assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003031485.1_ASM303148v1	NZ_CP021105	Staphylococcus aureus strain CC5 chromosome, complete genome	1	153975-154059	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	3	154001-154033|154001-154033|154001-154033	NZ_CP021105.1_1307822-1307854|NZ_CP021105.1_833030-832998|NZ_CP021105.1_1396120-1396088	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|402aa|up_9|NZ_CP021105.1_143120_144326_+,NA|68aa|down_0|NZ_CP021105.1_154120_154324_-	NA|402aa|up_9|NZ_CP021105.1_143120_144326_+	NA	NA|402aa|up_8|NZ_CP021105.1_144326_145532_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NZ_CP021105.1_145542_146100_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NZ_CP021105.1_146099_146987_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NZ_CP021105.1_147040_148303_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NZ_CP021105.1_148379_149525_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NZ_CP021105.1_149589_149916_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NZ_CP021105.1_149922_150306_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NZ_CP021105.1_150732_152220_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NZ_CP021105.1_152866_153826_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NZ_CP021105.1_154120_154324_-	NA	NA|171aa|down_1|NZ_CP021105.1_154502_155015_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NZ_CP021105.1_155356_156097_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|324aa|down_3|NZ_CP021105.1_156110_157082_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NZ_CP021105.1_157078_157840_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NZ_CP021105.1_157852_158884_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NZ_CP021105.1_159100_159460_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NZ_CP021105.1_159633_160659_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NZ_CP021105.1_161044_162295_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NZ_CP021105.1_162741_169917_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_003031485.1_ASM303148v1	NZ_CP021105	Staphylococcus aureus strain CC5 chromosome, complete genome	2	393768-393869	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_9|NZ_CP021105.1_383803_384013_-,NA|128aa|up_7|NZ_CP021105.1_384837_385221_-,NA|33aa|up_1|NZ_CP021105.1_391468_391567_+,NA|221aa|down_1|NZ_CP021105.1_394959_395622_-,NA|179aa|down_7|NZ_CP021105.1_401713_402250_-	NA|70aa|up_9|NZ_CP021105.1_383803_384013_-	NA	NA|194aa|up_8|NZ_CP021105.1_384190_384772_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NZ_CP021105.1_384837_385221_-	NA	NA|209aa|up_6|NZ_CP021105.1_385490_386117_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_5|NZ_CP021105.1_386560_388084_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NZ_CP021105.1_388099_388669_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NZ_CP021105.1_389160_389916_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NZ_CP021105.1_389995_391384_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_1|NZ_CP021105.1_391468_391567_+	NA	NA|440aa|up_0|NZ_CP021105.1_392235_393555_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|319aa|down_0|NZ_CP021105.1_393885_394842_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP021105.1_394959_395622_-	NA	NA|136aa|down_2|NZ_CP021105.1_395764_396172_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP021105.1_396684_397263_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP021105.1_397262_398531_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP021105.1_398568_400035_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP021105.1_400059_401601_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP021105.1_401713_402250_-	NA	NA|235aa|down_8|NZ_CP021105.1_402641_403346_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP021105.1_403744_404017_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_003031485.1_ASM303148v1	NZ_CP021105	Staphylococcus aureus strain CC5 chromosome, complete genome	3	742721-742803	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|69aa|up_9|NZ_CP021105.1_729334_729541_+,NA|34aa|down_1|NZ_CP021105.1_744458_744560_+,NA|52aa|down_8|NZ_CP021105.1_752406_752562_+	NA|69aa|up_9|NZ_CP021105.1_729334_729541_+	NA	NA|237aa|up_8|NZ_CP021105.1_729628_730339_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP021105.1_730322_731327_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP021105.1_731800_733741_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP021105.1_734010_735894_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP021105.1_735905_737687_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP021105.1_737908_738886_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP021105.1_738878_740393_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP021105.1_740632_741691_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP021105.1_742029_742572_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP021105.1_743450_744368_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP021105.1_744458_744560_+	NA	NA|502aa|down_2|NZ_CP021105.1_744637_746143_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP021105.1_746483_746984_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP021105.1_747003_747870_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP021105.1_748670_749069_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP021105.1_749031_751137_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP021105.1_751254_752226_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP021105.1_752406_752562_+	