182061_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_7|NZ_CP029087.1_1182168_1182894_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_8|NZ_CP029087.1_1182988_1183714_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_9|NZ_CP029087.1_1184151_1185153_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional
GCF_003073715.1_ASM307371v1	NZ_CP029087	Staphylococcus aureus strain AR461 chromosome, complete genome	6	1747118-1747202	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	1	1747144-1747176	NZ_CP029087.1_1387193-1387161	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NZ_CP029087.1_1736327_1737011_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP029087.1_1737254_1737431_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP029087.1_1737723_1739070_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP029087.1_1739076_1739829_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP029087.1_1739830_1740769_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP029087.1_1740772_1741912_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP029087.1_1742047_1743880_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP029087.1_1743948_1744575_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP029087.1_1744606_1745584_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP029087.1_1745684_1746809_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP029087.1_1747374_1749198_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP029087.1_1749543_1749795_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP029087.1_1749839_1750814_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|NZ_CP029087.1_1750870_1753018_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP029087.1_1753076_1753538_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP029087.1_1753629_1754316_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP029087.1_1754355_1755072_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP029087.1_1755074_1755428_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP029087.1_1755428_1756013_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP029087.1_1756002_1756572_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_003073715.1_ASM307371v1	NZ_CP029087	Staphylococcus aureus strain AR461 chromosome, complete genome	7	1780071-1780218	1	PILER-CR	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CTATGTTGGGGCCCCGTCCCCAACTTCCATTGCCTGT	37	1	2	1780178-1780199|1780178-1780199	NZ_CP029087.1_2178348-2178369|NZ_CP029087.1_2178465-2178486	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA|49aa|down_3|NZ_CP029087.1_1784208_1784355_-,NA|43aa|down_8|NZ_CP029087.1_1787391_1787520_-	NA|159aa|up_9|NZ_CP029087.1_1768236_1768713_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|208aa|up_8|NZ_CP029087.1_1768740_1769364_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_7|NZ_CP029087.1_1769363_1770632_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_6|NZ_CP029087.1_1770643_1771567_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_5|NZ_CP029087.1_1771569_1772208_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_4|NZ_CP029087.1_1772492_1772801_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_3|NZ_CP029087.1_1772815_1773244_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|877aa|up_2|NZ_CP029087.1_1773570_1776201_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NZ_CP029087.1_1776543_1779021_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NZ_CP029087.1_1779022_1779691_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NZ_CP029087.1_1780385_1781504_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NZ_CP029087.1_1781504_1782647_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NZ_CP029087.1_1782958_1783972_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NZ_CP029087.1_1784208_1784355_-	NA	NA|61aa|down_4|NZ_CP029087.1_1784394_1784577_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NZ_CP029087.1_1784676_1785099_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NZ_CP029087.1_1785183_1786458_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NZ_CP029087.1_1786618_1787392_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NZ_CP029087.1_1787391_1787520_-	NA	NA|589aa|down_9|NZ_CP029087.1_1787852_1789619_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_003073715.1_ASM307371v1	NZ_CP029087	Staphylococcus aureus strain AR461 chromosome, complete genome	8	2178379-2178460	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	GGCCCCCACCCCAACTTACATTGT	24	1	5	2178403-2178436|2178403-2178436|2178403-2178436|2178403-2178436|2178403-2178436	NZ_CP029087.1_820174-820207|NZ_CP029087.1_1175507-1175474|NZ_CP029087.1_1872409-1872376|NZ_CP029087.1_1391534-1391567|NZ_CP029087.1_2868365-2868398	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|61aa|up_5|NZ_CP029087.1_2171084_2171267_+,NA	NA|81aa|up_9|NZ_CP029087.1_2168623_2168866_-	pfam05339, DUF739, Protein of unknown function (DUF739)	NA|239aa|up_8|NZ_CP029087.1_2169029_2169746_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|285aa|up_7|NZ_CP029087.1_2169757_2170612_+	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|62aa|up_6|NZ_CP029087.1_2170828_2171014_+	pfam00815, Histidinol_dh, Histidinol dehydrogenase	NA|61aa|up_5|NZ_CP029087.1_2171084_2171267_+	NA	NA|238aa|up_4|NZ_CP029087.1_2171345_2172059_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|346aa|up_3|NZ_CP029087.1_2172249_2173287_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NZ_CP029087.1_2174405_2175422_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP029087.1_2175443_2176499_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP029087.1_2176934_2178158_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP029087.1_2178601_2179909_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|539aa|down_1|NZ_CP029087.1_2180448_2182065_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NZ_CP029087.1_2182140_2182425_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NZ_CP029087.1_2182599_2183343_+	pfam02517, Abi, CAAX protease self-immunity	NA|420aa|down_4|NZ_CP029087.1_2183367_2184627_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NZ_CP029087.1_2184823_2185450_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NZ_CP029087.1_2185810_2186596_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NZ_CP029087.1_2187195_2187330_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|NZ_CP029087.1_2187565_2188129_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|48aa|down_9|NZ_CP029087.1_2188131_2188275_+	smart00794, AgrD, Staphylococcal AgrD protein
