assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003030025.1_ASM303002v1	NZ_CP028166	Escherichia coli strain CFSAN064036 chromosome, complete genome	1	1528703-1528829	1	CRISPRCasFinder	no		cas3,c2c9_V-U4,DEDDh,DinG,csa3,PD-DExK,WYL	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,DEDDh,DinG,csa3,PD-DExK,WYL	NA,NA	NA|441aa|up_9|NZ_CP028166.1_1506257_1507580_+	pfam02667, SCFA_trans, Short chain fatty acid transporter	NA|395aa|up_8|NZ_CP028166.1_1507610_1508795_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_7|NZ_CP028166.1_1508868_1509645_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_6|NZ_CP028166.1_1509649_1511299_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|208aa|up_5|NZ_CP028166.1_1515837_1516461_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP028166.1_1516457_1518146_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP028166.1_1518294_1520922_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP028166.1_1521068_1521791_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP028166.1_1521918_1525671_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP028166.1_1526366_1528652_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP028166.1_1528885_1530016_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP028166.1_1530015_1530270_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP028166.1_1530323_1530974_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP028166.1_1531436_1532513_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP028166.1_1532517_1533876_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP028166.1_1534148_1535777_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP028166.1_1535766_1537026_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP028166.1_1537022_1538213_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_8|NZ_CP028166.1_1538405_1539305_+	PRK09956, PRK09956, ISNCY family transposase	NA|62aa|down_9|NZ_CP028166.1_1539317_1539503_+	PRK09956, PRK09956, ISNCY family transposase
GCF_003030025.1_ASM303002v1	NZ_CP028166	Escherichia coli strain CFSAN064036 chromosome, complete genome	2	2114339-2114494	1	PILER-CR	no		cas3,c2c9_V-U4,DEDDh,DinG,csa3,PD-DExK,WYL	Orphan	GCCCGGTTTATCCCCGCTGGCGCGGGGAACACAC	34	0	0	NA	NA	I-E	2	2	Orphan	cas3,c2c9_V-U4,DEDDh,DinG,csa3,PD-DExK,WYL	NA,NA	NA|254aa|up_9|NZ_CP028166.1_2106153_2106915_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP028166.1_2106895_2107945_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP028166.1_2107941_2108421_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP028166.1_2108420_2109131_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP028166.1_2109149_2109461_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP028166.1_2109654_2109978_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP028166.1_2110027_2110633_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP028166.1_2110632_2112060_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP028166.1_2112061_2112970_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP028166.1_2113221_2114259_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|371aa|down_0|NZ_CP028166.1_2114569_2115682_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|51aa|down_1|NZ_CP028166.1_2115874_2116027_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_2|NZ_CP028166.1_2116291_2117026_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_3|NZ_CP028166.1_2117099_2118812_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|down_4|NZ_CP028166.1_2118811_2120611_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|down_5|NZ_CP028166.1_2120926_2121292_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|down_6|NZ_CP028166.1_2121369_2122641_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|down_7|NZ_CP028166.1_2122631_2122892_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|down_8|NZ_CP028166.1_2122908_2123484_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|260aa|down_9|NZ_CP028166.1_2124488_2125268_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]
GCF_003030025.1_ASM303002v1	NZ_CP028166	Escherichia coli strain CFSAN064036 chromosome, complete genome	3	3844189-3844338	2	CRISPRCasFinder	no		cas3,c2c9_V-U4,DEDDh,DinG,csa3,PD-DExK,WYL	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,DEDDh,DinG,csa3,PD-DExK,WYL	NA|528aa|up_5|NZ_CP028166.1_3835361_3836945_+,NA	NA|132aa|up_9|NZ_CP028166.1_3832738_3833134_-	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|238aa|up_8|NZ_CP028166.1_3833264_3833978_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_7|NZ_CP028166.1_3834048_3834642_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_6|NZ_CP028166.1_3834786_3835239_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|528aa|up_5|NZ_CP028166.1_3835361_3836945_+	NA	