assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003054385.1_ASM305438v1	NZ_CP028716	Klebsiella pneumoniae strain SCM96 chromosome, complete genome	1	1650336-1650464	1	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,RT	Unclear	GTTTTGTAGGCCGGGTAAGGCGCCAGCCGCCACCCGGCA	39	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,RT	NA,NA	NA|194aa|up_9|NZ_CP028716.1_1641690_1642272_+	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|256aa|up_8|NZ_CP028716.1_1642346_1643114_+	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|247aa|up_7|NZ_CP028716.1_1643084_1643825_-	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|448aa|up_6|NZ_CP028716.1_1644236_1645580_+	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|413aa|up_5|NZ_CP028716.1_1645583_1646822_+	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|265aa|up_4|NZ_CP028716.1_1646814_1647609_+	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|213aa|up_3|NZ_CP028716.1_1647601_1648240_+	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|199aa|up_2|NZ_CP028716.1_1648246_1648843_+	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|408aa|up_1|NZ_CP028716.1_1648855_1650079_+	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|72aa|up_0|NZ_CP028716.1_1650081_1650297_+	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|287aa|down_0|NZ_CP028716.1_1650519_1651380_-	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|352aa|down_1|NZ_CP028716.1_1651539_1652595_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|151aa|down_2|NZ_CP028716.1_1652597_1653050_+	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|486aa|down_3|NZ_CP028716.1_1653092_1654550_-	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|153aa|down_4|NZ_CP028716.1_1654807_1655266_+	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|415aa|down_5|NZ_CP028716.1_1655371_1656616_+	PRK05077, frsA, esterase FrsA	NA|133aa|down_6|NZ_CP028716.1_1656673_1657072_+	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|231aa|down_7|NZ_CP028716.1_1657157_1657850_-	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|467aa|down_8|NZ_CP028716.1_1657895_1659296_-	PRK10197, PRK10197, GABA permease	NA|428aa|down_9|NZ_CP028716.1_1659431_1660715_-	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase
GCF_003054385.1_ASM305438v1	NZ_CP028716	Klebsiella pneumoniae strain SCM96 chromosome, complete genome	2	2085197-2085355	1	PILER-CR	no		cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,RT	Orphan	GTAGGCCGGGCAAGCGCAGCGCCGCCCGGCAAAGAGTGCAGG	42	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,RT	NA,NA	NA|312aa|up_9|NZ_CP028716.1_2071074_2072010_+	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]	NA|208aa|up_8|NZ_CP028716.1_2072061_2072685_-	PRK10251, PRK10251, enterobactin synthase subunit EntD	NA|743aa|up_7|NZ_CP028716.1_2072751_2074980_-	PRK13524, PRK13524, FepA family TonB-dependent siderophore receptor	NA|403aa|up_6|NZ_CP028716.1_2075239_2076448_+	PRK10439, PRK10439, enterobactin/ferric enterobactin esterase; Provisional	NA|68aa|up_5|NZ_CP028716.1_2076475_2076679_+	COG3251, COG3251, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1294aa|up_4|NZ_CP028716.1_2076689_2080571_+	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF	NA|265aa|up_3|NZ_CP028716.1_2080635_2081430_-	PRK10253, PRK10253, iron-enterobactin ABC transporter ATP-binding protein	NA|330aa|up_2|NZ_CP028716.1_2081426_2082416_-	PRK10440, PRK10440, iron-enterobactin ABC transporter permease	NA|336aa|up_1|NZ_CP028716.1_2082415_2083423_-	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease	NA|414aa|up_0|NZ_CP028716.1_2083535_2084777_+	PRK10489, PRK10489, enterobactin transporter EntS	NA|320aa|down_0|NZ_CP028716.1_2085386_2086346_-	PRK10957, PRK10957, iron-enterobactin transporter periplasmic binding protein; Provisional	NA|392aa|down_1|NZ_CP028716.1_2086534_2087710_+	PRK15016, PRK15016, isochorismate synthase EntC; Provisional	NA|536aa|down_2|NZ_CP028716.1_2087719_2089327_+	PRK10946, entE, (2,3-dihydroxybenzoyl)adenylate synthase	NA|284aa|down_3|NZ_CP028716.1_2089340_2090192_+	COG1535, EntB, Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|252aa|down_4|NZ_CP028716.1_2090191_2090947_+	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	NA|138aa|down_5|NZ_CP028716.1_2090947_2091361_+	PRK10254, PRK10254, proofreading thioesterase EntH	NA|702aa|down_6|NZ_CP028716.1_2091717_2093823_+	PRK15015, PRK15015, carbon starvation protein CstA	NA|66aa|down_7|NZ_CP028716.1_2093927_2094125_+	COG2879, COG2879, Uncharacterized small protein [Function unknown]	NA|101aa|down_8|NZ_CP028716.1_2094500_2094803_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|248aa|down_9|NZ_CP028716.1_2094986_2095730_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