NA	NA|324aa|down_9|NZ_CP021105.1_752600_753572_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_003031485.1_ASM303148v1	NZ_CP021105	Staphylococcus aureus strain CC5 chromosome, complete genome	4	783668-783746	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	4	783692-783722|783692-783722|783692-783722|783692-783722	NZ_CP021105.1_277203-277173|NZ_CP021105.1_277148-277118|NZ_CP021105.1_1608494-1608524|NZ_CP021105.1_1608550-1608580	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NZ_CP021105.1_774544_774649_+,NA|36aa|up_5|NZ_CP021105.1_776081_776189_+,NA	NA|191aa|up_9|NZ_CP021105.1_770985_771558_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP021105.1_771971_774503_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP021105.1_774544_774649_+	NA	NA|370aa|up_6|NZ_CP021105.1_774817_775928_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP021105.1_776081_776189_+	NA	NA|280aa|up_4|NZ_CP021105.1_776336_777176_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP021105.1_777349_778000_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP021105.1_777996_778233_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP021105.1_778501_780487_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP021105.1_780494_783341_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP021105.1_784004_784937_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP021105.1_784942_785782_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP021105.1_785789_786275_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP021105.1_786282_787722_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP021105.1_787788_788724_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP021105.1_789609_790521_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP021105.1_790517_791513_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP021105.1_791623_792568_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP021105.1_793131_793719_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP021105.1_793961_794864_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_003031485.1_ASM303148v1	NZ_CP021105	Staphylococcus aureus strain CC5 chromosome, complete genome	5	789243-789333	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTGTGTTGGGGCCCACACCCCAACTCGCATTG	33	1	15	789276-789300|789276-789300|789276-789300|789276-789300|789276-789300|789276-789300|789276-789300|789276-789300|789276-789300|789276-789300|789276-789300|789276-789300|789276-789300|789276-789300|789276-789300	NZ_CP021105.1_153983-153959|NZ_CP021105.1_277119-277095|NZ_CP021105.1_277229-277205|NZ_CP021105.1_617276-617252|NZ_CP021105.1_741762-741786|NZ_CP021105.1_789159-789183|NZ_CP021105.1_1101762-1101738|NZ_CP021105.1_1307746-1307722|NZ_CP021105.1_1574088-1574112|NZ_CP021105.1_1588643-1588619|NZ_CP021105.1_1900546-1900570|NZ_CP021105.1_277174-277150|NZ_CP021105.1_833047-833071|NZ_CP021105.1_903092-903116|NZ_CP021105.1_1608349-1608373	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|280aa|up_9|NZ_CP021105.1_776336_777176_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP021105.1_777349_778000_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP021105.1_777996_778233_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP021105.1_778501_780487_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP021105.1_780494_783341_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP021105.1_784004_784937_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP021105.1_784942_785782_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP021105.1_785789_786275_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP021105.1_786282_787722_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP021105.1_787788_788724_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP021105.1_789609_790521_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP021105.1_790517_791513_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP021105.1_791623_792568_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP021105.1_793131_793719_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP021105.1_793961_794864_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP021105.1_795566_796196_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP021105.1_797017_798031_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP021105.1_798083_799094_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP021105.1_799232_800423_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP021105.1_800544_801306_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_003031485.1_ASM303148v1	NZ_CP021105	Staphylococcus aureus strain CC5 chromosome, complete genome	6	833335-833413	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CAGCTTCTGTGTTGGGGCCCCGC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|79aa|up_9|NZ_CP021105.1_825309_825546_-,NA	NA|79aa|up_9|NZ_CP021105.1_825309_825546_-	NA	