GCF_003073715.1_ASM307371v1	NZ_CP029087	Staphylococcus aureus strain AR461 chromosome, complete genome	9	2307637-2307717	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_5|NZ_CP029087.1_2302511_2302742_-,NA|364aa|up_0|NZ_CP029087.1_2306528_2307620_+,NA|35aa|down_0|NZ_CP029087.1_2308052_2308157_-,NA|53aa|down_1|NZ_CP029087.1_2308836_2308995_+	NA|237aa|up_9|NZ_CP029087.1_2298122_2298833_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP029087.1_2298953_2299397_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP029087.1_2299596_2300010_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP029087.1_2300466_2301840_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP029087.1_2302511_2302742_-	NA	NA|313aa|up_4|NZ_CP029087.1_2302772_2303711_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP029087.1_2304146_2304812_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP029087.1_2304963_2305284_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP029087.1_2305285_2306263_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP029087.1_2306528_2307620_+	NA	NA|35aa|down_0|NZ_CP029087.1_2308052_2308157_-	NA	NA|53aa|down_1|NZ_CP029087.1_2308836_2308995_+	NA	NA|286aa|down_2|NZ_CP029087.1_2309652_2310510_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP029087.1_2310577_2311360_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP029087.1_2311592_2313398_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP029087.1_2314078_2315617_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP029087.1_2315651_2317784_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP029087.1_2317795_2318230_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP029087.1_2318229_2319336_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NZ_CP029087.1_2319654_2327100_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_003073715.1_ASM307371v1	NZ_CP029087	Staphylococcus aureus strain AR461 chromosome, complete genome	10	2319959-2320044	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|364aa|up_9|NZ_CP029087.1_2306528_2307620_+,NA|35aa|up_8|NZ_CP029087.1_2308052_2308157_-,NA|53aa|up_7|NZ_CP029087.1_2308836_2308995_+,NA	NA|364aa|up_9|NZ_CP029087.1_2306528_2307620_+	NA	NA|35aa|up_8|NZ_CP029087.1_2308052_2308157_-	NA	NA|53aa|up_7|NZ_CP029087.1_2308836_2308995_+	NA	NA|286aa|up_6|NZ_CP029087.1_2309652_2310510_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP029087.1_2310577_2311360_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP029087.1_2311592_2313398_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP029087.1_2314078_2315617_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP029087.1_2315651_2317784_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP029087.1_2317795_2318230_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP029087.1_2318229_2319336_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP029087.1_2327377_2328733_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP029087.1_2328759_2329692_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP029087.1_2329693_2330503_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP029087.1_2330691_2331600_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP029087.1_2337840_2338905_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP029087.1_2339052_2340495_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP029087.1_2340817_2341291_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP029087.1_2341389_2342733_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP029087.1_2342909_2343593_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP029087.1_2343611_2344799_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_003073715.1_ASM307371v1	NZ_CP029087	Staphylococcus aureus strain AR461 chromosome, complete genome	11	2427998-2428078	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	15	2428023-2428053|2428023-2428053|2428023-2428053|2428023-2428053|2428023-2428053|2428023-2428053|2428023-2428053|2428023-2428053|2428023-2428053|2428023-2428053|2428023-2428053|2428023-2428053|2428023-2428053|2428023-2428053|2428023-2428053	NZ_CP029087.1_832859-832889|NZ_CP029087.1_832915-832945|NZ_CP029087.1_88433-88463|NZ_CP029087.1_386637-386607|NZ_CP029087.1_653845-653815|NZ_CP029087.1_832971-833001|NZ_CP029087.1_869189-869219|NZ_CP029087.1_1035156-1035186|NZ_CP029087.1_1181049-1181019|NZ_CP029087.1_1387149-1387119|NZ_CP029087.1_1475495-1475525|NZ_CP029087.1_1475611-1475641|NZ_CP029087.1_1761812-1761782|NZ_CP029087.1_2417222-2417252|NZ_CP029087.1_2592860-2592890	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NZ_CP029087.1_2418531_2418696_+,NA|106aa|up_8|NZ_CP029087.1_2418940_2419258_+,NA|84aa|up_5|NZ_CP029087.1_2424379_2424631_+,NA|62aa|up_0|NZ_CP029087.1_2427770_2427956_+,NA	NA|55aa|up_9|NZ_CP029087.1_2418531_2418696_+	NA	NA|106aa|up_8|NZ_CP029087.1_2418940_2419258_+	NA	NA|1056aa|up_7|NZ_CP029087.1_2419441_2422609_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP029087.1_2422725_2423991_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP029087.1_2424379_2424631_+	NA	NA|255aa|up_4|NZ_CP029087.1_2424622_2425387_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP029087.1_2425548_2425989_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP029087.1_2425981_2427193_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP029087.1_2427294_2427645_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP029087.1_2427770_2427956_+	NA	NA|341aa|down_0|NZ_CP029087.1_2428221_2429244_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP029087.1_2429263_2429863_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP029087.1_2429869_2430103_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP029087.1_2430108_2430555_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP029087.1_2430568_2431054_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP029087.1_2431050_2432310_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP029087.1_2432372_2432867_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP029087.1_2432868_2433375_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP029087.1_2433405_2434410_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP029087.1_2434579_2435185_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
