The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025565	Listeria monocytogenes strain PIR00544 chromosome, complete genome	2996364	130449	136976	2996364	tail	Listeria_phage(33.33%)	10	NA	NA
WP_003728215.1|130449_130902_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
WP_003721740.1|130907_131243_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003724946.1|131459_131888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003728213.1|131899_132316_+	hypothetical protein	NA	A8ASQ1	Listeria_phage	37.9	3.2e-19
WP_003728212.1|132595_132985_+	DUF5072 domain-containing protein	NA	NA	NA	NA	NA
WP_003721744.1|132997_133510_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
WP_003721745.1|133557_133860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003740367.1|133901_134306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003731178.1|134292_136161_+	membrane protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
WP_003734720.1|136157_136976_+|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	7.2e-39
>prophage 2
NZ_CP025565	Listeria monocytogenes strain PIR00544 chromosome, complete genome	2996364	1265325	1300831	2996364	tRNA,protease,transposase	Streptococcus_phage(30.0%)	37	NA	NA
WP_003735019.1|1265325_1266723_-|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	50.0	1.2e-118
WP_003726046.1|1266845_1267106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003726047.1|1267229_1268642_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.0	4.9e-51
WP_003726048.1|1268666_1268930_+	DUF3116 domain-containing protein	NA	NA	NA	NA	NA
WP_003726049.1|1269097_1269574_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
WP_003726050.1|1269611_1269857_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003726051.1|1269853_1271059_-	MFS transporter	NA	NA	NA	NA	NA
WP_003726052.1|1271263_1271923_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_003726053.1|1271962_1272157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003726054.1|1272223_1273072_-	YitT family protein	NA	NA	NA	NA	NA
WP_003726055.1|1273690_1274404_+	trehalose operon repressor	NA	NA	NA	NA	NA
WP_003726056.1|1274434_1276081_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
WP_003727531.1|1276099_1277584_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA	NA
WP_003726723.1|1277701_1278163_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003726717.1|1278201_1278666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003734526.1|1278854_1279769_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003734525.1|1279794_1281042_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	52.0	2.7e-106
WP_003734524.1|1281025_1281856_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.4	3.6e-46
WP_003734523.1|1282002_1283142_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003723563.1|1283221_1283617_-	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_003727524.1|1283767_1283983_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003727523.1|1284106_1284640_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_003731300.1|1284655_1285321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003727521.1|1285582_1286521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003723884.1|1286635_1287919_+	trigger factor	NA	NA	NA	NA	NA
WP_003723886.1|1288103_1289363_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
WP_069002568.1|1289481_1290048_+	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_003726394.1|1290082_1290652_+	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003727520.1|1290753_1291296_+	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003726396.1|1291305_1292169_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_003727519.1|1292165_1292951_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	37.6	6.7e-26
WP_003727518.1|1293084_1293945_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_003727517.1|1294217_1296296_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.5	5.4e-107
WP_003727516.1|1296358_1297663_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_003731303.1|1297945_1298848_+	tyrosine recombinase XerC	NA	A0A142K7N4	Mycobacterium_phage	29.5	1.8e-14
WP_003724001.1|1298868_1299408_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003727514.1|1299421_1300831_+|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	27.8	7.5e-44
