assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003073635.1_ASM307363v1	NZ_CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	1	129508-129601	1	CRISPRCasFinder	no		WYL,DinG,cas3,DEDDh,csa3	Orphan	TTCTTCAAATTTATTTGTTAGAAAGG	26	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,cas3,DEDDh,csa3	NA|35aa|up_2|NZ_CP029080.1_127229_127334_+,NA|35aa|down_0|NZ_CP029080.1_129795_129900_-	NA|200aa|up_9|NZ_CP029080.1_120706_121306_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NZ_CP029080.1_121324_121687_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NZ_CP029080.1_121941_123192_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NZ_CP029080.1_123288_124020_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NZ_CP029080.1_124016_124736_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NZ_CP029080.1_124716_125496_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NZ_CP029080.1_125616_127056_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NZ_CP029080.1_127229_127334_+	NA	NA|229aa|up_1|NZ_CP029080.1_127487_128174_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NZ_CP029080.1_128500_129367_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|35aa|down_0|NZ_CP029080.1_129795_129900_-	NA	NA|438aa|down_1|NZ_CP029080.1_129994_131308_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NZ_CP029080.1_131843_132773_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NZ_CP029080.1_133340_134288_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NZ_CP029080.1_134289_135267_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NZ_CP029080.1_135325_135793_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NZ_CP029080.1_135803_136496_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NZ_CP029080.1_136506_137622_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NZ_CP029080.1_137599_138607_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NZ_CP029080.1_138608_139967_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
GCF_003073635.1_ASM307363v1	NZ_CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	2	1177501-1177602	2	CRISPRCasFinder	no		WYL,DinG,cas3,DEDDh,csa3	Orphan	CATAAGAGCCCCTAATTAATAAATTAAAAGGGG	33	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,cas3,DEDDh,csa3	NA|39aa|up_2|NZ_CP029080.1_1175439_1175556_+,NA|230aa|down_2|NZ_CP029080.1_1179423_1180113_-,NA|100aa|down_5|NZ_CP029080.1_1181277_1181577_+	NA|336aa|up_9|NZ_CP029080.1_1167221_1168229_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_8|NZ_CP029080.1_1168814_1169612_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_7|NZ_CP029080.1_1169972_1170617_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_6|NZ_CP029080.1_1171313_1173464_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|120aa|up_5|NZ_CP029080.1_1173609_1173969_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|NZ_CP029080.1_1174158_1174875_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|NZ_CP029080.1_1174874_1175348_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|NZ_CP029080.1_1175439_1175556_+	NA	NA|215aa|up_1|NZ_CP029080.1_1175700_1176345_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|NZ_CP029080.1_1176460_1177327_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|NZ_CP029080.1_1177619_1178840_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|NZ_CP029080.1_1178836_1179325_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|NZ_CP029080.1_1179423_1180113_-	NA	NA|148aa|down_3|NZ_CP029080.1_1180240_1180684_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|130aa|down_4|NZ_CP029080.1_1180750_1181140_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|100aa|down_5|NZ_CP029080.1_1181277_1181577_+	NA	NA|181aa|down_6|NZ_CP029080.1_1181656_1182199_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|NZ_CP029080.1_1182293_1182860_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|NZ_CP029080.1_1182861_1183320_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|NZ_CP029080.1_1183322_1184006_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCF_003073635.1_ASM307363v1	NZ_CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	3	1276299-1276382	3	CRISPRCasFinder	no	cas3	WYL,DinG,cas3,DEDDh,csa3	Unclear	GTAAGCTGACTTTACGTTAGCTTCT	25	1	1	1276324-1276357	NZ_CP029080.1_1509565-1509598	NA	1	1	Unclear	WYL,DinG,cas3,DEDDh,csa3	NA,NA	NA|280aa|up_9|NZ_CP029080.1_1263720_1264560_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP029080.1_1264733_1265384_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP029080.1_1265380_1265617_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP029080.1_1265885_1267871_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|943aa|up_5|NZ_CP029080.1_1267878_1270707_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP029080.1_1271083_1272016_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP029080.1_1272021_1272861_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP029080.1_1272868_1273354_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP029080.1_1273361_1274801_+	sd00006, TPR, Tetratricopeptide repeat	NA|312aa|up_0|NZ_CP029080.1_1274867_1275803_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP029080.1_1276630_1277542_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP029080.1_1277538_1278534_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP029080.1_1278645_1279590_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP029080.1_1280152_1280740_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|545aa|down_4|NZ_CP029080.1_1280921_1282556_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|301aa|down_5|NZ_CP029080.1_1283001_1283904_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_6|NZ_CP029080.1_1284606_1285236_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_7|NZ_CP029080.1_1285844_1286858_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_8|NZ_CP029080.1_1286910_1287921_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_9|NZ_CP029080.1_1288059_1289250_+	PRK00073, pgk, phosphoglycerate kinase; Provisional
