assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003054785.2_ASM305478v2	NZ_CP044978	Bacillus thuringiensis strain BT62 chromosome, complete genome	1	574383-574516	1	CRISPRCasFinder	no		csa3,DEDDh,cas14k,cas14j,cas3,DinG,Cas14u_CAS-V,WYL	Orphan	GTTGATTTCTCTTCTTTTTGAGA	23	0	0	NA	NA	NA	2	2	Orphan	csa3,DEDDh,cas14k,cas14j,cas3,DinG,Cas14u_CAS-V,WYL,cas6,cas8b1,cas7b,cas5	NA|45aa|up_0|NZ_CP044978.1_574060_574195_-,NA	NA|227aa|up_9|NZ_CP044978.1_566004_566685_-	pfam02397, Bac_transf, Bacterial sugar transferase	NA|294aa|up_8|NZ_CP044978.1_566702_567584_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|256aa|up_7|NZ_CP044978.1_567826_568594_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|234aa|up_6|NZ_CP044978.1_568706_569408_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|248aa|up_5|NZ_CP044978.1_569397_570141_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|226aa|up_4|NZ_CP044978.1_570414_571092_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|145aa|up_3|NZ_CP044978.1_571451_571886_-	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ	NA|334aa|up_2|NZ_CP044978.1_572317_573319_-	PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional	NA|91aa|up_1|NZ_CP044978.1_573479_573752_-	pfam12116, SpoIIID, Stage III sporulation protein D	NA|45aa|up_0|NZ_CP044978.1_574060_574195_-	NA	NA|236aa|down_0|NZ_CP044978.1_575404_576112_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|281aa|down_1|NZ_CP044978.1_576111_576954_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|336aa|down_2|NZ_CP044978.1_577135_578143_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|340aa|down_3|NZ_CP044978.1_578240_579260_-	TIGR02870, Stage_II_sporulation_protein_D, stage II sporulation protein D	NA|435aa|down_4|NZ_CP044978.1_579466_580771_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|237aa|down_5|NZ_CP044978.1_580810_581521_-	pfam08680, DUF1779, TATA-box binding	NA|79aa|down_6|NZ_CP044978.1_581566_581803_-	COG4836, COG4836, Predicted membrane protein [Function unknown]	NA|507aa|down_7|NZ_CP044978.1_582005_583526_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|501aa|down_8|NZ_CP044978.1_583527_585030_-	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|621aa|down_9|NZ_CP044978.1_585026_586889_-	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed
GCF_003054785.2_ASM305478v2	NZ_CP044978	Bacillus thuringiensis strain BT62 chromosome, complete genome	2	3136600-3136961	1	CRT	no		csa3,DEDDh,cas14k,cas14j,cas3,DinG,Cas14u_CAS-V,WYL	Orphan	AACAGGNCCAACNGGAGN	18	0	0	NA	NA	NA	8	8	Orphan	csa3,DEDDh,cas14k,cas14j,cas3,DinG,Cas14u_CAS-V,WYL,cas6,cas8b1,cas7b,cas5	NA|48aa|up_4|NZ_CP044978.1_3130281_3130425_-,NA|168aa|up_3|NZ_CP044978.1_3130849_3131353_-,NA|91aa|up_1|NZ_CP044978.1_3132256_3132529_-,NA	NA|230aa|up_9|NZ_CP044978.1_3123983_3124673_+	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|up_8|NZ_CP044978.1_3124931_3125819_+	pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain	NA|199aa|up_7|NZ_CP044978.1_3125852_3126449_+	pfam07081, DUF1349, Protein of unknown function (DUF1349)	NA|585aa|up_6|NZ_CP044978.1_3126670_3128425_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|599aa|up_5|NZ_CP044978.1_3128417_3130214_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|48aa|up_4|NZ_CP044978.1_3130281_3130425_-	NA	NA|168aa|up_3|NZ_CP044978.1_3130849_3131353_-	NA	NA|95aa|up_2|NZ_CP044978.1_3131729_3132014_-	