assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003031955.1_ASM303195v1	NZ_CP025222	Listeria monocytogenes strain ATCC 51775 chromosome, complete genome	1	210465-210616	1	CRISPRCasFinder	no	cas3	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	Unclear	CCAATGCTTCTTGGTTTTAATGCTCCTGCTACATCAGAACCGAGCTC	47	0	0	NA	NA	NA	1	1	Unclear	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	NA,NA	NA|231aa|up_9|NZ_CP025222.1_197663_198356_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|403aa|up_8|NZ_CP025222.1_198352_199561_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|103aa|up_7|NZ_CP025222.1_200245_200554_+	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|up_6|NZ_CP025222.1_200673_200982_+	PRK13259, PRK13259, septation regulator SpoVG	NA|458aa|up_5|NZ_CP025222.1_201368_202742_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|319aa|up_4|NZ_CP025222.1_202792_203749_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|238aa|up_3|NZ_CP025222.1_203791_204505_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|318aa|up_2|NZ_CP025222.1_204775_205729_-	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|530aa|up_1|NZ_CP025222.1_205970_207560_+	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|511aa|up_0|NZ_CP025222.1_207890_209423_+	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|290aa|down_0|NZ_CP025222.1_211576_212446_+	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|108aa|down_1|NZ_CP025222.1_212517_212841_+	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|154aa|down_2|NZ_CP025222.1_212975_213437_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_3|NZ_CP025222.1_213487_213820_-	PRK01119, PRK01119, putative heavy metal-binding protein	NA|225aa|down_4|NZ_CP025222.1_213886_214561_-	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|314aa|down_5|NZ_CP025222.1_214637_215579_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|208aa|down_6|NZ_CP025222.1_215872_216496_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|195aa|down_7|NZ_CP025222.1_216585_217170_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|187aa|down_8|NZ_CP025222.1_217276_217837_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1180aa|down_9|NZ_CP025222.1_217951_221491_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
GCF_003031955.1_ASM303195v1	NZ_CP025222	Listeria monocytogenes strain ATCC 51775 chromosome, complete genome	2	518019-518603	1	CRT	no		csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	Orphan	GATGTAAGTNATTTTGATACNAGTTCAGTAACTNATATG	39	2	2	518214-518252|518448-518486	NZ_CP025222.1_516009-516047|NZ_CP025222.1_516243-516281	NA	7	7	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	NA,NA|158aa|down_0|NZ_CP025222.1_519496_519970_+,NA|162aa|down_1|NZ_CP025222.1_519989_520475_+,NA|89aa|down_3|NZ_CP025222.1_520880_521147_+,NA|123aa|down_5|NZ_CP025222.1_521972_522341_+,NA|91aa|down_7|NZ_CP025222.1_523735_524008_+,NA|116aa|down_8|NZ_CP025222.1_524035_524383_+,NA|81aa|down_9|NZ_CP025222.1_524786_525029_+	NA|252aa|up_9|NZ_CP025222.1_501606_502362_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_8|NZ_CP025222.1_502479_504639_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_7|NZ_CP025222.1_504635_505784_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_6|NZ_CP025222.1_505788_506736_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_5|NZ_CP025222.1_506891_508487_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_4|NZ_CP025222.1_508621_509905_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_3|NZ_CP025222.1_509905_511006_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_2|NZ_CP025222.1_510998_512549_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_1|NZ_CP025222.1_513368_514907_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|690aa|up_0|NZ_CP025222.1_515156_517226_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|158aa|down_0|NZ_CP025222.1_519496_519970_+	NA	NA|162aa|down_1|NZ_CP025222.1_519989_520475_+	NA	NA|102aa|down_2|NZ_CP025222.1_520502_520808_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_3|NZ_CP025222.1_520880_521147_+	NA	NA|95aa|down_4|NZ_CP025222.1_521687_521972_+	pfam11328, DUF3130, Protein of unknown function (DUF3130	NA|123aa|down_5|NZ_CP025222.1_521972_522341_+	NA	NA|459aa|down_6|NZ_CP025222.1_522337_523714_+	pfam04740, LXG, LXG domain of WXG superfamily	NA|91aa|down_7|NZ_CP025222.1_523735_524008_+	NA	NA|116aa|down_8|NZ_CP025222.1_524035_524383_+	NA	NA|81aa|down_9|NZ_CP025222.1_524786_525029_+	NA