NA|335aa|up_4|NZ_CP028166.1_3837149_3838154_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_3|NZ_CP028166.1_3838315_3838732_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_2|NZ_CP028166.1_3838777_3839281_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|952aa|up_1|NZ_CP028166.1_3840722_3843578_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP028166.1_3843577_3844021_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP028166.1_3844374_3845886_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP028166.1_3846152_3847253_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP028166.1_3847252_3848335_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP028166.1_3848453_3849956_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP028166.1_3850085_3851105_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|1039aa|down_5|NZ_CP028166.1_3851610_3854727_-	TIGR00348, R_protein, type I site-specific deoxyribonuclease, HsdR family	NA|388aa|down_6|NZ_CP028166.1_3855849_3857012_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|410aa|down_7|NZ_CP028166.1_3857672_3858901_+	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed	NA|519aa|down_8|NZ_CP028166.1_3859097_3860654_-	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM)	NA|278aa|down_9|NZ_CP028166.1_3860959_3861793_+	pfam13708, DUF4942, Domain of unknown function (DUF4942)
GCF_003030025.1_ASM303002v1	NZ_CP028166	Escherichia coli strain CFSAN064036 chromosome, complete genome	4	4108406-4108537	3	CRISPRCasFinder	no		cas3,c2c9_V-U4,DEDDh,DinG,csa3,PD-DExK,WYL	Orphan	TCTCTTCGCTGCTGGATCTGTGGGTTAGTCTGCATT	36	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,DEDDh,DinG,csa3,PD-DExK,WYL	NA,NA	NA|298aa|up_9|NZ_CP028166.1_4093968_4094862_-	PRK09016, PRK09016, carboxylating nicotinate-nucleotide diphosphorylase	NA|184aa|up_8|NZ_CP028166.1_4094949_4095501_+	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA|285aa|up_7|NZ_CP028166.1_4095497_4096352_+	pfam17113, AmpE, Regulatory signalling modulator protein AmpE	NA|317aa|up_6|NZ_CP028166.1_4096381_4097332_-	COG3940, COG3940, Predicted beta-xylosidase [General function prediction only]	NA|469aa|up_5|NZ_CP028166.1_4097331_4098738_-	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]	NA|457aa|up_4|NZ_CP028166.1_4098896_4100267_-	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|255aa|up_3|NZ_CP028166.1_4100810_4101575_+	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|888aa|up_2|NZ_CP028166.1_4101735_4104399_+	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|631aa|up_1|NZ_CP028166.1_4104413_4106306_+	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|475aa|up_0|NZ_CP028166.1_4106630_4108055_+	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|866aa|down_0|NZ_CP028166.1_4110333_4112931_+	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|121aa|down_1|NZ_CP028166.1_4113105_4113468_+	PRK05248, PRK05248, hypothetical protein; Provisional	NA|265aa|down_2|NZ_CP028166.1_4113505_4114300_-	PRK05462, PRK05462, adenosylmethionine decarboxylase	NA|289aa|down_3|NZ_CP028166.1_4114315_4115182_-	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|116aa|down_4|NZ_CP028166.1_4115287_4115635_-	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS)	NA|517aa|down_5|NZ_CP028166.1_4115800_4117351_+	PRK10965, PRK10965, multicopper oxidase; Provisional	NA|797aa|down_6|NZ_CP028166.1_4117552_4119943_-	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|179aa|down_7|NZ_CP028166.1_4120148_4120685_+	PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional	NA|221aa|down_8|NZ_CP028166.1_4120725_4121388_-	PRK10437, PRK10437, carbonic anhydrase; Provisional	NA|309aa|down_9|NZ_CP028166.1_4121496_4122423_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
GCF_003030025.1_ASM303002v1	NZ_CP028166	Escherichia coli strain CFSAN064036 chromosome, complete genome	5	4488715-4488811	4	CRISPRCasFinder	no		cas3,c2c9_V-U4,DEDDh,DinG,csa3,PD-DExK,WYL	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,DEDDh,DinG,csa3,PD-DExK,WYL	NA,NA	NA|454aa|up_9|NZ_CP028166.1_4476495_4477857_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP028166.1_4477913_4479215_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP028166.1_4479236_4480382_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP028166.1_4480609_4481395_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NZ_CP028166.1_4481405_4482641_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP028166.1_4482662_4483712_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP028166.1_4484028_4485696_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP028166.1_4485705_4486965_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP028166.1_4486975_4487791_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP028166.1_4487787_4488681_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP028166.1_4488875_4489943_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP028166.1_4489939_4490449_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP028166.1_4490566_4491289_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP028166.1_4491291_4491786_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP028166.1_4491959_4493345_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP028166.1_4493380_4493902_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP028166.1_4494009_4494222_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP028166.1_4494223_4495090_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP028166.1_4495560_4496103_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP028166.1_4496322_4497015_+	PRK15195, PRK15195, molecular chaperone FimC
