assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003030405.1_ASM303040v1	NZ_CP028333	Listeria monocytogenes strain CFSAN054108 chromosome, complete genome	1	138780-138934	1	CRISPRCasFinder	no	cas3	cas3,DinG,csa3,WYL,DEDDh,casR	Unclear	GTCTCTGGCAAAGCAAGTCTTAACTCTTCATCCGTAGGTGGTGGTGGAAA	50	0	0	NA	NA	NA	1	1	Unclear	cas3,DinG,csa3,WYL,DEDDh,casR	NA,NA	cas3|1180aa|up_9|NZ_CP028333.1_127856_131396_-	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|187aa|up_8|NZ_CP028333.1_131509_132070_-	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|195aa|up_7|NZ_CP028333.1_132176_132761_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|208aa|up_6|NZ_CP028333.1_132850_133474_-	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|314aa|up_5|NZ_CP028333.1_133767_134709_+	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|244aa|up_4|NZ_CP028333.1_134729_135461_+	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|111aa|up_3|NZ_CP028333.1_135527_135860_+	PRK01119, PRK01119, putative heavy metal-binding protein	NA|154aa|up_2|NZ_CP028333.1_135912_136374_-	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|108aa|up_1|NZ_CP028333.1_136506_136830_-	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|290aa|up_0|NZ_CP028333.1_136901_137771_-	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|511aa|down_0|NZ_CP028333.1_139925_141458_-	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|530aa|down_1|NZ_CP028333.1_141792_143382_-	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|318aa|down_2|NZ_CP028333.1_143624_144578_+	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|238aa|down_3|NZ_CP028333.1_144850_145564_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|319aa|down_4|NZ_CP028333.1_145607_146564_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|458aa|down_5|NZ_CP028333.1_146614_147988_-	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|103aa|down_6|NZ_CP028333.1_148374_148683_-	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|down_7|NZ_CP028333.1_148801_149110_-	PRK13259, PRK13259, septation regulator SpoVG	NA|403aa|down_8|NZ_CP028333.1_149793_151002_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|231aa|down_9|NZ_CP028333.1_150998_151691_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein
GCF_003030405.1_ASM303040v1	NZ_CP028333	Listeria monocytogenes strain CFSAN054108 chromosome, complete genome	2	2818466-2819050	1	CRT	no		cas3,DinG,csa3,WYL,DEDDh,casR	Orphan	CATATNAGTTACTGAACTNGTATCAAAATTACTTACATC	39	0	0	NA	NA	NA	7	7	Orphan	cas3,DinG,csa3,WYL,DEDDh,casR	NA|81aa|up_5|NZ_CP028333.1_2813263_2813506_-,NA|206aa|up_4|NZ_CP028333.1_2814565_2815183_-,NA|89aa|up_3|NZ_CP028333.1_2815918_2816185_-,NA|162aa|up_1|NZ_CP028333.1_2816593_2817079_-,NA|158aa|up_0|NZ_CP028333.1_2817098_2817572_-,NA	NA|187aa|up_9|NZ_CP028333.1_2809341_2809902_-	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|120aa|up_8|NZ_CP028333.1_2810227_2810587_-	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|276aa|up_7|NZ_CP028333.1_2810614_2811442_-	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|326aa|up_6|NZ_CP028333.1_2812203_2813181_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|81aa|up_5|NZ_CP028333.1_2813263_2813506_-	NA	NA|206aa|up_4|NZ_CP028333.1_2814565_2815183_-	NA	NA|89aa|up_3|NZ_CP028333.1_2815918_2816185_-	NA	NA|102aa|up_2|NZ_CP028333.1_2816260_2816566_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|162aa|up_1|NZ_CP028333.1_2816593_2817079_-	NA	NA|158aa|up_0|NZ_CP028333.1_2817098_2817572_-	NA	NA|616aa|down_0|NZ_CP028333.1_2819842_2821690_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|513aa|down_1|NZ_CP028333.1_2821953_2823492_-	pfam05043, Mga, Mga helix-turn-helix domain	NA|517aa|down_2|NZ_CP028333.1_2824125_2825676_-	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|367aa|down_3|NZ_CP028333.1_2825668_2826769_-	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|428aa|down_4|NZ_CP028333.1_2826769_2828053_-	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|532aa|down_5|NZ_CP028333.1_2828187_2829783_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|316aa|down_6|NZ_CP028333.1_2829938_2830886_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|383aa|down_7|NZ_CP028333.1_2830890_2832039_+	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|720aa|down_8|NZ_CP028333.1_2832035_2834195_+	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|252aa|down_9|NZ_CP028333.1_2834311_2835067_+	pfam16160, DUF4866, Domain of unknown function (DUF4866)
GCF_003030405.1_ASM303040v1	NZ_CP028333	Listeria monocytogenes strain CFSAN054108 chromosome, complete genome	3	2820696-2820874	2	CRISPRCasFinder	no		cas3,DinG,csa3,WYL,DEDDh,casR	Orphan	GAACTCGTATCAAAACTGCTTAA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,csa3,WYL,DEDDh,casR	NA|81aa|up_6|NZ_CP028333.1_2813263_2813506_-,NA|206aa|up_5|NZ_CP028333.1_2814565_2815183_-,NA|89aa|up_4|NZ_CP028333.1_2815918_2816185_-,NA|162aa|up_2|NZ_CP028333.1_2816593_2817079_-,NA|158aa|up_1|NZ_CP028333.1_2817098_2817572_-,NA	NA|120aa|up_9|NZ_CP028333.1_2810227_2810587_-	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|276aa|up_8|NZ_CP028333.1_2810614_2811442_-	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|326aa|up_7|NZ_CP028333.1_2812203_2813181_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|81aa|up_6|NZ_CP028333.1_2813263_2813506_-	NA	NA|206aa|up_5|NZ_CP028333.1_2814565_2815183_-	NA	NA|89aa|up_4|NZ_CP028333.1_2815918_2816185_-	NA	NA|102aa|up_3|NZ_CP028333.1_2816260_2816566_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|162aa|up_2|NZ_CP028333.1_2816593_2817079_-	NA	NA|158aa|up_1|NZ_CP028333.1_2817098_2817572_-	NA	NA|690aa|up_0|NZ_CP028333.1_2817637_2819707_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|513aa|down_0|NZ_CP028333.1_2821953_2823492_-	pfam05043, Mga, Mga helix-turn-helix domain	NA|517aa|down_1|NZ_CP028333.1_2824125_2825676_-	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|367aa|down_2|NZ_CP028333.1_2825668_2826769_-	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|428aa|down_3|NZ_CP028333.1_2826769_2828053_-	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|532aa|down_4|NZ_CP028333.1_2828187_2829783_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|316aa|down_5|NZ_CP028333.1_2829938_2830886_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|383aa|down_6|NZ_CP028333.1_2830890_2832039_+	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|720aa|down_7|NZ_CP028333.1_2832035_2834195_+	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|252aa|down_8|NZ_CP028333.1_2834311_2835067_+	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|222aa|down_9|NZ_CP028333.1_2835087_2835753_+	COG3619, COG3619, Predicted membrane protein [Function unknown]
