assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003030905.1_ASM303090v1	NZ_CP028341	Bifidobacterium adolescentis strain 1-11 chromosome, complete genome	1	350350-350486	1	CRISPRCasFinder	no		cas3,DEDDh,WYL,csa3	Orphan	TTCGAAGACTGACGTCTTCTCACGGATCCTTCGCAGCGAAGC	42	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,csa3	NA|732aa|up_8|NZ_CP028341.1_328118_330314_+,NA|226aa|up_1|NZ_CP028341.1_346347_347025_+,NA	NA|260aa|up_9|NZ_CP028341.1_327255_328035_-	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|732aa|up_8|NZ_CP028341.1_328118_330314_+	NA	NA|317aa|up_7|NZ_CP028341.1_330310_331261_+	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|198aa|up_6|NZ_CP028341.1_331675_332269_-	pfam02632, BioY, BioY family	NA|635aa|up_5|NZ_CP028341.1_332464_334369_+	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]	NA|549aa|up_4|NZ_CP028341.1_334365_336012_+	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|3112aa|up_3|NZ_CP028341.1_336086_345422_+	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|153aa|up_2|NZ_CP028341.1_345580_346039_+	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|226aa|up_1|NZ_CP028341.1_346347_347025_+	NA	NA|90aa|up_0|NZ_CP028341.1_347179_347449_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|187aa|down_0|NZ_CP028341.1_350668_351229_+	pfam04011, LemA, LemA family	NA|741aa|down_1|NZ_CP028341.1_351367_353590_+	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|730aa|down_2|NZ_CP028341.1_353657_355847_+	pfam09972, DUF2207, Predicted membrane protein (DUF2207)	NA|288aa|down_3|NZ_CP028341.1_356084_356948_+	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR)	NA|226aa|down_4|NZ_CP028341.1_357049_357727_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|504aa|down_5|NZ_CP028341.1_358001_359513_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|530aa|down_6|NZ_CP028341.1_359615_361205_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|344aa|down_7|NZ_CP028341.1_361258_362290_+	pfam02578, Cu-oxidase_4, Multi-copper polyphenol oxidoreductase laccase	NA|276aa|down_8|NZ_CP028341.1_362420_363248_+	cd02516, CDP-ME_synthetase, CDP-ME synthetase is involved in mevalonate-independent isoprenoid production	NA|229aa|down_9|NZ_CP028341.1_363324_364011_+	cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I:  Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins
GCF_003030905.1_ASM303090v1	NZ_CP028341	Bifidobacterium adolescentis strain 1-11 chromosome, complete genome	2	454651-454764	2	CRISPRCasFinder	no		cas3,DEDDh,WYL,csa3	Orphan	CGTCCGGGTCAGGGCGGCGGCCAGCGT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,csa3	NA|260aa|up_1|NZ_CP028341.1_451775_452555_-,NA|218aa|down_4|NZ_CP028341.1_461453_462107_+,NA|30aa|down_5|NZ_CP028341.1_462281_462371_+	NA|38aa|up_9|NZ_CP028341.1_444434_444548_+	PRK00465, rpmJ, 50S ribosomal protein L36; Reviewed	NA|126aa|up_8|NZ_CP028341.1_444684_445062_+	PRK05179, rpsM, 30S ribosomal protein S13; Validated	NA|133aa|up_7|NZ_CP028341.1_445146_445545_+	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|333aa|up_6|NZ_CP028341.1_445625_446624_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|156aa|up_5|NZ_CP028341.1_446712_447180_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|307aa|up_4|NZ_CP028341.1_447286_448207_+	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E	NA|727aa|up_3|NZ_CP028341.1_448383_450564_+	pfam14403, CP_ATPgrasp_2, Circularly permuted ATP-grasp type 2	NA|267aa|up_2|NZ_CP028341.1_450668_451469_+	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|260aa|up_1|NZ_CP028341.1_451775_452555_-	NA	NA|351aa|up_0|NZ_CP028341.1_452737_453790_+	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|168aa|down_0|NZ_CP028341.1_456907_457411_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|357aa|down_1|NZ_CP028341.1_457394_458465_+	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|410aa|down_2|NZ_CP028341.1_458534_459764_+	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|473aa|down_3|NZ_CP028341.1_459894_461313_-	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|218aa|down_4|NZ_CP028341.1_461453_462107_+	NA	NA|30aa|down_5|NZ_CP028341.1_462281_462371_+	NA	NA|233aa|down_6|NZ_CP028341.1_462505_463204_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|446aa|down_7|NZ_CP028341.1_463425_464763_-	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|463aa|down_8|NZ_CP028341.1_464832_466221_-	cd16935, HATPase_AgrC-ComD-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing	NA|272aa|down_9|NZ_CP028341.1_466222_467038_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
