assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003073415.1_ASM307341v1	NZ_CP029030	Staphylococcus aureus subsp. aureus strain CAR chromosome, complete genome	1	433556-433656	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_9|NZ_CP029030.1_425128_425338_-,NA|128aa|up_7|NZ_CP029030.1_426162_426546_-,NA|98aa|up_5|NZ_CP029030.1_427499_427793_-,NA|34aa|up_0|NZ_CP029030.1_432780_432882_+,NA|221aa|down_1|NZ_CP029030.1_434746_435409_-,NA|179aa|down_7|NZ_CP029030.1_441500_442037_-	NA|70aa|up_9|NZ_CP029030.1_425128_425338_-	NA	NA|194aa|up_8|NZ_CP029030.1_425515_426097_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NZ_CP029030.1_426162_426546_-	NA	NA|209aa|up_6|NZ_CP029030.1_426800_427427_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_5|NZ_CP029030.1_427499_427793_-	NA	NA|508aa|up_4|NZ_CP029030.1_427871_429395_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP029030.1_429410_429980_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP029030.1_430471_431227_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP029030.1_431307_432696_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP029030.1_432780_432882_+	NA	NA|319aa|down_0|NZ_CP029030.1_433672_434629_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP029030.1_434746_435409_-	NA	NA|136aa|down_2|NZ_CP029030.1_435551_435959_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP029030.1_436471_437050_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP029030.1_437049_438318_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP029030.1_438355_439822_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP029030.1_439846_441388_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP029030.1_441500_442037_-	NA	NA|235aa|down_8|NZ_CP029030.1_442429_443134_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP029030.1_443532_443805_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_003073415.1_ASM307341v1	NZ_CP029030	Staphylococcus aureus subsp. aureus strain CAR chromosome, complete genome	2	672074-672166	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP029030.1_668558_668666_+,NA|169aa|down_4|NZ_CP029030.1_675913_676420_+,NA|239aa|down_5|NZ_CP029030.1_676581_677298_+	NA|313aa|up_9|NZ_CP029030.1_662760_663699_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP029030.1_663909_664446_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP029030.1_664614_665091_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP029030.1_665130_666426_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP029030.1_666453_666975_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP029030.1_667473_668484_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP029030.1_668558_668666_+	NA	NA|128aa|up_2|NZ_CP029030.1_668791_669175_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP029030.1_669171_670833_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP029030.1_671220_671856_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP029030.1_672294_673122_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP029030.1_673269_674220_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP029030.1_674274_674994_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP029030.1_674977_675778_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP029030.1_675913_676420_+	NA	NA|239aa|down_5|NZ_CP029030.1_676581_677298_+	NA	NA|263aa|down_6|NZ_CP029030.1_677466_678255_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP029030.1_678505_678880_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP029030.1_679827_680757_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP029030.1_680951_681176_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_003073415.1_ASM307341v1	NZ_CP029030	Staphylococcus aureus subsp. aureus strain CAR chromosome, complete genome	3	834527-834612	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	834557-834582|834557-834582|834557-834582|834557-834582|834557-834582	NZ_CP029030.1_797519-797494|NZ_CP029030.1_2787209-2787234|NZ_CP029030.1_2787265-2787290|NZ_CP029030.1_797575-797550|NZ_CP029030.1_940548-940523	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP029030.1_821779_822619_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP029030.1_822792_823443_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP029030.1_823439_823676_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP029030.1_823944_825930_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP029030.1_825937_828784_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP029030.1_829445_830378_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP029030.1_830383_831223_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP029030.1_831230_831716_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP029030.1_831723_833163_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP029030.1_833229_834165_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP029030.1_835044_835956_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP029030.1_835952_836948_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP029030.1_837057_838002_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP029030.1_838575_839163_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP029030.1_839405_840308_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP029030.1_841009_841639_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP029030.1_842280_843294_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP029030.1_843346_844357_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP029030.1_844495_845686_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP029030.1_845807_846569_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_003073415.1_ASM307341v1	NZ_CP029030	Staphylococcus aureus subsp. aureus strain CAR chromosome, complete genome	4	877738-877819	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	877762-877795|877762-877795	NZ_CP029030.1_1366756-1366723|NZ_CP029030.1_1455915-1455948	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP029030.1_876640_876754_+,NA	