pfam13799, DUF4183, Domain of unknown function (DUF4183)	NA|91aa|up_1|NZ_CP044978.1_3132256_3132529_-	NA	NA|198aa|up_0|NZ_CP044978.1_3133637_3134231_-	pfam18573, BclA_C, BclA C-terminal domain	NA|211aa|down_0|NZ_CP044978.1_3138026_3138659_-	cd20306, cupin_OxDC-like, Oxalate decarboxylase (OxDC)-like cupin domain	NA|102aa|down_1|NZ_CP044978.1_3138888_3139194_+	pfam17648, DUF5519, Family of unknown function (DUF5519)	NA|437aa|down_2|NZ_CP044978.1_3139287_3140598_+	pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase	NA|290aa|down_3|NZ_CP044978.1_3140575_3141445_+	PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional	NA|198aa|down_4|NZ_CP044978.1_3141939_3142533_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|371aa|down_5|NZ_CP044978.1_3142847_3143960_+	pfam05816, TelA, Toxic anion resistance protein (TelA)	NA|278aa|down_6|NZ_CP044978.1_3143984_3144818_+	pfam13120, DUF3974, Domain of unknown function (DUF3974)	NA|520aa|down_7|NZ_CP044978.1_3144875_3146435_-	pfam02638, GHL10, Glycosyl hydrolase-like 10	NA|102aa|down_8|NZ_CP044978.1_3146662_3146968_+	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|428aa|down_9|NZ_CP044978.1_3146979_3148263_+	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]
GCF_003054785.2_ASM305478v2	NZ_CP044978	Bacillus thuringiensis strain BT62 chromosome, complete genome	3	3488000-3488185	2	CRISPRCasFinder	no		csa3,DEDDh,cas14k,cas14j,cas3,DinG,Cas14u_CAS-V,WYL	Orphan	ACTGGAAGTACTGGTCTCACTGGA	24	0	0	NA	NA	NA	3	3	Orphan	csa3,DEDDh,cas14k,cas14j,cas3,DinG,Cas14u_CAS-V,WYL,cas6,cas8b1,cas7b,cas5	NA,NA|155aa|down_0|NZ_CP044978.1_3488855_3489320_+,NA|124aa|down_8|NZ_CP044978.1_3494386_3494758_-	NA|164aa|up_9|NZ_CP044978.1_3475885_3476377_-	cd01277, HINT_subgroup, HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides	NA|279aa|up_8|NZ_CP044978.1_3476942_3477779_-	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]	NA|402aa|up_7|NZ_CP044978.1_3477771_3478977_-	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]	NA|286aa|up_6|NZ_CP044978.1_3479148_3480006_+	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold	NA|194aa|up_5|NZ_CP044978.1_3480049_3480631_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|229aa|up_4|NZ_CP044978.1_3480652_3481339_-	PRK06704, PRK06704, RNA polymerase subunit sigma-70	NA|107aa|up_3|NZ_CP044978.1_3481480_3481801_+	COG0633, Fdx, Ferredoxin [Energy production and conversion]	NA|221aa|up_2|NZ_CP044978.1_3481805_3482468_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|145aa|up_1|NZ_CP044978.1_3482579_3483014_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|456aa|up_0|NZ_CP044978.1_3483140_3484508_-	PRK13211, PRK13211, N-acetylglucosamine-binding protein GbpA	NA|155aa|down_0|NZ_CP044978.1_3488855_3489320_+	NA	NA|168aa|down_1|NZ_CP044978.1_3490498_3491002_-	PRK08118, PRK08118, DNA topology modulation protein	NA|310aa|down_2|NZ_CP044978.1_3490998_3491928_-	cd05153, HomoserineK_II, Type II Homoserine Kinase	NA|124aa|down_3|NZ_CP044978.1_3491966_3492338_-	pfam10990, DUF2809, Protein of unknown function (DUF2809)	NA|236aa|down_4|NZ_CP044978.1_3492403_3493111_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|118aa|down_5|NZ_CP044978.1_3493132_3493486_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|135aa|down_6|NZ_CP044978.1_3493501_3493906_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_7|NZ_CP044978.1_3493941_3494358_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|124aa|down_8|NZ_CP044978.1_3494386_3494758_-	NA	NA|259aa|down_9|NZ_CP044978.1_3494754_3495531_-	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family