GCF_003054385.1_ASM305438v1	NZ_CP028716	Klebsiella pneumoniae strain SCM96 chromosome, complete genome	3	3715328-3715973	2,1,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3	cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,RT	Type I-E	GAAACACCCCCACGTGCGTGGGGAAGAC,AGAAACACCCCCACGTGCGTGGGGAAGACN,GAAACACCCCCACGTGCGTGGGGAAGAC	28,30,28	2	2	3715425-3715457|3715425-3715456	NZ_CP028717.1_60026-60058|NZ_CP028717.1_60026-60057	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	10,10,9	10	TypeI-E	cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,RT	NA,NA	NA|77aa|up_9|NZ_CP028716.1_3706077_3706308_-	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]	NA|246aa|up_8|NZ_CP028716.1_3706304_3707042_-	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|220aa|up_7|NZ_CP028716.1_3707091_3707751_-	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|208aa|up_6|NZ_CP028716.1_3707747_3708371_-	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|446aa|up_5|NZ_CP028716.1_3708454_3709792_-	pfam00034, Cytochrom_C, Cytochrome c	NA|595aa|up_4|NZ_CP028716.1_3709805_3711590_-	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|251aa|up_3|NZ_CP028716.1_3711592_3712345_-	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|124aa|up_2|NZ_CP028716.1_3712849_3713221_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|228aa|up_1|NZ_CP028716.1_3713281_3713965_-	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|372aa|up_0|NZ_CP028716.1_3713975_3715091_-	PHA02053, PHA02053, hypothetical protein	cas2|96aa|down_0|NZ_CP028716.1_3716020_3716308_-	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	cas1|292aa|down_1|NZ_CP028716.1_3716285_3717161_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|232aa|down_2|NZ_CP028716.1_3717160_3717856_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|345aa|down_3|NZ_CP028716.1_3717889_3718924_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|216aa|down_4|NZ_CP028716.1_3718953_3719601_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|189aa|down_5|NZ_CP028716.1_3719593_3720160_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|down_6|NZ_CP028716.1_3720171_3721695_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|872aa|down_7|NZ_CP028716.1_3721698_3724314_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|357aa|down_8|NZ_CP028716.1_3725556_3726627_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|590aa|down_9|NZ_CP028716.1_3726619_3728389_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
GCF_003054385.1_ASM305438v1	NZ_CP028716	Klebsiella pneumoniae strain SCM96 chromosome, complete genome	4	3724726-3725304	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3	cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,RT	Type I-E	AGAAACACCCCCACGCGTGTGGGGAAGAC,GAAACACCCCCACGCGTGTGGGGAAGAC,GAAACACCCCCACGCGTGTGGGGAAGAC	29,28,28	2	2	3724816-3724847|3724816-3724848	NZ_CP028717.1_87114-87083|NZ_CP028717.1_87114-87082	I-E,II-B:I-E,II-B:I-E,II-B	9,9,6	9	TypeI-E	cas3,DEDDh,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,RT	NA,NA	NA|228aa|up_9|NZ_CP028716.1_3713281_3713965_-	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|372aa|up_8|NZ_CP028716.1_3713975_3715091_-	PHA02053, PHA02053, hypothetical protein	cas2|96aa|up_7|NZ_CP028716.1_3716020_3716308_-	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	cas1|292aa|up_6|NZ_CP028716.1_3716285_3717161_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|232aa|up_5|NZ_CP028716.1_3717160_3717856_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|345aa|up_4|NZ_CP028716.1_3717889_3718924_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|216aa|up_3|NZ_CP028716.1_3718953_3719601_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|189aa|up_2|NZ_CP028716.1_3719593_3720160_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|up_1|NZ_CP028716.1_3720171_3721695_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|872aa|up_0|NZ_CP028716.1_3721698_3724314_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|357aa|down_0|NZ_CP028716.1_3725556_3726627_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|590aa|down_1|NZ_CP028716.1_3726619_3728389_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|363aa|down_2|NZ_CP028716.1_3728462_3729551_-	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|360aa|down_3|NZ_CP028716.1_3729853_3730933_+	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|717aa|down_4|NZ_CP028716.1_3731179_3733330_+	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|386aa|down_5|NZ_CP028716.1_3733372_3734530_-	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|400aa|down_6|NZ_CP028716.1_3734825_3736025_+	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|145aa|down_7|NZ_CP028716.1_3736140_3736575_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|411aa|down_8|NZ_CP028716.1_3737140_3738373_+	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|131aa|down_9|NZ_CP028716.1_3738409_3738802_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family