NA|206aa|up_9|NZ_CP029030.1_871495_872113_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP029030.1_872267_872762_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP029030.1_873160_873583_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP029030.1_873730_874447_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP029030.1_874529_875069_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP029030.1_875218_875539_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP029030.1_875682_876039_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP029030.1_876196_876577_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP029030.1_876640_876754_+	NA	NA|293aa|up_0|NZ_CP029030.1_876755_877634_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP029030.1_878375_878762_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP029030.1_878754_879051_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP029030.1_879300_880326_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP029030.1_880318_881014_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP029030.1_881031_881853_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP029030.1_881995_883216_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP029030.1_883303_884032_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP029030.1_884055_884784_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|153aa|down_8|NZ_CP029030.1_884800_885259_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|111aa|down_9|NZ_CP029030.1_885270_885603_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_003073415.1_ASM307341v1	NZ_CP029030	Staphylococcus aureus subsp. aureus strain CAR chromosome, complete genome	5	940549-940831	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	6	940579-940604|940579-940604|940579-940604|940579-940604|940693-940718|940693-940718	NZ_CP029030.1_940523-940548|NZ_CP029030.1_797494-797519|NZ_CP029030.1_2787234-2787209|NZ_CP029030.1_2787290-2787265|NZ_CP029030.1_834638-834613|NZ_CP029030.1_394889-394914	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP029030.1_929437_930934_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP029030.1_930926_931256_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP029030.1_931267_931696_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP029030.1_931688_934094_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP029030.1_934224_934608_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP029030.1_934671_935265_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP029030.1_935680_936058_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP029030.1_936419_937547_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP029030.1_937854_939045_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP029030.1_939153_940398_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP029030.1_940900_941830_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP029030.1_942071_943451_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP029030.1_943440_944646_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP029030.1_944996_946328_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP029030.1_946652_947228_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP029030.1_947232_947757_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP029030.1_947772_948348_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP029030.1_948507_951984_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP029030.1_951984_955638_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP029030.1_955803_956706_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_003073415.1_ASM307341v1	NZ_CP029030	Staphylococcus aureus subsp. aureus strain CAR chromosome, complete genome	6	1074222-1074309	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|40aa|up_0|NZ_CP029030.1_1074098_1074218_+,NA|45aa|down_0|NZ_CP029030.1_1074318_1074453_-,NA|432aa|down_1|NZ_CP029030.1_1074604_1075900_+	NA|730aa|up_9|NZ_CP029030.1_1062676_1064866_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|NZ_CP029030.1_1064844_1066329_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|NZ_CP029030.1_1066321_1067350_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|NZ_CP029030.1_1067352_1067919_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|NZ_CP029030.1_1067933_1069412_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|NZ_CP029030.1_1069433_1070681_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|NZ_CP029030.1_1070945_1071752_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|NZ_CP029030.1_1071744_1073145_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|NZ_CP029030.1_1073159_1073735_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|NZ_CP029030.1_1074098_1074218_+	NA	NA|45aa|down_0|NZ_CP029030.1_1074318_1074453_-	NA	NA|432aa|down_1|NZ_CP029030.1_1074604_1075900_+	NA	NA|391aa|down_2|NZ_CP029030.1_1076324_1077497_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP029030.1_1077550_1078093_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP029030.1_1078246_1078513_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP029030.1_1078515_1080234_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP029030.1_1080470_1080704_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP029030.1_1080901_1082263_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP029030.1_1082259_1083279_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP029030.1_1083411_1084074_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_003073415.1_ASM307341v1	NZ_CP029030	Staphylococcus aureus subsp. aureus strain CAR chromosome, complete genome	7	2029506-2029584	6	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	6	2029529-2029561|2029529-2029561|2029529-2029561|2029529-2029561|2029529-2029561|2029529-2029561	NZ_CP029030.1_834593-834625|NZ_CP029030.1_1158585-1158553|NZ_CP029030.1_1366710-1366678|NZ_CP029030.1_1694551-1694583|NZ_CP029030.1_2621859-2621891|NZ_CP029030.1_1455961-1455993	