GCF_003054785.2_ASM305478v2	NZ_CP044978	Bacillus thuringiensis strain BT62 chromosome, complete genome	4	4042199-4042306	3	CRISPRCasFinder	no		csa3,DEDDh,cas14k,cas14j,cas3,DinG,Cas14u_CAS-V,WYL	Orphan	CAACTTACAATATATCAACGATTTTT	26	1	4	4042225-4042280|4042225-4042280|4042225-4042280|4042225-4042280	NZ_CP044978.1_4042184-4042239|NZ_CP044978.1_5047459-5047514|NZ_CP044978.1_5047500-5047555|NZ_CP044978.1_268865-268920	NA	1	1	Orphan	csa3,DEDDh,cas14k,cas14j,cas3,DinG,Cas14u_CAS-V,WYL,cas6,cas8b1,cas7b,cas5	NA|159aa|up_9|NZ_CP044978.1_4034167_4034644_+,NA|313aa|up_8|NZ_CP044978.1_4034715_4035654_+,NA|237aa|up_7|NZ_CP044978.1_4035715_4036426_-,NA|65aa|up_3|NZ_CP044978.1_4040045_4040240_-,NA|322aa|up_0|NZ_CP044978.1_4041046_4042012_-,NA|280aa|down_3|NZ_CP044978.1_4045241_4046081_-	NA|159aa|up_9|NZ_CP044978.1_4034167_4034644_+	NA	NA|313aa|up_8|NZ_CP044978.1_4034715_4035654_+	NA	NA|237aa|up_7|NZ_CP044978.1_4035715_4036426_-	NA	NA|253aa|up_6|NZ_CP044978.1_4036764_4037523_-	PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|553aa|up_5|NZ_CP044978.1_4037580_4039239_-	pfam16949, ABC_tran_2, Putative ATP-binding cassette	NA|242aa|up_4|NZ_CP044978.1_4039231_4039957_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|65aa|up_3|NZ_CP044978.1_4040045_4040240_-	NA	NA|120aa|up_2|NZ_CP044978.1_4040419_4040779_+	pfam12676, DUF3796, Protein of unknown function (DUF3796)	NA|67aa|up_1|NZ_CP044978.1_4040766_4040967_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|322aa|up_0|NZ_CP044978.1_4041046_4042012_-	NA	NA|237aa|down_0|NZ_CP044978.1_4042341_4043052_-	TIGR02254, hydrolase_haloacid_dehalogenase-like_family, noncanonical pyrimidine nucleotidase, YjjG family	NA|305aa|down_1|NZ_CP044978.1_4043096_4044011_-	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins	NA|340aa|down_2|NZ_CP044978.1_4044132_4045152_-	pfam13350, Y_phosphatase3, Tyrosine phosphatase family	NA|280aa|down_3|NZ_CP044978.1_4045241_4046081_-	NA	NA|241aa|down_4|NZ_CP044978.1_4046132_4046855_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|280aa|down_5|NZ_CP044978.1_4046978_4047818_+	pfam10978, DUF2785, Protein of unknown function (DUF2785)	NA|153aa|down_6|NZ_CP044978.1_4047835_4048294_+	cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|333aa|down_7|NZ_CP044978.1_4048290_4049289_-	PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional	NA|386aa|down_8|NZ_CP044978.1_4049679_4050837_+	PRK12464, PRK12464, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|374aa|down_9|NZ_CP044978.1_4050866_4051988_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]
GCF_003054785.2_ASM305478v2	NZ_CP044982	Bacillus thuringiensis strain BT62 plasmid pBT62D, complete sequence	1	1608-1688	1	CRISPRCasFinder	no			Orphan	TTTTTCGGAGTACGCTCGGCTAAATAAA	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas14k,cas14j,cas3,DinG,Cas14u_CAS-V,WYL,cas6,cas8b1,cas7b,cas5	NA|73aa|up_1|NZ_CP044982.1_638_857_-,NA|61aa|up_0|NZ_CP044982.1_1342_1525_+,NA|87aa|down_0|NZ_CP044982.1_1862_2123_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|73aa|up_1|NZ_CP044982.1_638_857_-	NA	NA|61aa|up_0|NZ_CP044982.1_1342_1525_+	NA	NA|87aa|down_0|NZ_CP044982.1_1862_2123_-	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