GCF_003073635.1_ASM307363v1	NZ_CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	4	1282772-1282851	4	CRISPRCasFinder	no		WYL,DinG,cas3,DEDDh,csa3	Orphan	CAGCTTCTATGTTGGGGCCCCGCC	24	1	6	1282796-1282827|1282796-1282827|1282796-1282827|1282796-1282827|1282796-1282827|1282796-1282827	NZ_CP029080.1_11613-11582|NZ_CP029080.1_11669-11638|NZ_CP029080.1_170182-170151|NZ_CP029080.1_719965-719934|NZ_CP029080.1_1370165-1370134|NZ_CP029080.1_2371445-2371414	NA	1	1	Orphan	WYL,DinG,cas3,DEDDh,csa3	NA,NA|153aa|down_8|NZ_CP029080.1_1293425_1293884_+	NA|311aa|up_9|NZ_CP029080.1_1271083_1272016_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_8|NZ_CP029080.1_1272021_1272861_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_7|NZ_CP029080.1_1272868_1273354_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_6|NZ_CP029080.1_1273361_1274801_+	sd00006, TPR, Tetratricopeptide repeat	NA|312aa|up_5|NZ_CP029080.1_1274867_1275803_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|up_4|NZ_CP029080.1_1276630_1277542_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|up_3|NZ_CP029080.1_1277538_1278534_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|up_2|NZ_CP029080.1_1278645_1279590_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|up_1|NZ_CP029080.1_1280152_1280740_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|545aa|up_0|NZ_CP029080.1_1280921_1282556_+	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase	NA|301aa|down_0|NZ_CP029080.1_1283001_1283904_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_1|NZ_CP029080.1_1284606_1285236_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_2|NZ_CP029080.1_1285844_1286858_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_3|NZ_CP029080.1_1286910_1287921_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_4|NZ_CP029080.1_1288059_1289250_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_5|NZ_CP029080.1_1289371_1290133_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|506aa|down_6|NZ_CP029080.1_1290135_1291653_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|435aa|down_7|NZ_CP029080.1_1291782_1293087_+	PRK00077, eno, enolase; Provisional	NA|153aa|down_8|NZ_CP029080.1_1293425_1293884_+	NA	NA|78aa|down_9|NZ_CP029080.1_1293950_1294184_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]
GCF_003073635.1_ASM307363v1	NZ_CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	5	2724731-2724866	5	CRISPRCasFinder	no		WYL,DinG,cas3,DEDDh,csa3	Orphan	TTTTTAATATTTTTCTTTTGAGTTACTCGAAAATTTTTCTCTTTACTC	48	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,cas3,DEDDh,csa3	NA|47aa|up_9|NZ_CP029080.1_2714728_2714869_-,NA|93aa|up_7|NZ_CP029080.1_2716770_2717049_+,NA|67aa|up_1|NZ_CP029080.1_2723404_2723605_+,NA|61aa|up_0|NZ_CP029080.1_2723586_2723769_-,NA	NA|47aa|up_9|NZ_CP029080.1_2714728_2714869_-	NA	NA|285aa|up_8|NZ_CP029080.1_2715041_2715896_-	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]	NA|93aa|up_7|NZ_CP029080.1_2716770_2717049_+	NA	NA|506aa|up_6|NZ_CP029080.1_2717058_2718576_+	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|272aa|up_5|NZ_CP029080.1_2718800_2719616_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|NZ_CP029080.1_2719909_2720335_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|NZ_CP029080.1_2720710_2721415_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|NZ_CP029080.1_2721451_2723116_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|67aa|up_1|NZ_CP029080.1_2723404_2723605_+	NA	NA|61aa|up_0|NZ_CP029080.1_2723586_2723769_-	NA	NA|133aa|down_0|NZ_CP029080.1_2726645_2727044_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_1|NZ_CP029080.1_2727057_2727495_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|268aa|down_2|NZ_CP029080.1_2727734_2728538_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_3|NZ_CP029080.1_2728542_2729349_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_4|NZ_CP029080.1_2729338_2730199_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_5|NZ_CP029080.1_2730195_2731005_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|123aa|down_6|NZ_CP029080.1_2731542_2731911_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_7|NZ_CP029080.1_2731927_2732872_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|130aa|down_8|NZ_CP029080.1_2732946_2733336_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|122aa|down_9|NZ_CP029080.1_2733359_2733725_-	PRK05179, rpsM, 30S ribosomal protein S13; Validated
GCF_003073635.1_ASM307363v1	NZ_CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	6	2763291-2763383	6	CRISPRCasFinder	no		WYL,DinG,cas3,DEDDh,csa3	Orphan	ACATTATTGTAAGCTGACTTTTCGTCACCTTCT	33	0	0	NA	NA	NA	1	1	Orphan	WYL,DinG,cas3,DEDDh,csa3	NA|55aa|up_9|NZ_CP029080.1_2753793_2753958_+,NA|106aa|up_8|NZ_CP029080.1_2754202_2754520_+,NA|84aa|up_5|NZ_CP029080.1_2759641_2759893_+,NA|57aa|up_0|NZ_CP029080.1_2763034_2763205_+,NA	NA|55aa|up_9|NZ_CP029080.1_2753793_2753958_+	NA	NA|106aa|up_8|NZ_CP029080.1_2754202_2754520_+	NA	NA|1056aa|up_7|NZ_CP029080.1_2754703_2757871_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP029080.1_2757987_2759253_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP029080.1_2759641_2759893_+	NA	NA|255aa|up_4|NZ_CP029080.1_2759884_2760649_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP029080.1_2760812_2761253_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP029080.1_2761245_2762457_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP029080.1_2762558_2762909_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP029080.1_2763034_2763205_+	NA	NA|341aa|down_0|NZ_CP029080.1_2763548_2764571_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP029080.1_2764590_2765190_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP029080.1_2765196_2765430_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP029080.1_2765435_2765882_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP029080.1_2765895_2766381_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP029080.1_2766377_2767637_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP029080.1_2767699_2768194_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP029080.1_2768195_2768702_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP029080.1_2768731_2769736_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP029080.1_2769903_2770509_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
