The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP028165	Staphylococcus aureus strain CFSAN064037 chromosome, complete genome	2790673	316481	324793	2790673	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|316481_317267_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924215.1|317392_318283_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062177.1|318292_319639_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683919.1|319752_320853_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_000624562.1|320855_321533_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|321663_322770_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_103145517.1|322993_324793_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	35.8	2.3e-53
>prophage 2
NZ_CP028165	Staphylococcus aureus strain CFSAN064037 chromosome, complete genome	2790673	394446	403489	2790673	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364543.1|394446_394965_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_000594980.1|394986_397260_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.5	4.7e-64
WP_000749803.1|397462_399742_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|400016_400277_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|400295_401435_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019179.1|401457_402483_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|402484_403489_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 3
NZ_CP028165	Staphylococcus aureus strain CFSAN064037 chromosome, complete genome	2790673	529011	647869	2790673	tRNA,holin,tail,protease,plate,transposase,head,portal,integrase,terminase,capsid	Staphylococcus_phage(86.61%)	128	584065:584080	656900:656915
WP_107240616.1|529011_535338_-	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	82.2	1.9e-267
WP_000836469.1|535664_535976_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	96.1	4.5e-50
WP_001803813.1|535997_538415_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025061.1|538702_539884_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|539993_540947_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764420.1|540943_541507_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	98.9	1.2e-101
WP_000757543.1|541626_542028_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|542601_543429_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|543431_543551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|543662_544664_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|544785_545250_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159025.1|545262_546444_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	8.6e-227
WP_000493882.1|546454_547087_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	1.1e-111
WP_000077346.1|547093_548137_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.1	3.1e-196
WP_020977352.1|548617_550120_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.1e-29
WP_000221182.1|550641_550956_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	96.2	3.7e-52
WP_000989111.1|550955_552248_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	98.1	1.0e-225
WP_000163240.1|552265_552661_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	2.4e-72
WP_001032833.1|553009_553864_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|554139_554364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671045.1|554562_555033_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	96.8	4.8e-80
WP_001153740.1|555145_555589_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|555575_556019_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168908.1|556316_556952_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|557377_558091_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|558348_558651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200550.1|558906_559272_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.2e-59
WP_000623471.1|559268_559622_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453300.1|559871_560705_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	2.7e-158
WP_000366159.1|560916_561825_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	4.4e-138
WP_107240617.1|561968_563285_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	32.8	4.6e-43
WP_000933822.1|563454_564648_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109907.1|565019_566612_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_001803969.1|566908_567655_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	1.6e-141
WP_000669096.1|567659_568133_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	97.5	6.1e-83
WP_000718107.1|568198_568456_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778531.1|568452_569454_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	1.9e-182
WP_000348361.1|569458_570937_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	5.8e-281
