The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	2786146	1208570	1216389	2786146		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|1208570_1209626_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|1209625_1210312_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|1210286_1210760_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093554.1|1211100_1211541_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637683.1|1211820_1212405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062976.1|1212503_1213217_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|1213220_1213640_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446726.1|1213641_1214310_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	7.4e-66
WP_000604517.1|1214660_1215254_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	8.9e-39
WP_001217805.1|1215237_1216389_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 2
NZ_CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	2786146	1228365	1242641	2786146		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663021.1|1228365_1229424_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	2.6e-20
WP_000197263.1|1229581_1230130_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429016.1|1230817_1231735_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.1e-07
WP_031785486.1|1231825_1231927_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193753.1|1232004_1233510_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.6e-58
WP_000930014.1|1233850_1234351_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|1234370_1235237_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|1236038_1236437_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|1236399_1238505_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562500.1|1238622_1239594_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	3.2e-171
WP_000876313.1|1239968_1240940_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.9	1.0e-140
WP_001245581.1|1240926_1241883_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616861.1|1241879_1242641_+	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.6	2.7e-16
>prophage 3
NZ_CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	2786146	1544963	1589525	2786146	head,tail,plate,terminase,holin,capsid,portal	Staphylococcus_phage(73.77%)	65	NA	NA
WP_000401377.1|1544963_1545446_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_000843619.1|1545507_1546647_-	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_000872158.1|1546773_1547331_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_000290472.1|1547410_1547584_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_000861313.1|1547700_1549086_-	recombinase family protein	NA	I1W625	Staphylococcus_phage	100.0	2.5e-265
WP_000392109.1|1549292_1549973_-	hypothetical protein	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
WP_000358224.1|1550008_1550728_-	helix-turn-helix transcriptional regulator	NA	A0A2H4PQQ2	Staphylococcus_phage	100.0	1.3e-132
WP_001198672.1|1550869_1551088_+	helix-turn-helix transcriptional regulator	NA	A0A2H4PQQ0	Staphylococcus_phage	100.0	1.7e-35
WP_001148566.1|1551103_1551892_+	phage antirepressor KilAC domain-containing protein	NA	A0EWP1	Staphylococcus_virus	100.0	4.2e-145
WP_000390104.1|1551908_1552103_+	hypothetical protein	NA	E9LT75	Staphylococcus_phage	98.4	7.9e-29
WP_000395457.1|1552306_1552537_-	hypothetical protein	NA	R4IG40	Staphylococcus_phage	100.0	2.3e-35
WP_000066026.1|1552716_1552878_+	DUF1270 family protein	NA	C8CGY5	Staphylococcus_phage	100.0	2.5e-20
WP_000291489.1|1552972_1553233_+	DUF1108 family protein	NA	A0A1W6JQ03	Staphylococcus_phage	100.0	7.6e-43
WP_000999048.1|1553245_1553782_+	hypothetical protein	NA	A0A2I6PD93	Staphylococcus_phage	100.0	1.7e-81
WP_000840496.1|1553782_1554433_+	single-stranded DNA-binding protein	NA	A0A0F6N3I5	Staphylococcus_phage	100.0	1.1e-119
WP_001099009.1|1554429_1554873_+	single-stranded DNA-binding protein	NA	A0A2I6PD99	Staphylococcus_phage	100.0	1.8e-76
WP_000057263.1|1554884_1555559_+	hypothetical protein	NA	A1KX69	Staphylococcus_virus	100.0	3.9e-131
WP_000414755.1|1555697_1555979_-	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_000190253.1|1556044_1556815_+	hypothetical protein	NA	A0A1W6JQ00	Staphylococcus_phage	100.0	6.4e-122
WP_031836908.1|1556824_1557604_+	ATP-binding protein	NA	A0A1X9H042	Staphylococcus_phage	98.8	1.6e-144
WP_031836909.1|1557597_1557756_+	hypothetical protein	NA	A0A2I6PDX0	Staphylococcus_phage	94.2	2.2e-21
WP_001123674.1|1557768_1557990_+	DUF3269 family protein	NA	A0A1W6JQ35	Staphylococcus_phage	100.0	1.7e-35
WP_108703171.1|1557999_1558404_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A075M042	Staphylococcus_phage	97.0	1.0e-70
WP_000101288.1|1558416_1558785_+	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_031895369.1|1558788_1559031_+	phage protein	NA	Q4ZBT7	Staphylococcus_virus	92.5	4.4e-37
WP_108703172.1|1559045_1559447_+	hypothetical protein	NA	A0A0H4IPW3	Staphylococcus_phage	80.6	5.6e-53
WP_108703173.1|1559446_1559722_+	hypothetical protein	NA	Q4ZCN9	Staphylococcus_virus	94.5	3.0e-42
WP_058342509.1|1559714_1559951_+	DUF1024 family protein	NA	A1KX83	Staphylococcus_virus	94.9	4.9e-33