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP029030.1_2023700_2023976_+,NA|129aa|up_1|NZ_CP029030.1_2027961_2028348_-,NA|138aa|down_1|NZ_CP029030.1_2031385_2031799_-,NA|37aa|down_2|NZ_CP029030.1_2031827_2031938_-,NA|31aa|down_6|NZ_CP029030.1_2034943_2035036_-	NA|419aa|up_9|NZ_CP029030.1_2021623_2022880_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP029030.1_2022882_2023083_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP029030.1_2023229_2023694_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP029030.1_2023700_2023976_+	NA	NA|406aa|up_5|NZ_CP029030.1_2024253_2025471_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP029030.1_2025586_2026216_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP029030.1_2026205_2027249_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP029030.1_2027245_2027947_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP029030.1_2027961_2028348_-	NA	NA|253aa|up_0|NZ_CP029030.1_2028564_2029323_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP029030.1_2029850_2030837_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP029030.1_2031385_2031799_-	NA	NA|37aa|down_2|NZ_CP029030.1_2031827_2031938_-	NA	NA|244aa|down_3|NZ_CP029030.1_2032023_2032755_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP029030.1_2032756_2034070_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP029030.1_2034361_2034862_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP029030.1_2034943_2035036_-	NA	DEDDh|185aa|down_7|NZ_CP029030.1_2035250_2035805_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP029030.1_2035872_2036943_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP029030.1_2037189_2037720_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_003073415.1_ASM307341v1	NZ_CP029030	Staphylococcus aureus subsp. aureus strain CAR chromosome, complete genome	8	2221735-2221885	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP029030.1_2216606_2216837_-,NA|364aa|up_0|NZ_CP029030.1_2220625_2221717_+,NA|35aa|down_0|NZ_CP029030.1_2222216_2222321_-,NA|31aa|down_2|NZ_CP029030.1_2224432_2224525_+	NA|237aa|up_9|NZ_CP029030.1_2212216_2212927_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP029030.1_2213047_2213491_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP029030.1_2213690_2214104_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP029030.1_2214561_2215935_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP029030.1_2216606_2216837_-	NA	NA|313aa|up_4|NZ_CP029030.1_2216867_2217806_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP029030.1_2218240_2218906_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP029030.1_2219057_2219378_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP029030.1_2219379_2220360_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP029030.1_2220625_2221717_+	NA	NA|35aa|down_0|NZ_CP029030.1_2222216_2222321_-	NA	NA|379aa|down_1|NZ_CP029030.1_2223007_2224144_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP029030.1_2224432_2224525_+	NA	NA|286aa|down_3|NZ_CP029030.1_2225229_2226087_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP029030.1_2226154_2226937_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP029030.1_2227168_2228974_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP029030.1_2229654_2231193_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP029030.1_2231227_2233360_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP029030.1_2233371_2233806_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP029030.1_2233805_2234912_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_003073415.1_ASM307341v1	NZ_CP029030	Staphylococcus aureus subsp. aureus strain CAR chromosome, complete genome	9	2345897-2346090	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2345920-2345952|2345920-2345952|2345920-2345952|2345920-2345952|2345920-2345952|2345976-2346011|2345976-2346011|2345976-2346011|2345976-2346011|2346035-2346067|2346035-2346067|2346035-2346067|2346035-2346067	NZ_CP029030.1_834593-834625|NZ_CP029030.1_1158585-1158553|NZ_CP029030.1_1366710-1366678|NZ_CP029030.1_1455961-1455993|NZ_CP029030.1_2621859-2621891|NZ_CP029030.1_1158532-1158497|NZ_CP029030.1_1872879-1872844|NZ_CP029030.1_1694490-1694525|NZ_CP029030.1_2040391-2040426|NZ_CP029030.1_834593-834625|NZ_CP029030.1_1158585-1158553|NZ_CP029030.1_1366710-1366678|NZ_CP029030.1_2621859-2621891	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP029030.1_2336424_2336589_+,NA|106aa|up_8|NZ_CP029030.1_2336833_2337151_+,NA|84aa|up_5|NZ_CP029030.1_2342275_2342527_+,NA|57aa|up_0|NZ_CP029030.1_2345666_2345837_+,NA	NA|55aa|up_9|NZ_CP029030.1_2336424_2336589_+	NA	NA|106aa|up_8|NZ_CP029030.1_2336833_2337151_+	NA	NA|1056aa|up_7|NZ_CP029030.1_2337337_2340505_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP029030.1_2340621_2341887_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP029030.1_2342275_2342527_+	NA	NA|255aa|up_4|NZ_CP029030.1_2342518_2343283_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP029030.1_2343444_2343885_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP029030.1_2343877_2345089_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP029030.1_2345190_2345541_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP029030.1_2345666_2345837_+	NA	NA|341aa|down_0|NZ_CP029030.1_2346231_2347254_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP029030.1_2347273_2347873_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP029030.1_2347879_2348113_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP029030.1_2348118_2348565_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP029030.1_2348578_2349064_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP029030.1_2349060_2350320_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP029030.1_2350382_2350877_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP029030.1_2350878_2351385_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP029030.1_2351415_2352420_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP029030.1_2352589_2353195_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