NA|194aa|up_8|NZ_CP021105.1_825770_826352_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_7|NZ_CP021105.1_826424_827042_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_6|NZ_CP021105.1_827196_827691_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_5|NZ_CP021105.1_828089_828512_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_4|NZ_CP021105.1_828659_829376_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_3|NZ_CP021105.1_829458_829998_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_2|NZ_CP021105.1_830148_830469_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_1|NZ_CP021105.1_830612_830969_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_0|NZ_CP021105.1_831126_831507_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|129aa|down_0|NZ_CP021105.1_833665_834052_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP021105.1_834044_834341_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP021105.1_834590_835616_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP021105.1_835608_836304_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP021105.1_836321_837143_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP021105.1_837496_837691_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP021105.1_837924_838776_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP021105.1_839103_839865_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP021105.1_839962_841270_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP021105.1_841375_842626_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_003031485.1_ASM303148v1	NZ_CP021105	Staphylococcus aureus strain CC5 chromosome, complete genome	7	1101746-1101826	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	AAAAGAAATTCTACAGGCAATGC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|169aa|up_9|NZ_CP021105.1_1093989_1094496_+,NA|85aa|up_6|NZ_CP021105.1_1096114_1096369_+,NA|62aa|up_5|NZ_CP021105.1_1096519_1096705_-,NA|78aa|up_4|NZ_CP021105.1_1097326_1097560_-,NA|49aa|up_1|NZ_CP021105.1_1101188_1101335_+,NA|75aa|up_0|NZ_CP021105.1_1101291_1101516_+,NA|76aa|down_6|NZ_CP021105.1_1108806_1109034_+,NA|63aa|down_8|NZ_CP021105.1_1110535_1110724_+	NA|169aa|up_9|NZ_CP021105.1_1093989_1094496_+	NA	NA|166aa|up_8|NZ_CP021105.1_1094755_1095253_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_7|NZ_CP021105.1_1095402_1095753_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|85aa|up_6|NZ_CP021105.1_1096114_1096369_+	NA	NA|62aa|up_5|NZ_CP021105.1_1096519_1096705_-	NA	NA|78aa|up_4|NZ_CP021105.1_1097326_1097560_-	NA	NA|440aa|up_3|NZ_CP021105.1_1098078_1099398_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|320aa|up_2|NZ_CP021105.1_1099556_1100516_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_CP021105.1_1101188_1101335_+	NA	NA|75aa|up_0|NZ_CP021105.1_1101291_1101516_+	NA	NA|239aa|down_0|NZ_CP021105.1_1102008_1102725_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP021105.1_1102832_1103558_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_CP021105.1_1103652_1104378_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_CP021105.1_1104815_1105817_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_CP021105.1_1105839_1106772_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|519aa|down_5|NZ_CP021105.1_1106943_1108500_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_CP021105.1_1108806_1109034_+	NA	NA|316aa|down_7|NZ_CP021105.1_1109339_1110287_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_CP021105.1_1110535_1110724_+	NA	NA|45aa|down_9|NZ_CP021105.1_1111628_1111763_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_003031485.1_ASM303148v1	NZ_CP021105	Staphylococcus aureus strain CC5 chromosome, complete genome	8	1574012-1574096	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	1574038-1574070|1574038-1574070	NZ_CP021105.1_1307854-1307822|NZ_CP021105.1_832998-833030	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NZ_CP021105.1_1563222_1563906_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP021105.1_1564149_1564326_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP021105.1_1564618_1565965_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP021105.1_1565971_1566724_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP021105.1_1566725_1567664_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP021105.1_1567667_1568807_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP021105.1_1568942_1570775_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP021105.1_1570843_1571470_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP021105.1_1571501_1572479_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP021105.1_1572578_1573703_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP021105.1_1574268_1576092_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP021105.1_1576437_1576689_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP021105.1_1576733_1577708_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NZ_CP021105.1_1577764_1579966_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP021105.1_1579970_1580432_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP021105.1_1580523_1581210_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP021105.1_1581249_1581966_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP021105.1_1581968_1582322_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP021105.1_1582322_1582907_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP021105.1_1582896_1583466_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_003031485.1_ASM303148v1	NZ_CP021105	Staphylococcus aureus strain CC5 chromosome, complete genome	9	2003066-2003147	9	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	GGCCCCCACCCCAACTTACATTGT	24	1	5	2003090-2003123|2003090-2003123|2003090-2003123|2003090-2003123|2003090-2003123	NZ_CP021105.1_783667-783700|NZ_CP021105.1_1096111-1096078|NZ_CP021105.1_1694193-1694160|NZ_CP021105.1_1312195-1312228|NZ_CP021105.1_2704999-2705032	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|114aa|up_7|NZ_CP021105.1_1994810_1995152_+,NA|61aa|up_6|NZ_CP021105.1_1995355_1995538_+,NA|81aa|up_4|NZ_CP021105.1_1996631_1996874_+,NA|114aa|down_6|NZ_CP021105.1_2010934_2011276_-,NA|193aa|down_9|NZ_CP021105.1_2012092_2012671_-	