assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003030425.1_ASM303042v1	NZ_CP028285	Enterococcus faecalis strain FDAARGOS_324 chromosome, complete genome	1	228062-228135	1	CRISPRCasFinder	no		WYL,cas14j,cas3,DinG,DEDDh,csa3	Orphan	GTTTTTCTGTTGCTCACCAACTAT	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas14j,cas3,DinG,DEDDh,csa3	NA,NA|71aa|down_9|NZ_CP028285.1_239105_239318_+	NA|349aa|up_9|NZ_CP028285.1_214605_215652_+	PRK09354, recA, recombinase A; Provisional	NA|519aa|up_8|NZ_CP028285.1_216048_217605_+	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|266aa|up_7|NZ_CP028285.1_217764_218562_+	pfam13277, YmdB, YmdB-like protein	NA|129aa|up_6|NZ_CP028285.1_218635_219022_+	COG4550, COG4550, Predicted membrane protein [Function unknown]	NA|859aa|up_5|NZ_CP028285.1_219022_221599_+	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|711aa|up_4|NZ_CP028285.1_221630_223763_+	COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	NA|146aa|up_3|NZ_CP028285.1_224473_224911_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|324aa|up_2|NZ_CP028285.1_225085_226057_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|178aa|up_1|NZ_CP028285.1_226108_226642_-	pfam02517, Abi, CAAX protease self-immunity	NA|198aa|up_0|NZ_CP028285.1_227401_227995_-	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	NA|217aa|down_0|NZ_CP028285.1_228454_229105_-	TIGR01990, bPGM, beta-phosphoglucomutase	NA|915aa|down_1|NZ_CP028285.1_229119_231864_-	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]	NA|238aa|down_2|NZ_CP028285.1_232125_232839_+	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|218aa|down_3|NZ_CP028285.1_233235_233889_+	pfam13731, WxL, WxL domain surface cell wall-binding	NA|233aa|down_4|NZ_CP028285.1_233984_234683_+	pfam13731, WxL, WxL domain surface cell wall-binding	NA|150aa|down_5|NZ_CP028285.1_234723_235173_-	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|423aa|down_6|NZ_CP028285.1_235381_236650_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|434aa|down_7|NZ_CP028285.1_236642_237944_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|289aa|down_8|NZ_CP028285.1_238114_238981_+	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]	NA|71aa|down_9|NZ_CP028285.1_239105_239318_+	NA
GCF_003030425.1_ASM303042v1	NZ_CP028285	Enterococcus faecalis strain FDAARGOS_324 chromosome, complete genome	2	1044159-1044253	2	CRISPRCasFinder	no		WYL,cas14j,cas3,DinG,DEDDh,csa3	Orphan	CCAGATGCAAGCGGCGAACCAGA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas14j,cas3,DinG,DEDDh,csa3	NA|195aa|up_2|NZ_CP028285.1_1038281_1038866_+,NA|362aa|down_4|NZ_CP028285.1_1048895_1049981_+	NA|404aa|up_9|NZ_CP028285.1_1028418_1029630_+	COG4552, Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]	NA|111aa|up_8|NZ_CP028285.1_1030056_1030389_+	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|882aa|up_7|NZ_CP028285.1_1030502_1033148_-	TIGR01828, Pyruvate_phosphate_dikinase, pyruvate, phosphate dikinase	NA|210aa|up_6|NZ_CP028285.1_1033317_1033947_+	cd04617, CBS_pair_CcpN, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains of CcpN repressor	NA|271aa|up_5|NZ_CP028285.1_1033959_1034772_+	pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase	NA|844aa|up_4|NZ_CP028285.1_1034842_1037374_-	COG2898, COG2898, Uncharacterized conserved protein [Function unknown]	NA|245aa|up_3|NZ_CP028285.1_1037370_1038105_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|195aa|up_2|NZ_CP028285.1_1038281_1038866_+	NA	NA|352aa|up_1|NZ_CP028285.1_1038888_1039944_+	cd09080, TDP2, Phosphodiesterase domain of human TDP2, a 5'-tyrosyl DNA phosphodiesterase, and related domains	NA|746aa|up_0|NZ_CP028285.1_1039992_1042230_-	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]	NA|315aa|down_0|NZ_CP028285.1_1044822_1045767_+	pfam01636, APH, Phosphotransferase enzyme family	NA|218aa|down_1|NZ_CP028285.1_1045809_1046463_+	pfam15983, DUF4767, Domain of unknown function (DUF4767)	NA|137aa|down_2|NZ_CP028285.1_1046572_1046983_+	cd04413, NDPk_I, Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate	NA|537aa|down_3|NZ_CP028285.1_1047142_1048753_+	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase	NA|362aa|down_4|NZ_CP028285.1_1048895_1049981_+	NA	NA|268aa|down_5|NZ_CP028285.1_1050096_1050900_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|192aa|down_6|NZ_CP028285.1_1051105_1051681_+	pfam07099, DUF1361, Protein of unknown function (DUF1361)	NA|469aa|down_7|NZ_CP028285.1_1051832_1053239_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|399aa|down_8|NZ_CP028285.1_1053447_1054644_+	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|62aa|down_9|NZ_CP028285.1_1054698_1054884_-	pfam11151, DUF2929, Protein of unknown function (DUF2929)