WP_058342508.1|1559955_1560126_+	hypothetical protein	NA	A7TWH6	Staphylococcus_phage	92.9	6.9e-21
WP_058342507.1|1560118_1560649_+	dUTPase	NA	B2ZYX2	Staphylococcus_phage	99.4	1.2e-95
WP_000195803.1|1560685_1560892_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000592207.1|1560888_1561275_+	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_103246442.1|1561271_1561445_+	transcriptional regulator	NA	A0A0E3TAH3	Staphylococcus_phage	98.2	4.9e-22
WP_000990005.1|1561445_1561592_+	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	2.2e-15
WP_103147030.1|1561615_1562038_+	RinA family phage transcriptional activator	NA	S4V7K2	Staphylococcus_phage	99.3	6.1e-74
WP_001003271.1|1562224_1562665_+|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	100.0	4.8e-74
WP_108703174.1|1562651_1563929_+|terminase	PBSX family phage terminase large subunit	terminase	A0EWS5	Staphylococcus_virus	98.8	8.1e-247
WP_108703175.1|1563939_1565475_+|portal	phage portal protein	portal	A1KX25	Staphylococcus_virus	98.8	2.7e-289
WP_025380771.1|1565481_1566477_+|capsid	minor capsid protein	capsid	E0Y3K7	Staphylococcus_virus	97.3	1.3e-180
WP_153095539.1|1566558_1566732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000354305.1|1566863_1567478_+	DUF4355 domain-containing protein	NA	I1W646	Staphylococcus_phage	100.0	2.9e-40
WP_001609089.1|1567491_1568466_+|capsid	phage major capsid protein	capsid	I1W645	Staphylococcus_phage	98.5	7.7e-181
WP_001609090.1|1568487_1568775_+	hypothetical protein	NA	E9LT47	Staphylococcus_phage	98.9	6.8e-45
WP_000208959.1|1568783_1569116_+|head,tail	phage head-tail connector protein	head,tail	E0Y3L2	Staphylococcus_virus	100.0	7.1e-54
WP_001268304.1|1569112_1569415_+	hypothetical protein	NA	E0Y3L3	Staphylococcus_virus	96.0	2.8e-49
WP_001017811.1|1569414_1569762_+	HK97 gp10 family phage protein	NA	I1W643	Staphylococcus_phage	100.0	5.3e-60
WP_000188652.1|1569773_1570157_+	hypothetical protein	NA	E0Y3L5	Staphylococcus_virus	100.0	2.6e-68
WP_000002583.1|1570175_1570757_+|tail	phage major tail protein, TP901-1 family	tail	Q8SDU0	Staphylococcus_phage	100.0	4.9e-106
WP_001100163.1|1570818_1571184_+	hypothetical protein	NA	Q8SDT9	Staphylococcus_phage	100.0	2.8e-59
WP_000105584.1|1571213_1571558_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_033860197.1|1571574_1575039_+	membrane protein	NA	Q4ZDU6	Staphylococcus_virus	91.9	3.9e-251
WP_000350684.1|1575051_1575999_+|tail	phage tail family protein	tail	A0EWU0	Staphylococcus_virus	100.0	3.6e-183
WP_033860195.1|1576007_1577909_+	peptidase	NA	Q8SDT5	Staphylococcus_phage	99.8	0.0e+00
WP_033860193.1|1577923_1579834_+	hypothetical protein	NA	A0A0F6N4K2	Staphylococcus_phage	99.2	0.0e+00
WP_000259602.1|1579833_1581657_+|plate	phage baseplate upper protein	plate	A0A0F6N3G2	Staphylococcus_phage	99.7	0.0e+00
WP_031764626.1|1581656_1582034_+	DUF2977 domain-containing protein	NA	W5R9M2	Staphylococcus_phage	98.4	5.8e-60
WP_015990323.1|1582043_1582217_+	XkdX family protein	NA	B2ZZ00	Staphylococcus_phage	100.0	1.0e-27
WP_000466784.1|1582257_1582557_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_033860144.1|1582693_1584592_+	CHAP domain-containing protein	NA	B2ZZ02	Staphylococcus_phage	98.6	0.0e+00
WP_033860145.1|1584604_1585777_+|plate	BppU family phage baseplate upper protein	plate	A0A2I6PCW8	Staphylococcus_phage	99.2	4.1e-197
WP_108703176.1|1585782_1586178_+	hypothetical protein	NA	A0A2H4PQP8	Staphylococcus_phage	98.5	5.1e-67
WP_000354132.1|1586233_1586671_+|holin	phage holin	holin	A0A2H4PQP0	Staphylococcus_phage	100.0	4.1e-73
WP_015978404.1|1586651_1588097_+	CHAP domain-containing protein	NA	A0A2H4PQR3	Staphylococcus_phage	100.0	8.2e-296
WP_000448197.1|1588485_1589073_+	hypothetical protein	NA	Q4ZBG7	Staphylococcus_virus	100.0	5.4e-97
WP_000971220.1|1589069_1589525_+	hypothetical protein	NA	B7T0L3	Staphylococcus_virus	100.0	2.7e-72
>prophage 4
NZ_CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	2786146	1790761	1805219	2786146	integrase,terminase,capsid,portal	Staphylococcus_phage(57.14%)	23	1784584:1784601	1808055:1808072
1784584:1784601	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
WP_000146714.1|1790761_1791469_-|integrase	tyrosine-type recombinase/integrase	integrase	V9QKF1	Oenococcus_phage	26.2	4.7e-10
WP_001183752.1|1791521_1792217_-	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.9	1.4e-06
WP_000554409.1|1792228_1792612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001083979.1|1792758_1793124_-	helix-turn-helix domain-containing protein	NA	R9QTP6	Staphylococcus_phage	47.9	1.8e-21
WP_000842950.1|1793285_1793522_+	DUF739 family protein	NA	A0A2I6PDH8	Staphylococcus_phage	82.4	7.4e-29
WP_000789021.1|1793546_1793828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072840.1|1793998_1794160_+	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
WP_000786995.1|1794246_1794564_+	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	80.6	1.6e-39
WP_000786635.1|1794553_1794820_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.9e-18
WP_001004328.1|1794824_1795361_+	hypothetical protein	NA	A0A0H3U480	Staphylococcus_phage	81.4	1.1e-75
WP_000818736.1|1795361_1796141_+	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	88.8	9.3e-129