NA|238aa|up_9|NZ_CP021105.1_1993143_1993857_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	DEDDh|311aa|up_8|NZ_CP021105.1_1993872_1994805_+	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated	NA|114aa|up_7|NZ_CP021105.1_1994810_1995152_+	NA	NA|61aa|up_6|NZ_CP021105.1_1995355_1995538_+	NA	NA|328aa|up_5|NZ_CP021105.1_1995637_1996621_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|81aa|up_4|NZ_CP021105.1_1996631_1996874_+	NA	NA|346aa|up_3|NZ_CP021105.1_1996936_1997974_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NZ_CP021105.1_1999092_2000109_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP021105.1_2000130_2001186_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP021105.1_2001621_2002845_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP021105.1_2003288_2004596_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|241aa|down_1|NZ_CP021105.1_2005592_2006315_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|267aa|down_2|NZ_CP021105.1_2006483_2007284_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|187aa|down_3|NZ_CP021105.1_2008071_2008632_+	cd15783, SA1633_like, Uncharacterized protein family conserved in Staphylococci	NA|235aa|down_4|NZ_CP021105.1_2009509_2010214_+	PRK13038, PRK13038, superantigen-like protein; Reviewed	NA|190aa|down_5|NZ_CP021105.1_2010368_2010938_-	COG3728, XtmA, Phage terminase, small subunit [DNA replication, recombination, and repair]	NA|114aa|down_6|NZ_CP021105.1_2010934_2011276_-	NA	NA|176aa|down_7|NZ_CP021105.1_2011278_2011806_-	COG5577, COG5577, Spore coat protein [Cell envelope biogenesis, outer membrane]	NA|73aa|down_8|NZ_CP021105.1_2011856_2012075_-	pfam16722, SAPIS-gp6, Pathogenicity island protein gp6 in Staphylococcus	NA|193aa|down_9|NZ_CP021105.1_2012092_2012671_-	NA
GCF_003031485.1_ASM303148v1	NZ_CP021105	Staphylococcus aureus strain CC5 chromosome, complete genome	10	2143600-2143680	10	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|77aa|up_4|NZ_CP021105.1_2138103_2138334_-,NA|35aa|down_0|NZ_CP021105.1_2144015_2144120_-,NA|53aa|down_1|NZ_CP021105.1_2144799_2144958_+	NA|221aa|up_9|NZ_CP021105.1_2132738_2133401_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|237aa|up_8|NZ_CP021105.1_2133714_2134425_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_7|NZ_CP021105.1_2134545_2134989_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_6|NZ_CP021105.1_2135188_2135602_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_5|NZ_CP021105.1_2136058_2137432_-	pfam01878, EVE, EVE domain	NA|77aa|up_4|NZ_CP021105.1_2138103_2138334_-	NA	NA|313aa|up_3|NZ_CP021105.1_2138364_2139303_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_2|NZ_CP021105.1_2139738_2140404_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_1|NZ_CP021105.1_2140555_2140876_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_0|NZ_CP021105.1_2140877_2141855_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|35aa|down_0|NZ_CP021105.1_2144015_2144120_-	NA	NA|53aa|down_1|NZ_CP021105.1_2144799_2144958_+	NA	NA|286aa|down_2|NZ_CP021105.1_2145615_2146473_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP021105.1_2146540_2147323_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP021105.1_2147554_2149360_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP021105.1_2150040_2151579_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP021105.1_2151613_2153746_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP021105.1_2153757_2154192_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP021105.1_2154191_2155298_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_9|NZ_CP021105.1_2163339_2164695_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_003031485.1_ASM303148v1	NZ_CP021105	Staphylococcus aureus strain CC5 chromosome, complete genome	11	2155921-2156006	11	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_8|NZ_CP021105.1_2144015_2144120_-,NA|53aa|up_7|NZ_CP021105.1_2144799_2144958_+,NA	NA|326aa|up_9|NZ_CP021105.1_2140877_2141855_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|35aa|up_8|NZ_CP021105.1_2144015_2144120_-	NA	NA|53aa|up_7|NZ_CP021105.1_2144799_2144958_+	NA	NA|286aa|up_6|NZ_CP021105.1_2145615_2146473_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP021105.1_2146540_2147323_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP021105.1_2147554_2149360_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP021105.1_2150040_2151579_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP021105.1_2151613_2153746_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP021105.1_2153757_2154192_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP021105.1_2154191_2155298_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP021105.1_2163339_2164695_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP021105.1_2164721_2165654_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP021105.1_2165655_2166465_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP021105.1_2166653_2167562_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP021105.1_2173804_2174869_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP021105.1_2175016_2176459_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP021105.1_2176781_2177255_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP021105.1_2177353_2178697_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP021105.1_2178873_2179557_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP021105.1_2179575_2180763_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
