assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003030245.1_ASM303024v1	NZ_CP028192	Escherichia coli strain CFSAN018748 chromosome, complete genome	1	1556189-1556402	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCGCC,GAGTTCCCCGCGCCAGCGGGGATAAACC,GAGTTCCCCGCGCCAGCGGGGATAAACCGCC	31,28,31	0	0	NA	NA	I-E:I-E:I-E	2,3,3	3	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	NA,NA	NA|451aa|up_9|NZ_CP028192.1_1539232_1540585_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|447aa|up_8|NZ_CP028192.1_1540586_1541927_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|up_7|NZ_CP028192.1_1541947_1543288_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|919aa|up_6|NZ_CP028192.1_1543418_1546175_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_5|NZ_CP028192.1_1546231_1547533_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_4|NZ_CP028192.1_1547580_1549815_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_3|NZ_CP028192.1_1549910_1550702_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP028192.1_1550929_1552567_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP028192.1_1552654_1553953_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP028192.1_1555178_1555850_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP028192.1_1557038_1558517_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP028192.1_1558543_1559821_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP028192.1_1560138_1560924_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP028192.1_1560993_1562448_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|153aa|down_4|NZ_CP028192.1_1562661_1563120_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|446aa|down_5|NZ_CP028192.1_1563251_1564589_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_6|NZ_CP028192.1_1564566_1565346_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_7|NZ_CP028192.1_1565342_1566203_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_8|NZ_CP028192.1_1566349_1566925_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|NZ_CP028192.1_1566941_1567202_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_003030245.1_ASM303024v1	NZ_CP028192	Escherichia coli strain CFSAN018748 chromosome, complete genome	2	1582532-1582926	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	6,6,5	6	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	NA,NA	NA|571aa|up_9|NZ_CP028192.1_1571021_1572734_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP028192.1_1572807_1573542_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_7|NZ_CP028192.1_1573807_1573960_+	pfam01848, HOK_GEF, Hok/gef family	cas8e|521aa|up_6|NZ_CP028192.1_1576670_1578233_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP028192.1_1578229_1578766_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP028192.1_1578780_1579836_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP028192.1_1579846_1580593_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP028192.1_1580574_1581225_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP028192.1_1581221_1582145_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP028192.1_1582141_1582435_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP028192.1_1583007_1584045_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP028192.1_1584296_1585205_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP028192.1_1585206_1586634_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP028192.1_1586633_1587239_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP028192.1_1587288_1587612_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP028192.1_1587805_1588117_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP028192.1_1588135_1588846_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP028192.1_1588845_1589325_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP028192.1_1589321_1590371_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP028192.1_1590351_1591113_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_003030245.1_ASM303024v1	NZ_CP028192	Escherichia coli strain CFSAN018748 chromosome, complete genome	3	2836087-2836210	3	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	NA,NA|30aa|down_7|NZ_CP028192.1_2845107_2845197_+	NA|471aa|up_9|NZ_CP028192.1_2825540_2826953_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP028192.1_2827509_2827719_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP028192.1_2828174_2828801_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP028192.1_2828821_2830924_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP028192.1_2830927_2831575_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP028192.1_2831638_2832307_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP028192.1_2832303_2833089_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP028192.1_2833092_2833905_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|537aa|up_1|NZ_CP028192.1_2833910_2835521_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP028192.1_2835646_2835952_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP028192.1_2836525_2837782_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP028192.1_2837822_2839196_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP028192.1_2839410_2840052_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP028192.1_2840091_2841240_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP028192.1_2841530_2842742_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP028192.1_2842854_2843787_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP028192.1_2843783_2844809_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP028192.1_2845107_2845197_+	NA	NA|390aa|down_8|NZ_CP028192.1_2845362_2846532_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP028192.1_2846677_2847259_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_003030245.1_ASM303024v1	NZ_CP028192	Escherichia coli strain CFSAN018748 chromosome, complete genome	4	3523409-3523500	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	NA|70aa|up_9|NZ_CP028192.1_3512660_3512870_-,NA	NA|70aa|up_9|NZ_CP028192.1_3512660_3512870_-	NA	NA|1321aa|up_8|NZ_CP028192.1_3512924_3516887_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP028192.1_3516926_3517565_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP028192.1_3517852_3518944_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP028192.1_3518943_3519636_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP028192.1_3519647_3520034_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|271aa|up_3|NZ_CP028192.1_3520041_3520854_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP028192.1_3520850_3521441_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP028192.1_3521451_3521946_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP028192.1_3521966_3523295_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP028192.1_3523924_3524521_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP028192.1_3524541_3524769_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP028192.1_3524806_3526048_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP028192.1_3526340_3527600_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP028192.1_3527859_3528780_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP028192.1_3528779_3529085_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP028192.1_3529177_3529777_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP028192.1_3529773_3532320_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP028192.1_3532319_3533492_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP028192.1_3533621_3534314_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_003030245.1_ASM303024v1	NZ_CP028192	Escherichia coli strain CFSAN018748 chromosome, complete genome	5	4640129-4640262	3	PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	Orphan	ATCACCAATATTGAAAAT	18	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,cas14j,DinG,RT	NA,NA	NA|283aa|up_9|NZ_CP028192.1_4630668_4631517_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|78aa|up_8|NZ_CP028192.1_4631817_4632051_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP028192.1_4632136_4632616_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP028192.1_4632807_4634670_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP028192.1_4634662_4635193_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP028192.1_4635300_4636632_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP028192.1_4636690_4636978_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP028192.1_4636974_4638261_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP028192.1_4638311_4639253_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP028192.1_4639267_4640038_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP028192.1_4640510_4642025_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP028192.1_4642055_4643198_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP028192.1_4643315_4644533_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP028192.1_4644606_4646160_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP028192.1_4646268_4647054_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP028192.1_4647059_4647650_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP028192.1_4647768_4648164_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1073aa|down_7|NZ_CP028192.1_4648424_4651643_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP028192.1_4651660_4652809_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP028192.1_4653264_4654086_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