WP_076679818.1|1796221_1796716_+	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	94.0	9.9e-84
WP_000929467.1|1796729_1797668_+	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	48.1	4.8e-47
WP_000945229.1|1797668_1797959_+	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	5.5e-18
WP_000714365.1|1797973_1798132_+	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	90.4	7.9e-19
WP_000185174.1|1798440_1798971_+	nucleotide pyrophosphohydrolase	NA	A0A1P8VVP1	Streptococcus_phage	39.1	8.0e-23
WP_025174108.1|1799112_1799220_+	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	84.4	1.4e-06
WP_000835356.1|1799216_1799681_+	hypothetical protein	NA	C9E2P0	Enterococcus_phage	43.7	2.5e-20
WP_000653928.1|1799957_1800446_+	hypothetical protein	NA	R9TMH4	Paenibacillus_phage	27.7	1.9e-07
WP_000090969.1|1800597_1801026_+	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
WP_000207539.1|1801012_1802287_+|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	76.4	1.2e-194
WP_108703185.1|1802299_1803748_+|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	69.2	4.1e-194
WP_078064715.1|1804277_1805219_+|capsid	minor capsid protein	capsid	Q4ZE35	Staphylococcus_virus	70.4	5.0e-52
1808055:1808072	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 5
NZ_CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	2786146	2076962	2085274	2786146	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|2076962_2077748_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|2077873_2078764_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062169.1|2078773_2080120_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683915.1|2080233_2081334_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
WP_000624564.1|2081336_2082014_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|2082144_2083251_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_108703198.1|2083474_2085274_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	35.8	6.6e-53
>prophage 6
NZ_CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	2786146	2154588	2163632	2786146	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364543.1|2154588_2155107_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_000594988.1|2155128_2157402_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.5	7.3e-65
WP_000749795.1|2157605_2159885_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|2160159_2160420_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|2160438_2161578_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019180.1|2161600_2162626_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005764.1|2162627_2163632_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 7
NZ_CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	2786146	2299122	2331722	2786146	protease	Staphylococcus_phage(93.1%)	36	NA	NA
WP_000764418.1|2299122_2299686_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	98.4	4.1e-102
WP_000757543.1|2299802_2300204_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|2300774_2301602_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|2301604_2301724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|2301835_2302837_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|2302958_2303423_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_108703205.1|2303435_2304617_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	2.8e-225
WP_000493880.1|2304627_2305260_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	97.6	2.1e-110
WP_029549219.1|2305266_2306298_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	1.2e-195
WP_108703206.1|2306791_2308294_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221174.1|2308936_2309251_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	96.2	1.8e-51
WP_000989113.1|2309250_2310543_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.9	3.0e-217
WP_001032834.1|2310629_2311484_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|2311758_2311983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671060.1|2312181_2312652_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	85.2	3.8e-69
WP_001152694.1|2312764_2313208_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030473.1|2313194_2313638_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.1e-49
WP_000492904.1|2314736_2315357_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_108703207.1|2315856_2316570_-	transaldolase	NA	M1PR54	Cyanophage	35.3	1.2e-18
WP_000091443.1|2316828_2317131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200545.1|2317386_2317752_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	6.2e-59
WP_000623468.1|2317748_2318102_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	91.5	2.7e-19
WP_000453324.1|2318351_2319185_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	3.5e-158
WP_000366165.1|2319396_2320305_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
WP_000933821.1|2320429_2321623_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109912.1|2321994_2323587_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_001827685.1|2323966_2324713_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	6.6e-140
