The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP028183	Listeria monocytogenes strain CFSAN054109 chromosome, complete genome	3062735	130149	136674	3062735	tail	Listeria_phage(33.33%)	10	NA	NA
WP_003721739.1|130149_130602_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
WP_003721740.1|130607_130943_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003732219.1|131159_131588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031669175.1|131599_132016_+	hypothetical protein	NA	A8ASQ1	Listeria_phage	38.6	3.8e-20
WP_003733902.1|132293_132683_+	DUF5072 domain-containing protein	NA	NA	NA	NA	NA
WP_003721744.1|132695_133208_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
WP_003721745.1|133255_133558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072217178.1|133599_134004_+	phenylalanine racemase	NA	NA	NA	NA	NA
WP_031669176.1|133990_135859_+	membrane protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
WP_031669177.1|135855_136674_+|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	9.4e-39
>prophage 2
NZ_CP028183	Listeria monocytogenes strain CFSAN054109 chromosome, complete genome	3062735	684038	741009	3062735	capsid,portal,head,protease,tail,terminase,transposase,holin,integrase	Listeria_phage(55.88%)	67	692685:692704	730008:730027
WP_014930665.1|684038_685190_-|integrase	site-specific integrase	integrase	A8ATX2	Listeria_phage	46.3	4.5e-87
WP_039187930.1|685211_685925_-	lipoprotein	NA	NA	NA	NA	NA
WP_031641923.1|685979_686480_-	hypothetical protein	NA	A0A1S7FYX8	Listeria_phage	31.1	7.1e-13
WP_039187933.1|686480_686831_-	helix-turn-helix domain-containing protein	NA	A0A059T669	Listeria_phage	47.6	7.9e-19
WP_031641921.1|686984_687182_+	helix-turn-helix transcriptional regulator	NA	A0A059T7X5	Listeria_phage	52.3	7.5e-11
WP_039187936.1|687204_687531_+	DUF771 domain-containing protein	NA	A0A2H4J474	uncultured_Caudovirales_phage	40.6	3.2e-14
WP_039188040.1|688743_689100_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_039188042.1|689096_689513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039188044.1|689699_690224_+	hypothetical protein	NA	A0A059T5F9	Listeria_phage	95.4	5.9e-95
WP_039188046.1|690232_690697_+	class I SAM-dependent methyltransferase	NA	A0A059T693	Listeria_phage	97.4	1.4e-87
WP_039194685.1|690693_691254_+	DUF1642 domain-containing protein	NA	A8ATY9	Listeria_phage	95.7	3.8e-100
WP_014601510.1|691312_691714_+	hypothetical protein	NA	A8ATD9	Listeria_phage	100.0	2.6e-74
WP_039194683.1|691710_691920_+	hypothetical protein	NA	A8ATE0	Listeria_phage	94.2	1.6e-30
WP_039194681.1|692023_692203_+	hypothetical protein	NA	A0A076G7F4	Listeria_phage	85.5	1.4e-19
WP_039194679.1|692199_692679_+	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	83.8	2.5e-68
692685:692704	attL	AAAGGAGCGATGAAAATGGA	NA	NA	NA	NA
WP_039187812.1|692699_692939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039187808.1|692929_693115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023552279.1|693185_693704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023552281.1|693700_694243_+|integrase	tyrosine-type recombinase/integrase	integrase	H0USV4	Bacillus_phage	53.3	2.5e-48
WP_014930678.1|694258_694597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039187805.1|694861_695188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052198696.1|695184_695547_+	HNH endonuclease	NA	A0A075M5R4	Enterococcus_phage	45.2	1.2e-14
WP_031668911.1|695641_696169_+|terminase	phage terminase small subunit P27 family	terminase	J7KC46	Streptococcus_phage	46.1	2.3e-30
WP_050018406.1|696137_697889_+|terminase	terminase large subunit	terminase	A0A2H4JCI4	uncultured_Caudovirales_phage	50.5	5.3e-156
WP_023552290.1|697895_698096_+	DUF1056 family protein	NA	NA	NA	NA	NA
WP_012951323.1|698098_699334_+|portal	phage portal protein	portal	A0A2H4JAR2	uncultured_Caudovirales_phage	42.1	3.6e-82
WP_012951324.1|699330_699897_+|head,protease	HK97 family phage prohead protease	head,protease	A0A1D6Z2A7	Staphylococcus_phage	52.2	1.0e-44
WP_012951325.1|699960_701130_+|capsid	phage major capsid protein	capsid	A0A060AI54	Enterococcus_phage	38.1	2.1e-44
WP_012951326.1|701178_701517_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JB77	uncultured_Caudovirales_phage	37.8	8.1e-13
WP_012951327.1|701486_701807_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_031668913.1|701800_702166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012951329.1|702168_702567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012951330.1|702587_703163_+|tail	major tail protein	tail	M1PRQ7	Streptococcus_phage	42.4	1.2e-32
WP_012951331.1|703252_703600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031668914.1|703796_707996_+|tail	phage tail tape measure protein	tail	J7KDT4	Streptococcus_phage	43.7	1.2e-124
WP_014930683.1|707988_710232_+|tail	phage tail component protein	tail	A0A059T682	Listeria_phage	29.4	1.2e-56
WP_031668916.1|710237_712529_+	phage minor structural protein	NA	A0A059T7Y6	Listeria_phage	37.9	5.7e-134
WP_039194677.1|712521_713583_+	hypothetical protein	NA	A0A059T7R4	Listeria_phage	50.7	2.7e-94
WP_003722523.1|713621_713987_+	hypothetical protein	NA	Q9T1A0	Listeria_phage	100.0	7.4e-12
WP_003722522.1|713999_714281_+|holin	holin	holin	A8ASL4	Listeria_phage	94.6	3.4e-41
WP_039194676.1|714280_715126_+	peptidase M15	NA	A0A059T7Y8	Listeria_phage	95.1	1.8e-138
WP_031668927.1|715199_715649_-	anti-CRISPR protein AcrIIA1	NA	Q9T196	Listeria_phage	95.3	9.3e-73
WP_031668925.1|715653_716025_-	anti-CRISPR protein AcrIIA2	NA	A0A059T5F6	Listeria_phage	92.6	1.6e-57
WP_031669190.1|718200_719064_+|protease	trypsin-like serine protease	protease	NA	NA	NA	NA
WP_003732618.1|719063_719423_+	lipoprotein	NA	NA	NA	NA	NA
WP_031669191.1|719954_720488_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_003722839.1|720551_721469_+	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA	NA
WP_031669192.1|721734_723615_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	38.2	1.1e-106
WP_009924467.1|723710_724439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003732614.1|724579_725230_+	transaldolase	NA	A0A0E3HJ81	Synechococcus_phage	27.6	3.4e-15
WP_107176680.1|725269_727090_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	28.4	2.2e-48
WP_003732612.1|727324_728716_+	amino acid permease	NA	NA	NA	NA	NA
WP_003732611.1|728805_729645_+	VOC family protein	NA	NA	NA	NA	NA
WP_003721764.1|729727_730012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003721765.1|730109_731060_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
730008:730027	attR	TCCATTTTCATCGCTCCTTT	NA	NA	NA	NA
WP_003721766.1|731083_731725_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010989537.1|731767_734458_+	YhgE/Pip domain-containing protein	NA	NA	NA	NA	NA
WP_003721768.1|734503_735151_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003721769.1|735159_735696_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003733993.1|735682_736603_-	DUF975 family protein	NA	NA	NA	NA	NA
WP_003721771.1|736793_737003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010989538.1|737070_737778_+	serine/threonine protein phosphatase	NA	A0A249Y183	Enterococcus_phage	27.8	2.5e-19
WP_003721773.1|737821_738385_-	DUF420 domain-containing protein	NA	NA	NA	NA	NA
WP_003721774.1|738504_738921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003721775.1|738972_739608_+	endonuclease III domain-containing protein	NA	NA	NA	NA	NA
WP_003721776.1|739597_740494_-	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009931745.1|740724_741009_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP028183	Listeria monocytogenes strain CFSAN054109 chromosome, complete genome	3062735	1164822	1172245	3062735		Hokovirus(33.33%)	8	NA	NA
WP_003721506.1|1164822_1165206_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	1.4e-16
WP_015454559.1|1165227_1166211_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	34.6	4.1e-12
WP_014930875.1|1166225_1167239_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	32.0	6.0e-11
WP_003721509.1|1167447_1168938_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.7	9.5e-114
WP_015454563.1|1168949_1169774_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.9	3.3e-68
WP_031669482.1|1169786_1170095_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_031669483.1|1170155_1170560_+	PTS lactose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_020246560.1|1170688_1172245_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.1	2.3e-17
>prophage 4
NZ_CP028183	Listeria monocytogenes strain CFSAN054109 chromosome, complete genome	3062735	1261387	1364340	3062735	capsid,portal,tRNA,protease,tail,terminase,holin,integrase	Listeria_phage(71.19%)	108	1287072:1287093	1326654:1326675
WP_003721619.1|1261387_1262440_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	34.9	1.3e-29
WP_031669510.1|1262439_1264848_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_014600776.1|1265008_1265710_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.4	3.0e-33
WP_015454628.1|1265723_1269134_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_003721623.1|1269231_1269684_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_031669512.1|1269699_1272900_+	MMPL family transporter	NA	NA	NA	NA	NA
WP_015454632.1|1273006_1273681_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	47.3	3.7e-49
WP_072217174.1|1273717_1274644_-	ribonuclease HIII	NA	NA	NA	NA	NA
WP_003740576.1|1274797_1275061_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003723849.1|1275060_1275603_+	CvpA family protein	NA	NA	NA	NA	NA
WP_015454633.1|1275695_1277408_+	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.8	1.1e-17
WP_015454634.1|1277430_1279788_+	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	50.4	1.0e-21
WP_003723853.1|1279868_1280180_+	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	39.6	5.4e-19
WP_003732777.1|1280255_1282067_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003732778.1|1282255_1283470_+	aspartate kinase	NA	NA	NA	NA	NA
WP_003733801.1|1283525_1284020_-	YslB family protein	NA	NA	NA	NA	NA
WP_003723856.1|1284167_1284968_+	glutamate racemase	NA	NA	NA	NA	NA
WP_031669515.1|1284980_1285727_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_012951514.1|1285730_1286342_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_015454643.1|1286378_1286903_+	metallophosphoesterase	NA	NA	NA	NA	NA
1287072:1287093	attL	AATCCCTCTCAGGACGTAATAT	NA	NA	NA	NA
WP_031660124.1|1287188_1288343_-|integrase	site-specific integrase	integrase	A0A059T688	Listeria_phage	94.8	1.1e-207
WP_003730990.1|1288474_1289089_-	hypothetical protein	NA	A0A059T7Z1	Listeria_phage	77.0	7.7e-78
WP_003730991.1|1289139_1289592_-	ImmA/IrrE family metallo-endopeptidase	NA	R4IBK9	Listeria_phage	90.0	4.8e-77
WP_003730992.1|1289608_1289932_-	helix-turn-helix transcriptional regulator	NA	A0A059T6G1	Listeria_phage	71.0	7.2e-35
WP_003730994.1|1290330_1290534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003730995.1|1290600_1290792_+	helix-turn-helix transcriptional regulator	NA	A0A059T5F8	Listeria_phage	87.1	5.4e-22
WP_003730996.1|1290813_1291056_+	hypothetical protein	NA	A8ATD2	Listeria_phage	93.8	3.9e-41
WP_003730997.1|1291058_1291244_+	hypothetical protein	NA	A8ATD3	Listeria_phage	98.4	3.7e-28
WP_012951522.1|1291981_1292224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003731843.1|1292509_1292725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077913973.1|1292721_1293366_+	DUF1642 domain-containing protein	NA	Q8W5X2	Listeria_phage	42.6	9.4e-34
WP_009912778.1|1293424_1293940_+	hypothetical protein	NA	C9E2P0	Enterococcus_phage	45.5	1.8e-32
WP_102565918.1|1294097_1294589_+	DUF1642 domain-containing protein	NA	R4IBV9	Listeria_phage	69.2	2.6e-28
WP_031669126.1|1294589_1295012_+	hypothetical protein	NA	Q8W5W4	Listeria_phage	95.0	1.5e-69
WP_009911360.1|1295178_1295556_+	hypothetical protein	NA	Q8W5W2	Listeria_phage	66.9	5.1e-40
WP_003731665.1|1295559_1296039_+	siphovirus Gp157 family protein	NA	R4IBM0	Listeria_phage	76.7	7.6e-57
WP_003731664.1|1296058_1296748_+	AAA family ATPase	NA	R4IDY8	Listeria_phage	96.9	1.1e-128
WP_031669966.1|1296811_1298068_+	DEAD/DEAH box helicase	NA	Q8W5V9	Listeria_phage	96.2	2.7e-234
WP_009928019.1|1298092_1298578_+	DUF669 domain-containing protein	NA	A0A059T5G4	Listeria_phage	100.0	2.9e-88
WP_031669965.1|1298600_1300874_+	DNA primase	NA	A0A059T6A4	Listeria_phage	99.9	0.0e+00
WP_031669964.1|1301160_1301475_+	VRR-NUC domain-containing protein	NA	Q8W5V6	Listeria_phage	98.1	1.7e-52
WP_061107422.1|1301587_1302121_+	DUF3310 domain-containing protein	NA	A8ATF5	Listeria_phage	78.3	8.2e-76
WP_003731655.1|1302338_1302566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009917712.1|1302578_1303004_+	DUF722 domain-containing protein	NA	A0A059T6H4	Listeria_phage	100.0	8.0e-74
WP_031669127.1|1303101_1303845_+	DUF559 domain-containing protein	NA	NA	NA	NA	NA
WP_026749920.1|1304304_1304631_+	hypothetical protein	NA	A0A059T5G5	Listeria_phage	98.1	8.3e-55
WP_009928009.1|1304630_1304945_+	HNH endonuclease	NA	A8ATF8	Listeria_phage	99.0	3.8e-57
WP_061107421.1|1304993_1305350_+	hypothetical protein	NA	A8AT94	Listeria_phage	99.0	2.0e-46
WP_061107420.1|1305346_1306990_+|terminase	terminase large subunit	terminase	A8AT95	Listeria_phage	98.7	0.0e+00
WP_061107419.1|1307001_1308132_+|portal	phage portal protein	portal	A0A059T6F0	Listeria_phage	98.4	4.0e-213
WP_045552976.1|1308128_1308926_+|protease	Clp protease ClpP	protease	A0A059T5F2	Listeria_phage	95.5	4.3e-137
WP_061107418.1|1308952_1310104_+|capsid	phage major capsid protein	capsid	A8AT98	Listeria_phage	93.0	2.7e-201
WP_003731645.1|1310290_1310590_+	hypothetical protein	NA	A8ATA0	Listeria_phage	100.0	5.3e-48
WP_045552979.1|1310573_1310939_+	hypothetical protein	NA	A8ATA1	Listeria_phage	94.2	2.3e-61
WP_045552980.1|1310935_1311337_+	hypothetical protein	NA	A8ATA2	Listeria_phage	97.0	2.0e-66
WP_061107417.1|1311333_1311717_+	hypothetical protein	NA	A8ATA3	Listeria_phage	95.3	4.4e-63
WP_012581455.1|1311738_1312326_+|tail	phage tail protein	tail	A8ATA4	Listeria_phage	100.0	4.0e-108
WP_009917698.1|1312397_1312730_+	hypothetical protein	NA	A8ATA5	Listeria_phage	99.1	1.8e-52
WP_069001010.1|1312945_1317871_+|tail	phage tail tape measure protein	tail	A0A059T5F4	Listeria_phage	94.5	0.0e+00
WP_023553822.1|1317863_1319513_+|tail	phage tail protein	tail	A0A059T682	Listeria_phage	99.6	0.0e+00
WP_031669134.1|1319525_1321820_+	hypothetical protein	NA	A0A059T7Y6	Listeria_phage	98.3	0.0e+00
WP_069001009.1|1321809_1322901_+	carbohydrate-binding protein CenC	NA	A0A059T7R4	Listeria_phage	98.9	5.8e-201
WP_003722523.1|1322939_1323305_+	hypothetical protein	NA	Q9T1A0	Listeria_phage	100.0	7.4e-12
WP_023559373.1|1323317_1323599_+|holin	holin	holin	A8ASL4	Listeria_phage	93.5	1.0e-40
WP_003733663.1|1323598_1324444_+	peptidase M15	NA	A0A059T7Y8	Listeria_phage	94.7	2.7e-137
WP_003722520.1|1324484_1325258_-	DUF3825 domain-containing protein	NA	A8ATW5	Listeria_phage	100.0	9.5e-150
WP_012951561.1|1325531_1325714_-	hypothetical protein	NA	A0A059T7Z0	Listeria_phage	96.6	2.3e-22
WP_012951563.1|1326154_1326388_+	hypothetical protein	NA	A8ATC5	Listeria_phage	98.7	1.6e-36
WP_015454644.1|1327034_1328393_+	DUF1254 domain-containing protein	NA	NA	NA	NA	NA
1326654:1326675	attR	AATCCCTCTCAGGACGTAATAT	NA	NA	NA	NA
WP_003723540.1|1328434_1329028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012581425.1|1329164_1329572_-	VOC family protein	NA	NA	NA	NA	NA
WP_003723542.1|1329736_1330336_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.5	2.9e-29
WP_003723543.1|1330368_1330629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723544.1|1330752_1332165_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.1	1.1e-50
WP_003723545.1|1332189_1332453_+	DUF3116 family protein	NA	NA	NA	NA	NA
WP_031668941.1|1332620_1333097_+	8-oxo-dGTP diphosphatase	NA	NA	NA	NA	NA
WP_003723547.1|1333134_1333380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003732784.1|1333376_1334582_-	MFS transporter	NA	NA	NA	NA	NA
WP_003732785.1|1334786_1335446_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_003723550.1|1335487_1335682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723551.1|1335748_1336597_-	YitT family protein	NA	NA	NA	NA	NA
WP_003723554.1|1337216_1337930_+	trehalose operon repressor	NA	NA	NA	NA	NA
WP_003723555.1|1337949_1339608_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
WP_003723556.1|1339626_1341111_-	PTS system trehalose-specific EIIBC component	NA	NA	NA	NA	NA
WP_003723557.1|1341226_1341679_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_003723558.1|1341725_1342190_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723559.1|1342378_1343299_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003723560.1|1343318_1344566_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	51.8	1.2e-106
WP_003723561.1|1344549_1345380_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.4	4.3e-47
WP_003723562.1|1345515_1346655_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003723563.1|1346735_1347131_-	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_003727524.1|1347281_1347497_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003732794.1|1347614_1348148_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_003732795.1|1348165_1348831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003732796.1|1349092_1350031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003723884.1|1350145_1351429_+	trigger factor	NA	NA	NA	NA	NA
WP_003723886.1|1351614_1352874_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
WP_003723887.1|1352992_1353559_+	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_003723888.1|1353593_1354163_+	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003723889.1|1354264_1354807_+	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003723890.1|1354816_1355680_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_003723891.1|1355676_1356462_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	39.2	3.0e-26
WP_003723892.1|1356595_1357456_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_003732799.1|1357726_1359805_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.5	3.2e-107
WP_015454658.1|1359867_1361172_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_003724000.1|1361454_1362357_+	tyrosine recombinase XerC	NA	A0A097EYL9	Mycobacterium_phage	28.6	1.2e-13
WP_003724001.1|1362377_1362917_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003732800.1|1362930_1364340_+|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	28.7	3.7e-43
>prophage 5
NZ_CP028183	Listeria monocytogenes strain CFSAN054109 chromosome, complete genome	3062735	1899319	1907605	3062735		Synechococcus_phage(33.33%)	8	NA	NA
WP_003722243.1|1899319_1899886_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.9	7.0e-25
WP_003733242.1|1899882_1900932_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.5	4.6e-62
WP_003722245.1|1900950_1902378_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
WP_031669014.1|1902362_1904582_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.4	1.5e-160
WP_003722247.1|1904574_1905258_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_015454911.1|1905261_1905507_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_014931516.1|1905518_1906232_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	37.8	8.8e-41
WP_003733238.1|1906312_1907605_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.6	7.2e-17
>prophage 6
NZ_CP028183	Listeria monocytogenes strain CFSAN054109 chromosome, complete genome	3062735	2422687	2459908	3062735	holin,tail,terminase	Listeria_phage(97.87%)	50	NA	NA
WP_003769913.1|2422687_2422894_+	hypothetical protein	NA	A0A059T7Z0	Listeria_phage	82.8	1.3e-16
WP_012951560.1|2423109_2424108_-	DUF3644 domain-containing protein	NA	A0A0N9RUA4	Staphylococcus_phage	44.8	3.9e-71
WP_061729887.1|2424211_2425060_-	peptidase M15	NA	A0A059T7Y8	Listeria_phage	82.7	2.0e-129
WP_003722522.1|2425059_2425341_-|holin	holin	holin	A8ASL4	Listeria_phage	94.6	3.4e-41
WP_003722523.1|2425353_2425719_-	hypothetical protein	NA	Q9T1A0	Listeria_phage	100.0	7.4e-12
WP_023553771.1|2425757_2427923_-	hypothetical protein	NA	A8ATW1	Listeria_phage	94.3	0.0e+00
WP_077426126.1|2427935_2429504_-|tail	phage tail protein	tail	A8ATW0	Listeria_phage	98.9	9.8e-303
WP_061107055.1|2429500_2434300_-|tail	phage tail tape measure protein	tail	A8ATV9	Listeria_phage	85.9	0.0e+00
WP_072218925.1|2434304_2434616_-	hypothetical protein	NA	A0A0B5D116	Listeria_phage	95.6	2.2e-41
WP_039154114.1|2434612_2435044_-	hypothetical protein	NA	A8ATV7	Listeria_phage	95.8	2.4e-70
WP_039154117.1|2435099_2435789_-	Ig domain-containing protein	NA	A0A0B5CYK8	Listeria_phage	84.3	4.9e-97
WP_003745007.1|2435793_2436165_-	hypothetical protein	NA	A0A0B5CTY4	Listeria_phage	100.0	1.1e-63
WP_039154123.1|2436161_2436479_-	HK97 gp10 family phage protein	NA	A8ATV4	Listeria_phage	98.1	1.9e-51
WP_026747241.1|2436468_2436834_-	hypothetical protein	NA	A8ATV3	Listeria_phage	90.1	3.3e-60
WP_039154131.1|2436833_2437187_-	hypothetical protein	NA	A8ATV2	Listeria_phage	98.3	1.1e-60
WP_003723787.1|2437356_2438229_-	hypothetical protein	NA	A0A0B5CTX8	Listeria_phage	93.8	2.3e-152
WP_039154134.1|2438251_2438806_-	hypothetical protein	NA	A8ATU9	Listeria_phage	99.5	5.1e-89
WP_015987421.1|2438901_2439942_-	hypothetical protein	NA	A8ATU8	Listeria_phage	100.0	1.6e-200
WP_107176694.1|2439946_2441503_-	hypothetical protein	NA	A8ATU7	Listeria_phage	99.8	5.3e-301
WP_033918288.1|2441517_2442837_-|terminase	PBSX family phage terminase large subunit	terminase	A8ATU6	Listeria_phage	99.8	1.5e-264
WP_039154140.1|2442829_2443570_-	hypothetical protein	NA	A8ATU5	Listeria_phage	99.2	3.1e-134
WP_003725074.1|2443609_2443837_-	hypothetical protein	NA	A0A0B5CTV3	Listeria_phage	94.7	1.8e-32
WP_039154144.1|2444097_2444670_-	sigma-70 family RNA polymerase sigma factor	NA	A0A0B5D145	Listeria_phage	96.8	3.3e-99
WP_003734975.1|2444757_2444913_-	DUF3954 domain-containing protein	NA	A0A0B5D0E9	Listeria_phage	98.0	1.1e-22
WP_003734977.1|2445057_2445462_-	endodeoxyribonuclease	NA	A8AU00	Listeria_phage	97.8	3.5e-71
WP_107176695.1|2445427_2445568_-	BH0509 family protein	NA	A8ATZ9	Listeria_phage	91.3	2.1e-15
WP_039154147.1|2445564_2445870_-	hypothetical protein	NA	A8ATZ8	Listeria_phage	82.2	2.5e-37
WP_031669403.1|2445901_2446384_-	single-stranded DNA-binding protein	NA	A0A059T5E0	Listeria_phage	71.2	2.0e-57
WP_031669401.1|2446937_2447339_-	hypothetical protein	NA	R4ICD6	Listeria_phage	52.9	1.8e-30
WP_077315975.1|2447588_2447831_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_031669397.1|2447886_2448096_-	hypothetical protein	NA	A8ASN7	Listeria_phage	64.2	1.6e-14
WP_061107056.1|2448270_2449233_-	DnaD domain protein	NA	A8ASN4	Listeria_phage	86.1	3.7e-151
WP_039153053.1|2449249_2449909_-	ERF family protein	NA	A8ASN3	Listeria_phage	93.2	2.7e-92
WP_039153051.1|2449914_2450391_-	siphovirus Gp157 family protein	NA	A8ASN2	Listeria_phage	94.9	7.6e-57
WP_015987074.1|2450387_2450582_-	hypothetical protein	NA	A8ASN1	Listeria_phage	100.0	7.1e-30
WP_039153046.1|2450886_2451075_-	hypothetical protein	NA	Q9T175	Listeria_phage	80.6	9.1e-22
WP_039153044.1|2451180_2451396_-	hypothetical protein	NA	Q9T176	Listeria_phage	88.7	2.4e-26
WP_039153042.1|2451392_2451926_-	hypothetical protein	NA	A8ATY1	Listeria_phage	87.9	1.3e-78
WP_039153040.1|2452050_2452830_-	antirepressor	NA	A8ASM6	Listeria_phage	96.9	1.8e-140
WP_003731223.1|2452893_2453436_+	hypothetical protein	NA	A8ATX9	Listeria_phage	100.0	2.8e-95
WP_003731222.1|2453413_2453767_-	hypothetical protein	NA	A8ATX8	Listeria_phage	100.0	9.9e-54
WP_015987418.1|2453763_2454000_-	hypothetical protein	NA	A8ATX7	Listeria_phage	100.0	1.1e-37
WP_003719466.1|2454064_2454268_+	hypothetical protein	NA	A0A0B5D131	Listeria_phage	100.0	9.8e-30
WP_039153036.1|2454326_2454539_-	helix-turn-helix domain-containing protein	NA	A0A0B5D0D3	Listeria_phage	97.1	1.1e-31
WP_039153035.1|2454704_2455127_+	helix-turn-helix domain-containing protein	NA	A0A0B5CYL9	Listeria_phage	97.1	3.4e-69
WP_039153033.1|2455142_2455568_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0B5CTZ7	Listeria_phage	99.3	3.8e-76
WP_039153031.1|2455582_2456188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039153029.1|2456243_2456774_+	hypothetical protein	NA	A0A0B5D0D1	Listeria_phage	24.7	9.8e-05
WP_012951969.1|2456974_2458489_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_097516213.1|2458549_2459908_+	recombinase family protein	NA	Q9T193	Listeria_phage	96.2	4.9e-250
>prophage 7
NZ_CP028183	Listeria monocytogenes strain CFSAN054109 chromosome, complete genome	3062735	2596442	2640145	3062735	capsid,portal,plate,tail,terminase,holin,integrase	Listeria_phage(95.16%)	66	2596832:2596847	2637762:2637777
WP_003722598.1|2596442_2596778_+	membrane protein	NA	S5MNN8	Brevibacillus_phage	76.6	6.0e-16
2596832:2596847	attL	TTATGCCCTCGGAGGG	NA	NA	NA	NA
WP_003731279.1|2597029_2597233_-	hypothetical protein	NA	A8ATX1	Listeria_phage	100.0	2.7e-32
WP_009924650.1|2597229_2597463_-	hypothetical protein	NA	A8ATX0	Listeria_phage	100.0	3.3e-37
WP_009924649.1|2597762_2597996_+	hypothetical protein	NA	A8ATW9	Listeria_phage	48.1	9.2e-08
WP_003722517.1|2598024_2598396_+	anti-CRISPR protein AcrIIA2	NA	A0A059T5F6	Listeria_phage	92.7	5.3e-58
WP_031669445.1|2598401_2598851_+	anti-CRISPR protein AcrIIA1	NA	A8ATW7	Listeria_phage	99.3	6.9e-76
WP_009926666.1|2598875_2599373_+	AP2 domain-containing protein	NA	A8ATW6	Listeria_phage	97.6	1.8e-88
WP_010989943.1|2599449_2600001_-	hypothetical protein	NA	A8ASL6	Listeria_phage	95.6	7.4e-96
WP_033919168.1|2600494_2601340_-	peptidase M15	NA	A0A059T7Y8	Listeria_phage	95.8	2.6e-140
WP_003722522.1|2601339_2601621_-|holin	holin	holin	A8ASL4	Listeria_phage	94.6	3.4e-41
WP_003722523.1|2601633_2601999_-	hypothetical protein	NA	Q9T1A0	Listeria_phage	100.0	7.4e-12
WP_003722524.1|2602026_2602185_-	hypothetical protein	NA	Q9T1A1	Listeria_phage	100.0	6.0e-19
WP_003722525.1|2602189_2602507_-	hypothetical protein	NA	Q9T1A2	Listeria_phage	100.0	6.2e-55
WP_003722526.1|2602518_2603592_-|plate	phage baseplate upper protein	plate	Q9T1A3	Listeria_phage	100.0	4.5e-198
WP_003722527.1|2603591_2604620_-	hypothetical protein	NA	Q9T1A4	Listeria_phage	100.0	4.6e-192
WP_031669437.1|2604620_2605646_-	phage minor structural protein	NA	Q9T1A5	Listeria_phage	97.9	8.1e-197
WP_003722529.1|2605654_2606473_-|tail	phage tail family protein	tail	Q9T1A6	Listeria_phage	91.9	6.8e-146
WP_031669435.1|2606474_2611859_-	tape measure protein	NA	Q9T1A7	Listeria_phage	89.7	0.0e+00
WP_003735024.1|2611869_2612469_-	hypothetical protein	NA	A0A0B5CTW0	Listeria_phage	72.0	1.9e-76
WP_031669433.1|2612474_2612897_-|tail	phage tail assembly chaperone	tail	Q9T1A9	Listeria_phage	97.1	2.2e-68
WP_031669432.1|2612952_2613285_-	Ig domain-containing protein	NA	Q9T1B0	Listeria_phage	97.2	7.7e-48
WP_031669430.1|2613214_2613652_-	hypothetical protein	NA	A0A0B5CYN3	Listeria_phage	98.6	7.2e-78
WP_003727788.1|2613654_2614062_-	hypothetical protein	NA	Q9T1B2	Listeria_phage	98.5	9.0e-67
WP_031669428.1|2614061_2614400_-	hypothetical protein	NA	Q9T1B3	Listeria_phage	99.1	2.9e-58
WP_031669427.1|2614399_2614762_-	hypothetical protein	NA	A0A059T658	Listeria_phage	95.8	6.0e-62
WP_031669425.1|2614761_2615157_-	hypothetical protein	NA	A0A0B5D0F6	Listeria_phage	96.2	1.5e-63
WP_072217189.1|2615158_2615317_-	hypothetical protein	NA	A8ASJ7	Listeria_phage	98.1	5.1e-18
WP_031669424.1|2615316_2616216_-|capsid	phage major capsid protein	capsid	A0A0B5CU19	Listeria_phage	99.7	2.0e-167
WP_031669422.1|2616239_2616809_-	scaffolding protein	NA	A0A0B5CTV7	Listeria_phage	98.4	3.1e-81
WP_031669420.1|2616887_2618027_-	hypothetical protein	NA	A0A0B5D147	Listeria_phage	95.8	3.2e-202
WP_031669418.1|2618032_2619523_-|portal	phage portal protein	portal	Q9T1C0	Listeria_phage	98.2	7.2e-279
WP_031669417.1|2619535_2620867_-|terminase	PBSX family phage terminase large subunit	terminase	A8ASJ2	Listeria_phage	94.1	1.6e-250
WP_031669414.1|2620835_2621378_-|terminase	terminase small subunit	terminase	A0A0B5CU16	Listeria_phage	89.8	3.1e-78
WP_096827923.1|2621421_2621859_-	hypothetical protein	NA	A8ASQ1	Listeria_phage	39.4	3.3e-14
WP_031669411.1|2621947_2622505_-	hypothetical protein	NA	A8ASQ2	Listeria_phage	87.1	1.6e-82
WP_031669409.1|2622765_2623200_-	hypothetical protein	NA	A8ASQ1	Listeria_phage	88.9	3.0e-68
WP_031669408.1|2623363_2623747_-	DUF2481 family protein	NA	A8ASP8	Listeria_phage	56.7	2.3e-35
WP_031669406.1|2623750_2624155_-	DUF1064 domain-containing protein	NA	A8ASP7	Listeria_phage	83.6	2.2e-57
WP_031669404.1|2624099_2624282_-	hypothetical protein	NA	A8ASP6	Listeria_phage	81.0	2.2e-17
WP_031669403.1|2624300_2624783_-	single-stranded DNA-binding protein	NA	A0A059T5E0	Listeria_phage	71.2	2.0e-57
WP_031669401.1|2625336_2625738_-	hypothetical protein	NA	R4ICD6	Listeria_phage	52.9	1.8e-30
WP_077315975.1|2625987_2626230_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_031669397.1|2626285_2626495_-	hypothetical protein	NA	A8ASN7	Listeria_phage	64.2	1.6e-14
WP_031641572.1|2626669_2627593_-	DnaD domain-containing protein	NA	A8ATY7	Listeria_phage	90.6	2.3e-150
WP_031644198.1|2627612_2628428_-	recombinase RecT	NA	Q9T172	Listeria_phage	94.8	1.7e-144
WP_031669395.1|2628430_2629390_-	hypothetical protein	NA	Q9T173	Listeria_phage	83.1	2.8e-151
WP_003733629.1|2629621_2629810_-	hypothetical protein	NA	Q9T175	Listeria_phage	80.6	1.2e-21
WP_031669394.1|2629914_2630151_-	DUF771 domain-containing protein	NA	A8ATY2	Listeria_phage	88.5	1.9e-37
WP_031669393.1|2630156_2630681_-	hypothetical protein	NA	A8ASM7	Listeria_phage	90.8	8.3e-81
WP_031644189.1|2630802_2631582_-	antirepressor	NA	A0A059T6E7	Listeria_phage	96.5	7.6e-139
WP_015455157.1|2631645_2631843_+	hypothetical protein	NA	Q9T179	Listeria_phage	100.0	6.2e-21
WP_003727747.1|2631844_2632126_-	hypothetical protein	NA	A0A0B5CTX3	Listeria_phage	100.0	1.0e-40
WP_003733634.1|2632122_2632359_-	hypothetical protein	NA	A0A059T5E9	Listeria_phage	100.0	3.3e-37
WP_003727745.1|2632370_2632565_-	hypothetical protein	NA	A0A059T6E5	Listeria_phage	96.9	6.3e-26
WP_003727743.1|2632789_2633056_-	hypothetical protein	NA	A0A059T7Q1	Listeria_phage	100.0	2.5e-41
WP_046155079.1|2633073_2633385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003770002.1|2633344_2633530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012582375.1|2633550_2633784_-	helix-turn-helix transcriptional regulator	NA	A8ASM3	Listeria_phage	95.9	1.6e-31
WP_031669386.1|2633946_2634423_+	helix-turn-helix transcriptional regulator	NA	A8ASM2	Listeria_phage	80.3	4.5e-57
WP_012582373.1|2634578_2634746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003747290.1|2634801_2635020_+	hypothetical protein	NA	A0A059T6E3	Listeria_phage	81.9	2.4e-26
WP_031669383.1|2635035_2635758_+	hypothetical protein	NA	A0A059T7P9	Listeria_phage	99.6	8.7e-105
WP_031669381.1|2635778_2636486_+	hypothetical protein	NA	A0A0B5CTT6	Listeria_phage	74.0	3.1e-91
WP_031669379.1|2636549_2637680_+|integrase	site-specific integrase	integrase	A8ATX2	Listeria_phage	93.4	2.3e-200
WP_015455208.1|2637955_2639392_-	GlcNAc-binding protein A	NA	A0A2D1GD28	Mycobacterium_phage	29.1	4.4e-07
2637762:2637777	attR	TTATGCCCTCGGAGGG	NA	NA	NA	NA
WP_003722600.1|2639548_2640145_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.4	6.6e-58
>prophage 8
NZ_CP028183	Listeria monocytogenes strain CFSAN054109 chromosome, complete genome	3062735	2644061	2651905	3062735		Streptococcus_phage(50.0%)	7	NA	NA
WP_003722604.1|2644061_2645033_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
WP_003722605.1|2645040_2646009_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.3	6.7e-68
WP_003722606.1|2646010_2646886_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	1.9e-08
WP_031669377.1|2646993_2648724_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.8	3.9e-175
WP_020246727.1|2648765_2649827_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_009924988.1|2649843_2650827_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	37.2	2.6e-51
WP_003722610.1|2650945_2651905_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
>prophage 1
NZ_CP028184	Listeria monocytogenes strain CFSAN054109 plasmid pGMI16-004, complete sequence	62214	0	11746	62214	protease	Streptococcus_phage(100.0%)	16	NA	NA
WP_012952148.1|1481_1673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031669346.1|1679_2066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077418284.1|2081_3341_+	type II/IV secretion system ATPase subunit	NA	NA	NA	NA	NA
WP_031669342.1|3312_4125_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009912433.1|4124_4898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012952153.1|4898_5255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009911416.1|5650_5893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012952155.1|5946_6150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031669339.1|6166_6805_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031669337.1|6816_7320_+	DUF669 domain-containing protein	NA	NA	NA	NA	NA
WP_009911422.1|7417_7603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012952158.1|7626_7914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072240426.1|7999_8701_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_031669333.1|8721_9294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_126290690.1|9310_9589_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031669330.1|9601_11746_+	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	35.7	8.1e-82
>prophage 2
NZ_CP028184	Listeria monocytogenes strain CFSAN054109 plasmid pGMI16-004, complete sequence	62214	20883	21924	62214		Streptococcus_phage(100.0%)	1	NA	NA
WP_049955712.1|20883_21924_+	hypothetical protein	NA	A0A1S5SEZ8	Streptococcus_phage	49.6	1.9e-28
>prophage 3
NZ_CP028184	Listeria monocytogenes strain CFSAN054109 plasmid pGMI16-004, complete sequence	62214	26273	53468	62214	protease,transposase	Enterococcus_phage(15.38%)	29	NA	NA
WP_009917205.1|26273_27038_+	Fic family protein	NA	A0A0G3Y4Q5	Ostreid_herpesvirus	27.5	8.3e-05
WP_031641557.1|27157_27688_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096832446.1|27791_28929_+|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	69.1	4.1e-48
WP_003728486.1|28993_29329_-	helix-turn-helix transcriptional regulator	NA	A0A139ZPK3	Marinitoga_camini_virus	35.0	2.8e-05
WP_011011011.1|29502_29901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012952173.1|30613_30958_+	TnpV protein	NA	NA	NA	NA	NA
WP_126292250.1|30765_35955_+	DEAD/DEAH box helicase family protein	NA	A0A248SL14	Klebsiella_phage	35.3	4.7e-269
WP_049955716.1|36124_36376_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_031641941.1|36379_37351_+	hypothetical protein	NA	NA	NA	NA	NA
WP_157105793.1|37404_37548_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003728465.1|37573_37915_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_003728464.1|37908_38151_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003728463.1|38211_38463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031641563.1|38593_38920_+	hypothetical protein	NA	A0A2K9V3N4	Faecalibacterium_phage	40.8	3.2e-06
WP_003731676.1|38919_39582_+	DUF2786 domain-containing protein	NA	NA	NA	NA	NA
WP_003728521.1|39594_39978_+	DUF3850 domain-containing protein	NA	C9E2N9	Enterococcus_phage	53.4	2.2e-14
WP_031669356.1|40136_40625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_107176699.1|41227_43405_+	hypothetical protein	NA	A0A1B1IUG5	uncultured_Mediterranean_phage	25.0	2.0e-19
WP_003728511.1|43618_44227_+	recombinase family protein	NA	A0A1W5LU24	Ralstonia_phage	42.9	1.0e-21
WP_003728510.1|44216_44444_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003731679.1|44563_44842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003728509.1|44804_45041_+	helix-turn-helix transcriptional regulator	NA	A0A097PBE6	Streptococcus_pyogenes_phage	53.4	6.7e-14
WP_003728507.1|45468_47583_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	39.1	3.4e-117
WP_013315188.1|47858_49199_+|transposase	IS3 family transposase	transposase	A0A0C5AC89	Paenibacillus_phage	38.6	1.1e-31
WP_003728505.1|49373_50108_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_003728504.1|50312_50657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077418289.1|50644_51925_+	Y-family DNA polymerase	NA	O64031	Bacillus_phage	45.1	4.0e-92
WP_003726389.1|52297_52630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_026747205.1|52622_53468_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	42.6	3.4e-52
>prophage 4
NZ_CP028184	Listeria monocytogenes strain CFSAN054109 plasmid pGMI16-004, complete sequence	62214	56748	60861	62214	transposase	Salmonella_phage(33.33%)	3	NA	NA
WP_031669350.1|56748_59664_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	36.7	3.2e-174
WP_003728468.1|59667_60222_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	53.4	7.0e-38
WP_003728467.1|60501_60861_+	Cd(II)-sensing metalloregulatory transcriptional repressor CadC	NA	E4ZFI8	Streptococcus_phage	50.0	3.1e-26