>prophage 3
NZ_CP025565	Listeria monocytogenes strain PIR00544 chromosome, complete genome	2996364	1831811	1840097	2996364		Synechococcus_phage(33.33%)	8	NA	NA
WP_003726209.1|1831811_1832378_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.4	8.3e-26
WP_003726210.1|1832374_1833424_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.4	3.2e-63
WP_003722245.1|1833442_1834870_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
WP_069002589.1|1834854_1837074_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.8	6.5e-159
WP_003734638.1|1837066_1837750_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003722248.1|1837753_1837999_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_003734637.1|1838010_1838724_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	6.7e-41
WP_003726215.1|1838804_1840097_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.0	2.5e-17
>prophage 4
NZ_CP025565	Listeria monocytogenes strain PIR00544 chromosome, complete genome	2996364	2406079	2448884	2996364	coat,portal,capsid,terminase,tail,plate,holin	Listeria_phage(93.55%)	68	NA	NA
WP_003725136.1|2406079_2406313_-	hypothetical protein	NA	A8ATC5	Listeria_phage	92.2	1.2e-34
WP_003734985.1|2406545_2406938_-	hypothetical protein	NA	A8ATC1	Listeria_phage	100.0	5.1e-67
WP_015987299.1|2406934_2407438_-	DUF4065 domain-containing protein	NA	A8ATC0	Listeria_phage	100.0	7.0e-93
WP_003734987.1|2407840_2408767_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	R4ICC5	Listeria_phage	92.2	9.9e-170
WP_031644824.1|2408768_2409002_-	hypothetical protein	NA	R4IBI3	Listeria_phage	92.2	1.7e-33
WP_031644822.1|2408998_2409283_-|holin	holin	holin	R4IDW2	Listeria_phage	98.9	5.7e-44
WP_003725053.1|2409295_2409661_-	hypothetical protein	NA	A8ASL3	Listeria_phage	100.0	1.3e-11
WP_096811323.1|2409697_2409856_-	hypothetical protein	NA	Q9T1A1	Listeria_phage	76.9	7.1e-12
WP_050897660.1|2409860_2410139_-	hypothetical protein	NA	A8ATB3	Listeria_phage	55.7	2.9e-16
WP_107681204.1|2410135_2411212_-|plate	phage baseplate upper protein	plate	Q9T1A3	Listeria_phage	75.5	6.9e-90
WP_107681205.1|2411208_2412243_-	hypothetical protein	NA	Q9T1A4	Listeria_phage	77.6	3.1e-148
WP_107681206.1|2412243_2413269_-	hypothetical protein	NA	Q9T1A5	Listeria_phage	90.6	6.4e-186
WP_107681207.1|2413277_2414096_-|tail	phage tail family protein	tail	Q9T1A6	Listeria_phage	90.8	9.8e-145
WP_107681208.1|2414097_2419461_-	tape measure protein	NA	A8ASK6	Listeria_phage	90.7	0.0e+00
WP_010990224.1|2419471_2420074_-	hypothetical protein	NA	A8ASK5	Listeria_phage	100.0	3.7e-109
WP_003769943.1|2420079_2420502_-	hypothetical protein	NA	Q9T1A9	Listeria_phage	97.9	5.9e-69
WP_045552940.1|2420554_2420887_-	Ig-like virion protein	NA	Q9T1B0	Listeria_phage	70.9	1.5e-30
WP_107681209.1|2420816_2421251_-|tail	phage tail protein	tail	Q9T1B1	Listeria_phage	97.2	3.0e-76
WP_003737937.1|2421253_2421661_-	hypothetical protein	NA	A8ASK1	Listeria_phage	99.3	2.0e-66
WP_029508830.1|2421660_2421999_-	hypothetical protein	NA	A0A0B5CTV8	Listeria_phage	95.5	5.4e-57
WP_107681210.1|2421998_2422361_-|capsid	minor capsid protein	capsid	A8ASJ9	Listeria_phage	93.3	2.1e-59
WP_107681211.1|2422360_2422756_-	hypothetical protein	NA	A0A059T5E3	Listeria_phage	96.2	1.1e-64
WP_107681212.1|2422774_2423776_-|coat	coat protein	coat	A0A059T6D4	Listeria_phage	99.4	6.3e-186
WP_003734944.1|2423775_2424366_-	scaffold protein	NA	A0A059T7N8	Listeria_phage	100.0	2.5e-86
WP_107681213.1|2424444_2425584_-|capsid	minor capsid protein	capsid	A0A059T7W2	Listeria_phage	99.7	6.6e-208
WP_107681214.1|2425589_2427080_-|portal	phage portal protein	portal	A0A0B5D0F2	Listeria_phage	99.0	2.4e-282
WP_107681215.1|2427092_2428424_-|terminase	PBSX family phage terminase large subunit	terminase	A8ASJ2	Listeria_phage	98.2	4.3e-259
WP_107681216.1|2428392_2428935_-|terminase	terminase small subunit	terminase	A8ASJ1	Listeria_phage	97.2	7.8e-90
WP_031670222.1|2428974_2429274_-	hypothetical protein	NA	A0A2H4JBC0	uncultured_Caudovirales_phage	40.7	3.8e-14
WP_003743388.1|2429838_2430273_-	hypothetical protein	NA	A8ASQ1	Listeria_phage	98.6	9.6e-75
WP_003727776.1|2430291_2430456_-	hypothetical protein	NA	A8ASQ0	Listeria_phage	92.6	2.5e-20
WP_107681217.1|2430584_2430968_-	DUF2481 domain-containing protein	NA	A8ASP8	Listeria_phage	96.1	7.4e-63