GCF_003031955.1_ASM303195v1	NZ_CP025222	Listeria monocytogenes strain ATCC 51775 chromosome, complete genome	3	2568005-2568166	2	CRISPRCasFinder	no	WYL	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	Unclear	TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG	55	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	NA|140aa|up_7|NZ_CP025222.1_2553295_2553715_-,NA|58aa|down_3|NZ_CP025222.1_2570351_2570525_-	WYL|299aa|up_9|NZ_CP025222.1_2551609_2552506_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|190aa|up_8|NZ_CP025222.1_2552550_2553120_-	cd06259, YdcF-like, YdcF-like	NA|140aa|up_7|NZ_CP025222.1_2553295_2553715_-	NA	NA|1311aa|up_6|NZ_CP025222.1_2554664_2558597_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|315aa|up_5|NZ_CP025222.1_2558611_2559556_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|1092aa|up_4|NZ_CP025222.1_2559615_2562891_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|303aa|up_3|NZ_CP025222.1_2563272_2564181_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|155aa|up_2|NZ_CP025222.1_2564236_2564701_-	pfam01668, SmpB, SmpB protein	NA|794aa|up_1|NZ_CP025222.1_2564716_2567098_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|249aa|up_0|NZ_CP025222.1_2567131_2567878_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|down_0|NZ_CP025222.1_2568240_2568474_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|248aa|down_1|NZ_CP025222.1_2568573_2569317_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|240aa|down_2|NZ_CP025222.1_2569499_2570219_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|58aa|down_3|NZ_CP025222.1_2570351_2570525_-	NA	NA|431aa|down_4|NZ_CP025222.1_2570627_2571920_-	PRK00077, eno, enolase; Provisional	NA|511aa|down_5|NZ_CP025222.1_2572055_2573588_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|252aa|down_6|NZ_CP025222.1_2573589_2574345_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|down_7|NZ_CP025222.1_2574390_2575581_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|down_8|NZ_CP025222.1_2575715_2576726_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|349aa|down_9|NZ_CP025222.1_2576759_2577806_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
GCF_003031955.1_ASM303195v1	NZ_CP025222	Listeria monocytogenes strain ATCC 51775 chromosome, complete genome	4	2729435-2730461	3,2,1,2	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	Type II-B,Type II-A,Type II-C	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	36,36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B:II-A,II-B	15,15,14,14	15	TypeII-B,TypeII-A,TypeII-C	csa3,DinG,cas3,WYL,casR,DEDDh,csn2,cas2,cas1,cas9	NA|216aa|up_5|NZ_CP025222.1_2717019_2717667_-,NA|121aa|up_0|NZ_CP025222.1_2728546_2728909_-,NA|163aa|down_4|NZ_CP025222.1_2736976_2737465_-	NA|996aa|up_9|NZ_CP025222.1_2710076_2713064_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|281aa|up_8|NZ_CP025222.1_2713561_2714404_+	COG1912, COG1912, Uncharacterized conserved protein [Function unknown]	NA|494aa|up_7|NZ_CP025222.1_2714451_2715933_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|296aa|up_6|NZ_CP025222.1_2716033_2716921_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|216aa|up_5|NZ_CP025222.1_2717019_2717667_-	NA	NA|174aa|up_4|NZ_CP025222.1_2717682_2718204_-	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily	NA|343aa|up_3|NZ_CP025222.1_2724263_2725292_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_2|NZ_CP025222.1_2725560_2727087_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|141aa|up_1|NZ_CP025222.1_2728001_2728424_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|121aa|up_0|NZ_CP025222.1_2728546_2728909_-	NA	csn2|221aa|down_0|NZ_CP025222.1_2730590_2731253_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_CP025222.1_2731242_2731584_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NZ_CP025222.1_2731580_2732447_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1335aa|down_3|NZ_CP025222.1_2732447_2736452_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|163aa|down_4|NZ_CP025222.1_2736976_2737465_-	NA	NA|462aa|down_5|NZ_CP025222.1_2737474_2738860_-	pfam04740, LXG, LXG domain of WXG superfamily	NA|131aa|down_6|NZ_CP025222.1_2739151_2739544_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_7|NZ_CP025222.1_2739565_2740003_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_8|NZ_CP025222.1_2740197_2740944_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_9|NZ_CP025222.1_2740949_2741747_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]