GCF_003030905.1_ASM303090v1	NZ_CP028341	Bifidobacterium adolescentis strain 1-11 chromosome, complete genome	3	1099022-1099132	3	CRISPRCasFinder	no	WYL	cas3,DEDDh,WYL,csa3	Unclear	AAAACCCTCTCCCAAAATGAGACCGGGTTTTTC	33	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,WYL,csa3	NA|74aa|up_4|NZ_CP028341.1_1095012_1095234_+,NA|79aa|up_1|NZ_CP028341.1_1098120_1098357_+,NA|62aa|up_0|NZ_CP028341.1_1098353_1098539_+,NA|127aa|down_0|NZ_CP028341.1_1099949_1100330_+,NA|204aa|down_2|NZ_CP028341.1_1101780_1102392_+,NA|194aa|down_6|NZ_CP028341.1_1105638_1106220_-,NA|1250aa|down_7|NZ_CP028341.1_1106437_1110187_+,NA|318aa|down_8|NZ_CP028341.1_1110394_1111348_+,NA|103aa|down_9|NZ_CP028341.1_1112498_1112807_+	NA|295aa|up_9|NZ_CP028341.1_1090052_1090937_-	PRK12554, PRK12554, undecaprenyl pyrophosphate phosphatase; Reviewed	NA|264aa|up_8|NZ_CP028341.1_1091105_1091897_+	COG3001, COG3001, Uncharacterized protein conserved in bacteria [Function unknown]	NA|384aa|up_7|NZ_CP028341.1_1092005_1093157_-	TIGR02349, Chaperone_protein_DnaJ, chaperone protein DnaJ	NA|376aa|up_6|NZ_CP028341.1_1093209_1094337_-	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|139aa|up_5|NZ_CP028341.1_1094425_1094842_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|74aa|up_4|NZ_CP028341.1_1095012_1095234_+	NA	NA|530aa|up_3|NZ_CP028341.1_1095518_1097108_+	pfam01381, HTH_3, Helix-turn-helix	NA|338aa|up_2|NZ_CP028341.1_1097110_1098124_+	TIGR02971, devB-like_secretion_protein, ABC exporter membrane fusion protein, DevB family	NA|79aa|up_1|NZ_CP028341.1_1098120_1098357_+	NA	NA|62aa|up_0|NZ_CP028341.1_1098353_1098539_+	NA	NA|127aa|down_0|NZ_CP028341.1_1099949_1100330_+	NA	NA|321aa|down_1|NZ_CP028341.1_1100585_1101548_+	pfam04471, Mrr_cat, Restriction endonuclease	NA|204aa|down_2|NZ_CP028341.1_1101780_1102392_+	NA	NA|87aa|down_3|NZ_CP028341.1_1102608_1102869_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|84aa|down_4|NZ_CP028341.1_1102872_1103124_+	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|741aa|down_5|NZ_CP028341.1_1103355_1105578_+	PRK07726, PRK07726, DNA topoisomerase 3	NA|194aa|down_6|NZ_CP028341.1_1105638_1106220_-	NA	NA|1250aa|down_7|NZ_CP028341.1_1106437_1110187_+	NA	NA|318aa|down_8|NZ_CP028341.1_1110394_1111348_+	NA	NA|103aa|down_9|NZ_CP028341.1_1112498_1112807_+	NA
GCF_003030905.1_ASM303090v1	NZ_CP028341	Bifidobacterium adolescentis strain 1-11 chromosome, complete genome	4	1676050-1676157	4	CRISPRCasFinder	no		cas3,DEDDh,WYL,csa3	Orphan	CCTACAAGCTGCTCGACCAGTTCACCATGCCGATGC	36	1	1	1676086-1676121	NZ_CP028341.1_1226666-1226631	NA	1	1	Orphan	cas3,DEDDh,WYL,csa3	NA|52aa|up_8|NZ_CP028341.1_1660629_1660785_-,NA|79aa|down_1|NZ_CP028341.1_1677499_1677736_-	NA|413aa|up_9|NZ_CP028341.1_1659170_1660409_-	COG2730, BglC, Endoglucanase [Carbohydrate transport and metabolism]	NA|52aa|up_8|NZ_CP028341.1_1660629_1660785_-	NA	NA|709aa|up_7|NZ_CP028341.1_1661046_1663173_-	pfam02449, Glyco_hydro_42, Beta-galactosidase	NA|210aa|up_6|NZ_CP028341.1_1663335_1663965_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|424aa|up_5|NZ_CP028341.1_1664001_1665273_-	TIGR01436, Glutamate--cysteine_ligase_chloroplastic, glutamate--cysteine ligase, plant type	NA|1582aa|up_4|NZ_CP028341.1_1665499_1670245_-	COG3580, COG3580, Uncharacterized protein conserved in bacteria [Function unknown]	NA|238aa|up_3|NZ_CP028341.1_1670456_1671170_-	pfam13353, Fer4_12, 4Fe-4S single cluster domain	NA|802aa|up_2|NZ_CP028341.1_1671215_1673621_-	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|427aa|up_1|NZ_CP028341.1_1673933_1675214_+	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit	NA|95aa|up_0|NZ_CP028341.1_1675217_1675502_+	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|383aa|down_0|NZ_CP028341.1_1676242_1677391_-	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family	NA|79aa|down_1|NZ_CP028341.1_1677499_1677736_-	NA	NA|197aa|down_2|NZ_CP028341.1_1677735_1678326_-	cd02042, ParAB_family, partition proteins ParAB family	NA|243aa|down_3|NZ_CP028341.1_1678822_1679551_+	pfam14335, DUF4391, Domain of unknown function (DUF4391)	NA|324aa|down_4|NZ_CP028341.1_1679694_1680666_-	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|402aa|down_5|NZ_CP028341.1_1680851_1682057_-	PRK07337, PRK07337, pyridoxal phosphate-dependent aminotransferase	NA|178aa|down_6|NZ_CP028341.1_1682101_1682635_-	COG3727, Vsr, DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]	NA|335aa|down_7|NZ_CP028341.1_1682756_1683761_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|691aa|down_8|NZ_CP028341.1_1683777_1685850_+	PRK11054, helD, DNA helicase IV; Provisional	NA|159aa|down_9|NZ_CP028341.1_1685952_1686429_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)