WP_000672013.1|2324717_2325191_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718111.1|2325256_2325514_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	97.6	1.0e-44
WP_000778530.1|2325510_2326512_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	3.1e-185
WP_000348383.1|2326516_2327995_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.1	1.0e-277
WP_072468941.1|2328153_2328609_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	2.3e-79
WP_001796416.1|2328911_2329562_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	70.4	1.3e-30
WP_000070666.1|2329642_2330638_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	1.9e-73
WP_000669031.1|2330713_2331340_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	3.9e-85
WP_000627532.1|2331380_2331722_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	91.2	4.8e-53
>prophage 8
NZ_CP029080	Staphylococcus aureus strain AR466 chromosome, complete genome	2786146	2426861	2519397	2786146	tRNA,head,protease,tail,integrase,terminase,holin,capsid,portal	Staphylococcus_phage(87.18%)	113	2486248:2486265	2510595:2510612
WP_000170162.1|2426861_2427164_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957019.1|2427530_2429069_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831695.1|2429157_2430357_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774563.1|2430369_2432373_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	7.5e-114
WP_000992924.1|2432376_2434569_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272062.1|2434565_2435258_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2435429_2435732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2435840_2437136_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827739.1|2437982_2439149_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434537.1|2439179_2439506_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669865.1|2439796_2439970_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2439950_2440553_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000164017.1|2440823_2441645_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	4.4e-68
WP_000284429.1|2441637_2443107_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.3	2.5e-106
WP_000898869.1|2443290_2444367_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177820.1|2444386_2445181_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_031785526.1|2445252_2445360_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|2445370_2446933_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275721.1|2447137_2448235_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	2.5e-47
WP_000149686.1|2448606_2449167_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2449219_2450149_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|2450341_2450515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021226.1|2450566_2451946_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181320.1|2452065_2453094_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205103.1|2453363_2453765_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	1.3e-22
WP_000267034.1|2453821_2453995_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188080.1|2454445_2455486_+	choloylglycine hydrolase	NA	NA	NA	NA	NA
WP_000713063.1|2455542_2456385_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033966.1|2456381_2456939_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966286.1|2456998_2457523_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2457643_2458207_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221648.1|2458272_2459013_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2459012_2459885_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645721.1|2459881_2460562_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991300.1|2460562_2461459_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2461455_2461836_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681966.1|2462093_2462270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2462511_2462610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068518.1|2462809_2464096_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000669710.1|2464366_2466436_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|2467393_2467573_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2467883_2468144_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2468196_2468547_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|2469230_2469680_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_020444758.1|2469774_2470233_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000919350.1|2470759_2471251_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|2471441_2472197_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611509.1|2472208_2472463_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	98.8	3.4e-40
WP_001791821.1|2472514_2472622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2472674_2472851_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|2473000_2473297_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|2473354_2473642_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|2473688_2473841_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_108703213.1|2473830_2477616_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.4	0.0e+00