WP_031541233.1|2430971_2431376_-	DUF1064 domain-containing protein	NA	A8ASP7	Listeria_phage	94.0	5.4e-64
WP_107681218.1|2431320_2431512_-	hypothetical protein	NA	A8ASP6	Listeria_phage	93.7	2.6e-24
WP_003743379.1|2431530_2432013_-	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	90.0	2.4e-74
WP_003743377.1|2432012_2432414_-	hypothetical protein	NA	A8ATZ6	Listeria_phage	83.5	1.3e-54
WP_003743375.1|2432424_2432652_-	DUF3850 domain-containing protein	NA	A0A059T7N3	Listeria_phage	96.0	1.9e-34
WP_003743374.1|2432652_2432838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003735013.1|2432837_2433128_-	hypothetical protein	NA	Q8W5X0	Listeria_phage	90.6	5.0e-43
WP_003735014.1|2433124_2433310_-	hypothetical protein	NA	A0A059T5G1	Listeria_phage	98.4	1.2e-26
WP_003735015.1|2433306_2433576_-	hypothetical protein	NA	A0A059T7S7	Listeria_phage	89.5	5.8e-38
WP_003743371.1|2433588_2434290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003743369.1|2434289_2434793_-	hypothetical protein	NA	A0A0B5CYR4	Listeria_phage	44.8	9.3e-29
WP_003735032.1|2434971_2435151_-	hypothetical protein	NA	A0A059T5G0	Listeria_phage	93.2	3.5e-23
WP_107681219.1|2435147_2435777_-	DUF1642 domain-containing protein	NA	A8ATY9	Listeria_phage	53.1	7.0e-50
WP_023546290.1|2435779_2436010_-	hypothetical protein	NA	A0A059T7Z5	Listeria_phage	96.1	3.8e-38
WP_107681220.1|2436006_2437269_-	DNA (cytosine-5-)-methyltransferase	NA	A0A141E1L1	Streptococcus_phage	55.5	2.5e-123
WP_045553719.1|2437265_2438180_-	DnaD domain-containing protein	NA	A0A0B5D175	Listeria_phage	89.2	5.2e-139
WP_045553720.1|2438199_2439015_-	recombinase RecT	NA	A8ATY6	Listeria_phage	98.5	1.0e-149
WP_010990195.1|2439014_2439974_-	YqaJ viral recombinase family protein	NA	A8ATY5	Listeria_phage	98.1	8.1e-175
WP_003734954.1|2440206_2440395_-	hypothetical protein	NA	A0A0B5CU43	Listeria_phage	100.0	4.5e-29
WP_003727752.1|2440503_2440719_-	hypothetical protein	NA	Q9T176	Listeria_phage	90.1	1.8e-26
WP_003735000.1|2440715_2441249_-	hypothetical protein	NA	A8ATY1	Listeria_phage	87.9	1.8e-78
WP_069007990.1|2441371_2442148_-	antirepressor	NA	A0A0B5D0I2	Listeria_phage	95.3	2.7e-136
WP_003731223.1|2442211_2442754_+	hypothetical protein	NA	A8ATX9	Listeria_phage	100.0	2.8e-95
WP_107681221.1|2442731_2443085_-	hypothetical protein	NA	A8ATX8	Listeria_phage	93.2	1.8e-50
WP_107681222.1|2443081_2443318_-	hypothetical protein	NA	A0A059T5E9	Listeria_phage	97.4	4.8e-36
WP_014931716.1|2443382_2443742_+	DUF2513 domain-containing protein	NA	A0A2H4J4K9	uncultured_Caudovirales_phage	26.3	2.1e-06
WP_107681223.1|2443700_2443895_-	hypothetical protein	NA	A0A059T6E5	Listeria_phage	95.3	4.1e-25
WP_107681224.1|2444118_2444385_-	hypothetical protein	NA	A0A059T7Q1	Listeria_phage	97.7	4.7e-40
WP_003759640.1|2444403_2444688_-	hypothetical protein	NA	A0A0B5D168	Listeria_phage	83.0	8.0e-38
WP_107681225.1|2444707_2444908_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_107681226.1|2445079_2445565_+	helix-turn-helix transcriptional regulator	NA	A8ASM2	Listeria_phage	61.2	8.0e-38
WP_107681227.1|2445721_2445889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_107681228.1|2445943_2446594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_107681229.1|2446656_2448015_+	recombinase family protein	NA	Q9T193	Listeria_phage	97.6	3.6e-253
WP_003734805.1|2448005_2448482_+	competence protein ComK	NA	NA	NA	NA	NA
WP_003739618.1|2448536_2448884_-	helix-turn-helix transcriptional regulator	NA	A0A0A7RTK4	Clostridium_phage	40.7	9.9e-06
>prophage 5
NZ_CP025565	Listeria monocytogenes strain PIR00544 chromosome, complete genome	2996364	2606022	2613867	2996364		Streptococcus_phage(50.0%)	7	NA	NA
WP_003725407.1|2606022_2606994_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
WP_003734495.1|2607001_2607970_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.6	1.8e-68
WP_003722606.1|2607971_2608847_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	1.9e-08
WP_107681231.1|2608954_2610685_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.3	7.3e-174
WP_003741152.1|2610726_2611788_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_003725411.1|2611804_2612788_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	38.1	4.0e-52
WP_003722610.1|2612907_2613867_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