GCF_003030425.1_ASM303042v1	NZ_CP028285	Enterococcus faecalis strain FDAARGOS_324 chromosome, complete genome	3	1937633-1937868	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no		WYL,cas14j,cas3,DinG,DEDDh,csa3	Orphan	GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC,GTTTTGGTACCATTCTAAACAACATGACTCTAAAAC,GTTTTGGTACCATTCTAAACAACATGACTCTAAAACCT	36,36,38	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	3,3,2	3	Orphan	WYL,cas14j,cas3,DinG,DEDDh,csa3	NA,NA	NA|250aa|up_9|NZ_CP028285.1_1923533_1924283_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|234aa|up_8|NZ_CP028285.1_1924400_1925102_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|808aa|up_7|NZ_CP028285.1_1925232_1927656_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|404aa|up_6|NZ_CP028285.1_1927969_1929181_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|302aa|up_5|NZ_CP028285.1_1929209_1930115_-	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|327aa|up_4|NZ_CP028285.1_1930236_1931217_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|589aa|up_3|NZ_CP028285.1_1931296_1933063_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|578aa|up_2|NZ_CP028285.1_1933059_1934793_-	TIGR02857, transport_ATP-binding_protein, thiol reductant ABC exporter, CydD subunit	NA|338aa|up_1|NZ_CP028285.1_1934797_1935811_-	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II	NA|473aa|up_0|NZ_CP028285.1_1935807_1937226_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|288aa|down_0|NZ_CP028285.1_1938023_1938887_-	smart00871, AraC_E_bind, Bacterial transcription activator, effector binding domain	NA|750aa|down_1|NZ_CP028285.1_1938971_1941221_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|122aa|down_2|NZ_CP028285.1_1941183_1941549_-	pfam06279, DUF1033, Protein of unknown function (DUF1033)	NA|190aa|down_3|NZ_CP028285.1_1941646_1942216_-	pfam13305, WHG, WHG domain	NA|172aa|down_4|NZ_CP028285.1_1942348_1942864_+	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|413aa|down_5|NZ_CP028285.1_1942880_1944119_+	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|375aa|down_6|NZ_CP028285.1_1944297_1945422_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|115aa|down_7|NZ_CP028285.1_1945647_1945992_-	pfam08866, DUF1831, Putative amino acid metabolism	NA|382aa|down_8|NZ_CP028285.1_1946059_1947205_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|325aa|down_9|NZ_CP028285.1_1947361_1948336_-	PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional
GCF_003030425.1_ASM303042v1	NZ_CP028284	Enterococcus faecalis strain FDAARGOS_324 plasmid unnamed2, complete sequence	1	4920-5051	1	CRISPRCasFinder	no			Orphan	GTTGGTTTTTCCCACTTTCGAACA	24	0	0	NA	NA	NA	2	2	Orphan	WYL,cas14j,cas3,DinG,DEDDh,csa3	NA,NA|119aa|down_0|NZ_CP028284.1_5734_6091_-,NA|99aa|down_2|NZ_CP028284.1_7119_7416_-,NA|37aa|down_3|NZ_CP028284.1_7655_7766_-,NA|117aa|down_4|NZ_CP028284.1_8016_8367_-,NA|101aa|down_6|NZ_CP028284.1_10118_10421_-,NA|70aa|down_7|NZ_CP028284.1_10432_10642_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|318aa|up_2|NZ_CP028284.1_520_1474_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|385aa|up_1|NZ_CP028284.1_1506_2661_-	COG1916, COG1916, Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown]	NA|546aa|up_0|NZ_CP028284.1_2671_4309_-	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|119aa|down_0|NZ_CP028284.1_5734_6091_-	NA	NA|261aa|down_1|NZ_CP028284.1_6083_6866_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|99aa|down_2|NZ_CP028284.1_7119_7416_-	NA	NA|37aa|down_3|NZ_CP028284.1_7655_7766_-	NA	NA|117aa|down_4|NZ_CP028284.1_8016_8367_-	NA	NA|443aa|down_5|NZ_CP028284.1_8363_9692_-	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	NA|101aa|down_6|NZ_CP028284.1_10118_10421_-	NA	NA|70aa|down_7|NZ_CP028284.1_10432_10642_-	NA	NA|202aa|down_8|NZ_CP028284.1_10889_11495_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|991aa|down_9|NZ_CP028284.1_11625_14598_+	pfam01526, DDE_Tnp_Tn3, Tn3 transposase DDE domain
