assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003043895.1_ASM304389v1	NZ_CP025568	Listeria monocytogenes strain PIR00540 chromosome, complete genome	1	164615-164725	1	CRISPRCasFinder	no		csa3,WYL,casR,cas3,DEDDh,DinG	Orphan	TTTTGAAAGTTCTGGGAAGGATTAAATCATCGCT	34	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,casR,cas3,DEDDh,DinG	NA|214aa|up_5|NZ_CP025568.1_160314_160956_+,NA|52aa|up_4|NZ_CP025568.1_161527_161683_-,NA|74aa|up_2|NZ_CP025568.1_163623_163845_+,NA	NA|580aa|up_9|NZ_CP025568.1_154178_155918_+	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|316aa|up_8|NZ_CP025568.1_156058_157006_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|313aa|up_7|NZ_CP025568.1_157048_157987_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|505aa|up_6|NZ_CP025568.1_158102_159617_+	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|214aa|up_5|NZ_CP025568.1_160314_160956_+	NA	NA|52aa|up_4|NZ_CP025568.1_161527_161683_-	NA	NA|455aa|up_3|NZ_CP025568.1_162124_163489_+	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|74aa|up_2|NZ_CP025568.1_163623_163845_+	NA	NA|61aa|up_1|NZ_CP025568.1_163847_164030_+	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|155aa|up_0|NZ_CP025568.1_164047_164512_+	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|580aa|down_0|NZ_CP025568.1_164838_166578_+	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|106aa|down_1|NZ_CP025568.1_166607_166925_+	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|199aa|down_2|NZ_CP025568.1_167033_167630_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|82aa|down_3|NZ_CP025568.1_167644_167890_+	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|281aa|down_4|NZ_CP025568.1_167935_168778_-	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|280aa|down_5|NZ_CP025568.1_168898_169738_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|284aa|down_6|NZ_CP025568.1_169856_170708_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|125aa|down_7|NZ_CP025568.1_170813_171188_-	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|199aa|down_8|NZ_CP025568.1_171191_171788_-	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|330aa|down_9|NZ_CP025568.1_171809_172799_-	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional
GCF_003043895.1_ASM304389v1	NZ_CP025568	Listeria monocytogenes strain PIR00540 chromosome, complete genome	2	531259-531843	1	CRT	no		csa3,WYL,casR,cas3,DEDDh,DinG	Orphan	GATGTAAGTNATTTTGATACNAGTTCAGTAACTNATATG	39	0	0	NA	NA	NA	7	7	Orphan	csa3,WYL,casR,cas3,DEDDh,DinG	NA,NA|158aa|down_0|NZ_CP025568.1_532736_533210_+,NA|162aa|down_1|NZ_CP025568.1_533229_533715_+,NA|89aa|down_3|NZ_CP025568.1_534123_534390_+,NA|55aa|down_4|NZ_CP025568.1_534628_534793_+,NA|79aa|down_5|NZ_CP025568.1_534854_535091_-,NA|108aa|down_7|NZ_CP025568.1_537104_537428_+,NA|102aa|down_8|NZ_CP025568.1_537402_537708_+	NA|222aa|up_9|NZ_CP025568.1_516364_517030_-	COG3619, COG3619, Predicted membrane protein [Function unknown]	NA|252aa|up_8|NZ_CP025568.1_517050_517806_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_7|NZ_CP025568.1_517923_520083_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_6|NZ_CP025568.1_520079_521228_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_5|NZ_CP025568.1_521232_522180_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_4|NZ_CP025568.1_522335_523931_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_3|NZ_CP025568.1_524064_525348_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_2|NZ_CP025568.1_525348_526449_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_1|NZ_CP025568.1_526441_527992_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_0|NZ_CP025568.1_528811_530350_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|158aa|down_0|NZ_CP025568.1_532736_533210_+	NA	NA|162aa|down_1|NZ_CP025568.1_533229_533715_+	NA	NA|102aa|down_2|NZ_CP025568.1_533742_534048_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_3|NZ_CP025568.1_534123_534390_+	NA	NA|55aa|down_4|NZ_CP025568.1_534628_534793_+	NA	NA|79aa|down_5|NZ_CP025568.1_534854_535091_-	NA	NA|577aa|down_6|NZ_CP025568.1_535329_537060_+	pfam14280, DUF4365, Domain of unknown function (DUF4365)	NA|108aa|down_7|NZ_CP025568.1_537104_537428_+	NA	NA|102aa|down_8|NZ_CP025568.1_537402_537708_+	NA	NA|306aa|down_9|NZ_CP025568.1_537736_538654_+	pfam14253, AbiH, Bacteriophage abortive infection AbiH