WP_000567408.1|2477631_2479116_-|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_001796452.1|2479112_2483642_-|tail	phage tail tape measure protein	tail	A0A2I6PDK2	Staphylococcus_phage	99.8	0.0e+00
WP_001789580.1|2483698_2483860_-	hypothetical protein	NA	A0A0H3U330	Staphylococcus_phage	100.0	1.6e-22
WP_001096355.1|2483886_2484237_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|2484286_2484511_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268733.1|2484552_2485197_-|tail	phage tail protein	tail	A0A1X9H0J2	Staphylococcus_phage	100.0	1.5e-119
WP_000565498.1|2485197_2485605_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114227.1|2485601_2486006_-	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	99.3	2.1e-68
WP_000755150.1|2486002_2486365_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2486248:2486265	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|2486348_2486633_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2486622_2486907_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|2486926_2488072_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|2488095_2488833_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|2488816_2490004_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_108703214.1|2490019_2491681_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	99.8	0.0e+00
WP_000402904.1|2491677_2492022_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2492152_2492452_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|2492683_2493100_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_001622114.1|2493127_2493328_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
WP_000595265.1|2493327_2493477_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|2493473_2493860_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|2493856_2494063_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282074.1|2494059_2494305_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_001066447.1|2494341_2494878_-	hypothetical protein	NA	A0A0H3U2Z8	Staphylococcus_phage	100.0	7.2e-96
WP_001065097.1|2495027_2495282_-	DUF1024 family protein	NA	A0A0H3U469	Staphylococcus_phage	100.0	5.0e-39
WP_000131370.1|2495296_2495539_-	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
WP_000101288.1|2495542_2495911_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000401960.1|2495923_2496328_-	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000338530.1|2496336_2496555_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148321.1|2496561_2497455_-	DnaD domain-containing protein	NA	A0A2I6PDG7	Staphylococcus_phage	99.3	5.5e-141
WP_000610648.1|2497484_2497955_-	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	98.7	1.3e-80
WP_073394849.1|2497955_2498573_-	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	100.0	9.1e-87
WP_000138475.1|2498653_2499574_-	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_108703215.1|2499575_2501519_-	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	99.8	0.0e+00
WP_001205732.1|2501527_2501791_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291510.1|2501799_2502060_-	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_000165371.1|2502064_2502367_-	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000048129.1|2502461_2502623_-	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_001120201.1|2502619_2502943_-	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000762519.1|2502997_2503378_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	99.2	3.4e-68
WP_001148862.1|2503364_2503562_-	hypothetical protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
WP_001148605.1|2503577_2504330_-	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_000128907.1|2504380_2504710_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
WP_001025404.1|2504698_2504914_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_043859301.1|2504947_2505193_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	6.9e-38
WP_001801500.1|2505189_2505363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|2505325_2506039_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|2506054_2506987_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|2506992_2507334_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705248.1|2507537_2507720_+	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000825947.1|2507819_2508284_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_108703216.1|2508342_2509380_+|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	99.7	2.0e-179
WP_000595616.1|2510517_2511537_-	beta-channel forming cytolysin	NA	A0A2I6PEU3	Staphylococcus_phage	39.8	2.6e-54
2510595:2510612	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791399.1|2511558_2512614_-	succinyl-diaminopimelate desuccinylase	NA	A0A2I6PER8	Staphylococcus_phage	34.6	6.0e-38
WP_108703217.1|2513044_2514268_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045070.1|2514663_2515971_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000240642.1|2516502_2518119_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2518194_2518479_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197627.1|2518653_2519397_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