WP_001803971.1|571095_571551_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	2.8e-77
WP_001803972.1|571853_572504_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	78.7	2.5e-50
WP_000070661.1|572584_573580_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	95.6	4.3e-70
WP_000669041.1|573655_574282_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	80.8	7.4e-76
WP_000627545.1|574322_574667_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.0e-55
WP_000414229.1|574764_575337_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
WP_000190484.1|575712_576549_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000809858.1|577355_577541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|577542_577719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|577729_578113_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000747809.1|578799_579246_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001801861.1|579697_579793_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791232.1|579915_580017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_107240618.1|580679_584792_-	ATP-binding protein	NA	A0A2H4PQT3	Staphylococcus_phage	98.5	0.0e+00
584065:584080	attL	TTATCTAAAATATCTT	NA	NA	NA	NA
WP_000072598.1|585554_586754_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	97.7	3.7e-225
WP_043039510.1|586746_588303_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.8	4.4e-287
WP_103145528.1|588656_589376_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	95.4	8.9e-126
WP_001039437.1|589500_590220_-|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	86.6	7.1e-115
WP_001038876.1|590277_591000_-|protease	serine protease	protease	A0A2H4PQN0	Staphylococcus_phage	84.6	3.5e-114
WP_001043716.1|591057_591780_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	94.6	9.0e-126
WP_001039436.1|591904_592612_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	96.2	8.2e-124
WP_001092777.1|593566_594148_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	60.1	1.9e-49
WP_000550244.1|595080_595554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000543851.1|595558_596350_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000782469.1|596719_597703_-	leukocidin/hemolysin toxin family protein	NA	A0A2H4PQH7	Staphylococcus_phage	98.8	6.8e-185
WP_000473589.1|597704_598640_-	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	98.4	1.1e-171
WP_001086050.1|599520_599925_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	82.1	3.4e-58
WP_107240619.1|599988_600777_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.4	1.1e-140
WP_000825945.1|602097_602562_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	94.8	6.1e-27
WP_107240620.1|603766_604771_-	restriction endonuclease subunit S	NA	A0A1W6JNN3	Staphylococcus_phage	42.0	8.0e-64
WP_107240621.1|604754_606647_-	N-6 DNA methylase	NA	A0A1W6JNK1	Staphylococcus_phage	70.9	1.9e-268
WP_107240622.1|607034_608480_-	SH3 domain-containing protein	NA	S4V6E6	Staphylococcus_phage	97.7	1.5e-289
WP_107240623.1|608460_608898_-|holin	phage holin	holin	A0A0K1LLA7	Staphylococcus_phage	96.6	6.5e-71
WP_107240624.1|608948_610961_-|plate	BppU family phage baseplate upper protein	plate	Q4ZA81	Staphylococcus_virus	96.3	0.0e+00
WP_107240625.1|610973_612848_-	glucosaminidase domain-containing protein	NA	Q4ZBX1	Staphylococcus_virus	91.5	0.0e+00
WP_107240626.1|612984_613284_-	DUF2951 family protein	NA	B7T0E7	Staphylococcus_virus	78.8	2.5e-29
WP_001790193.1|613324_613498_-	XkdX family protein	NA	Q8LTH6	Staphylococcus_phage	100.0	1.7e-27
WP_065315646.1|613507_613885_-	DUF2977 domain-containing protein	NA	Q4ZA86	Staphylococcus_virus	99.2	2.6e-60
WP_107240627.1|613884_615708_-|plate	BppU family phage baseplate upper protein	plate	Q4ZA88	Staphylococcus_virus	99.5	0.0e+00
WP_107240628.1|615707_617606_-	hypothetical protein	NA	A0A059T5B2	Staphylococcus_phage	98.1	0.0e+00
WP_107240629.1|617618_619505_-|tail	phage tail protein	tail	A0A059T677	Staphylococcus_phage	99.8	0.0e+00
WP_107240630.1|619515_620457_-|tail	phage tail family protein	tail	A0A059T7K5	Staphylococcus_phage	98.4	1.2e-178
WP_107240631.1|620471_623357_-|terminase	terminase	terminase	M9NRJ5	Staphylococcus_phage	95.8	0.0e+00
WP_031911809.1|623360_623645_-	hypothetical protein	NA	A0A059T626	Staphylococcus_phage	97.9	3.4e-44
WP_000134336.1|623689_624202_-	hypothetical protein	NA	A0A059T5B1	Staphylococcus_phage	100.0	5.4e-93
WP_000057585.1|624268_624826_-	hypothetical protein	NA	A0A059T675	Staphylococcus_phage	100.0	4.1e-102
WP_000270192.1|624826_625252_-	DUF3168 domain-containing protein	NA	Q4ZBQ9	Staphylococcus_phage	100.0	5.5e-75
WP_107240632.1|625264_625678_-	HK97 gp10 family phage protein	NA	A0A0N9BAY5	Staphylococcus_phage	99.3	2.4e-75
WP_107240633.1|625664_626000_-|head	phage head closure protein	head	Q4ZBR2	Staphylococcus_phage	99.1	2.0e-59
WP_046597552.1|626011_626362_-|head,tail	phage head-tail adapter protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	98.3	2.7e-59
WP_000002930.1|626367_626511_-	hypothetical protein	NA	A0A059T673	Staphylococcus_phage	100.0	7.9e-18
WP_000235170.1|626522_627437_-|capsid	phage major capsid protein	capsid	A0A059T7K3	Staphylococcus_phage	99.3	1.3e-169
WP_107240634.1|627453_628038_-	DUF4355 domain-containing protein	NA	M9NRJ1	Staphylococcus_phage	99.5	9.9e-75
WP_107240635.1|628133_629084_-|head	phage head morphogenesis protein	head	A0A0H3U2Z4	Staphylococcus_phage	98.4	2.3e-174
WP_107240636.1|629052_630477_-|portal	phage portal protein	portal	A0A0E3T9I6	Staphylococcus_phage	98.3	3.8e-269
WP_107240637.1|630473_631697_-|terminase	PBSX family phage terminase large subunit	terminase	A0A059T7K2	Staphylococcus_phage	99.0	3.5e-239
WP_000594089.1|631689_632184_-|terminase	terminase small subunit	terminase	A0A059T7P8	Staphylococcus_phage	89.6	4.9e-67
WP_000162701.1|632511_632934_-	RinA family phage transcriptional activator	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
WP_000989998.1|632957_633104_-	hypothetical protein	NA	A0A059T5A8	Staphylococcus_phage	100.0	2.2e-15
WP_046597490.1|633104_633470_-	hypothetical protein	NA	A0A059T670	Staphylococcus_phage	100.0	1.6e-59
WP_050957894.1|633470_633644_-	transcriptional regulator	NA	A0A059T7K1	Staphylococcus_phage	100.0	2.2e-22
WP_046597488.1|633645_633834_-	hypothetical protein	NA	A0A059T7P6	Staphylococcus_phage	98.4	1.4e-27
WP_046597487.1|633830_634037_-	DUF1381 domain-containing protein	NA	A0A059T622	Staphylococcus_phage	100.0	1.3e-21
WP_107240638.1|634073_634610_-	dUTP diphosphatase	NA	A0A1P8L6E0	Staphylococcus_phage	98.9	3.0e-94
WP_001065080.1|634602_634851_-	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	98.8	1.6e-37
WP_000695750.1|635118_635529_-	hypothetical protein	NA	A0A1P8CN10	Staphylococcus_phage	69.1	2.1e-47
WP_000774794.1|635542_635785_-	hypothetical protein	NA	A0A2I6PDM0	Staphylococcus_phage	97.5	8.6e-41
WP_057485226.1|635788_636157_-	hypothetical protein	NA	A0A0H4J337	Staphylococcus_phage	98.4	2.2e-51
WP_070001472.1|636157_636343_-	DUF3113 family protein	NA	A0A059T620	Staphylococcus_phage	96.7	3.5e-26
WP_107240639.1|636347_636752_-	DUF1064 domain-containing protein	NA	Q6R835	Staphylococcus_virus	97.0	8.7e-70
WP_001123688.1|636762_636984_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_031902399.1|636986_637202_-	hypothetical protein	NA	A9CR72	Staphylococcus_phage	98.6	1.2e-33
WP_107240640.1|637198_638440_-	AAA family ATPase	NA	Q8SDW1	Staphylococcus_phage	99.0	1.2e-226
WP_107240641.1|638436_638793_-	hypothetical protein	NA	M9NS37	Staphylococcus_phage	99.2	6.9e-63
WP_107240642.1|638792_639548_-	DnaD domain protein	NA	C8CGZ1	Staphylococcus_phage	91.2	1.1e-129
WP_046597477.1|640228_640654_-	single-stranded DNA-binding protein	NA	A0A0E3XC62	Staphylococcus_phage	100.0	4.0e-73
WP_001043065.1|640653_641292_-	ERF family protein	NA	R4II59	Staphylococcus_phage	100.0	1.7e-115
WP_107240643.1|641291_641771_-	siphovirus Gp157 family protein	NA	Q4ZAD7	Staphylococcus_virus	97.5	3.4e-81
WP_000291089.1|641785_642046_-	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	100.0	1.2e-43
WP_000048119.1|642139_642301_-	DUF1270 family protein	NA	A0A059T7J6	Staphylococcus_phage	98.1	4.3e-20
WP_001093507.1|642315_642531_-	DUF771 domain-containing protein	NA	B7T098	Staphylococcus_virus	100.0	6.3e-35
WP_050972079.1|642543_643299_-	phage antirepressor KilAC domain-containing protein	NA	A0A1X9H0A0	Staphylococcus_phage	100.0	8.7e-140
WP_000933365.1|643300_643486_-	helix-turn-helix transcriptional regulator	NA	A0A0H4IP57	Staphylococcus_phage	100.0	1.3e-25
WP_000394410.1|643931_644414_+	hypothetical protein	NA	A0A0N9BAX2	Staphylococcus_phage	100.0	1.1e-82
WP_000398749.1|644464_644632_-	hypothetical protein	NA	Q4ZA65	Staphylococcus_virus	98.2	9.8e-20
WP_107240644.1|644647_644887_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J306	uncultured_Caudovirales_phage	97.5	3.0e-38
WP_107240645.1|645079_645412_+	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	73.6	6.1e-37
WP_107240646.1|645423_645885_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2I6PEK4	Staphylococcus_phage	80.8	5.3e-63
WP_107240647.1|645916_646597_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A2H4PQQ5	Staphylococcus_phage	99.1	5.7e-122
WP_000115736.1|646804_647869_+|integrase	tyrosine-type recombinase/integrase	integrase	B7T092	Staphylococcus_virus	99.2	2.3e-202
656900:656915	attR	AAGATATTTTAGATAA	NA	NA	NA	NA
>prophage 4
NZ_CP028165	Staphylococcus aureus strain CFSAN064037 chromosome, complete genome	2790673	791062	803332	2790673	coat,integrase,terminase	Staphylococcus_phage(76.47%)	19	786436:786455	801355:801374
786436:786455	attL	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_103145489.1|791062_791632_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.4	5.1e-100
WP_103145497.1|791628_791841_-	pathogenicity island family protein	NA	Q4ZE86	Staphylococcus_phage	87.1	3.3e-28
WP_107240651.1|791972_792500_-|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	96.6	1.2e-87
WP_000448775.1|792550_792769_-	hypothetical protein	NA	NA	NA	NA	NA
WP_103145488.1|792786_793365_-	pathogenicity island protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.2e-27
WP_001190600.1|793376_793718_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	8.4e-58
WP_103145487.1|794064_794706_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	92.5	1.2e-110
WP_103145486.1|794702_795083_-	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	97.6	4.5e-68
WP_103145485.1|795392_797102_-	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	93.8	5.1e-305
WP_103145484.1|797115_797985_-	primase C-terminal domain-containing protein	NA	Q4ZE74	Staphylococcus_phage	94.1	4.6e-161
WP_103145483.1|798051_798378_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	77.1	8.9e-41
WP_001058489.1|798380_798590_-	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	98.6	1.6e-30
WP_000784893.1|798582_798729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_103145482.1|798725_799043_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	96.2	1.7e-49
WP_103145481.1|799046_799259_-	helix-turn-helix transcriptional regulator	NA	A0A1W6JQE8	Staphylococcus_phage	82.8	4.9e-24
WP_103145480.1|799421_800099_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	31.8	1.2e-10
WP_103145479.1|800115_801288_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	98.7	7.8e-220
WP_000240646.1|801356_802973_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	1.5e-157
801355:801374	attR	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_000917289.1|803047_803332_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
>prophage 5
NZ_CP028165	Staphylococcus aureus strain CFSAN064037 chromosome, complete genome	2790673	2282454	2290274	2790673		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|2282454_2283510_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|2283509_2284196_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|2284170_2284644_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093557.1|2284985_2285426_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637683.1|2285705_2286290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062966.1|2286388_2287102_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	5.0e-52
WP_000941336.1|2287105_2287525_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|2287526_2288195_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604519.1|2288545_2289139_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	5.8e-38
WP_001217797.1|2289122_2290274_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 6
NZ_CP028165	Staphylococcus aureus strain CFSAN064037 chromosome, complete genome	2790673	2303751	2318353	2790673		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663031.1|2303751_2304810_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	2.3e-21
WP_000197263.1|2305104_2305653_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429017.1|2306254_2307172_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	3.7e-07
WP_000193751.1|2307452_2308958_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930015.1|2309304_2309799_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.8e-52
WP_001068497.1|2309818_2310685_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|2311485_2311884_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855518.1|2311846_2313952_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|2314069_2315041_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_031901244.1|2315486_2315642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|2315680_2316652_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245571.1|2316638_2317595_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	60.0	7.2e-06
WP_000616869.1|2317591_2318353_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	5.0e-18
>prophage 7
NZ_CP028165	Staphylococcus aureus strain CFSAN064037 chromosome, complete genome	2790673	2561186	2569659	2790673		Synechococcus_phage(33.33%)	9	NA	NA
WP_025174670.1|2561186_2561669_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.0	1.2e-20
WP_001010393.1|2561655_2562780_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174052.1|2562783_2563488_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.8e-47
WP_000848350.1|2563487_2563751_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|2563752_2564424_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_043039658.1|2564416_2566606_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.3e-140
WP_000483719.1|2566584_2568069_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.5	5.5e-45
WP_000030807.1|2568061_2569090_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	6.5e-61
WP_000238666.1|2569092_2569659_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