GCF_003043895.1_ASM304389v1	NZ_CP025568	Listeria monocytogenes strain PIR00540 chromosome, complete genome	3	576808-577096	1,2,2	PILER-CR,CRISPRCasFinder,CRT	no		csa3,WYL,casR,cas3,DEDDh,DinG	Orphan	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	4,4,4	4	Orphan	csa3,WYL,casR,cas3,DEDDh,DinG	NA|133aa|up_5|NZ_CP025568.1_571797_572196_+,NA|193aa|down_0|NZ_CP025568.1_577355_577934_+	NA|223aa|up_9|NZ_CP025568.1_567183_567852_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|217aa|up_8|NZ_CP025568.1_567858_568509_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|201aa|up_7|NZ_CP025568.1_570683_571286_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP025568.1_571313_571781_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP025568.1_571797_572196_+	NA	NA|217aa|up_4|NZ_CP025568.1_572206_572857_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP025568.1_572853_573900_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP025568.1_573915_574209_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP025568.1_574223_575495_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP025568.1_575634_576570_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_CP025568.1_577355_577934_+	NA	NA|227aa|down_1|NZ_CP025568.1_578041_578722_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP025568.1_578746_579106_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP025568.1_579112_579571_-	pfam12802, MarR_2, MarR family	NA|606aa|down_4|NZ_CP025568.1_579952_581770_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_CP025568.1_581870_582302_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NZ_CP025568.1_582348_583779_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NZ_CP025568.1_583899_584715_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|123aa|down_8|NZ_CP025568.1_584995_585364_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_9|NZ_CP025568.1_585510_586926_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCF_003043895.1_ASM304389v1	NZ_CP025568	Listeria monocytogenes strain PIR00540 chromosome, complete genome	4	2816691-2816842	3	CRISPRCasFinder	no	cas3	csa3,WYL,casR,cas3,DEDDh,DinG	Unclear	GAGCTCGGTTCCGATGTAGCAGGAGCATTAAAACCAAGAAGCATTGG	47	0	0	NA	NA	NA	1	1	Unclear	csa3,WYL,casR,cas3,DEDDh,DinG	NA,NA	cas3|1180aa|up_9|NZ_CP025568.1_2805815_2809355_-	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|187aa|up_8|NZ_CP025568.1_2809469_2810030_-	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|195aa|up_7|NZ_CP025568.1_2810136_2810721_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|208aa|up_6|NZ_CP025568.1_2810810_2811434_-	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|314aa|up_5|NZ_CP025568.1_2811727_2812669_+	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|225aa|up_4|NZ_CP025568.1_2812745_2813420_+	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|111aa|up_3|NZ_CP025568.1_2813486_2813819_+	PRK01119, PRK01119, putative heavy metal-binding protein	NA|154aa|up_2|NZ_CP025568.1_2813869_2814331_-	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|108aa|up_1|NZ_CP025568.1_2814465_2814789_-	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|290aa|up_0|NZ_CP025568.1_2814860_2815730_-	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|511aa|down_0|NZ_CP025568.1_2817883_2819416_-	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|530aa|down_1|NZ_CP025568.1_2819746_2821336_-	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|318aa|down_2|NZ_CP025568.1_2821577_2822531_+	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|238aa|down_3|NZ_CP025568.1_2822801_2823515_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|319aa|down_4|NZ_CP025568.1_2823557_2824514_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|458aa|down_5|NZ_CP025568.1_2824564_2825938_-	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|103aa|down_6|NZ_CP025568.1_2826324_2826633_-	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|down_7|NZ_CP025568.1_2826752_2827061_-	PRK13259, PRK13259, septation regulator SpoVG	NA|403aa|down_8|NZ_CP025568.1_2827745_2828954_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|231aa|down_9|NZ_CP025568.1_2828950_2829643_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein
