The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	94923	140138	2882275	integrase,tail,protease,capsid,head,holin,portal,plate,terminase	Staphylococcus_phage(92.42%)	66	86356:86371	145562:145577
86356:86371	attL	ATTTTCTAATAAATGA	NA	NA	NA	NA
WP_021285991.1|94923_96378_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N6WMR3	Staphylococcus_phage	99.6	7.5e-289
WP_000339146.1|96389_96692_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|96827_97127_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|97172_97337_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|97329_97719_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_021285990.1|97718_99185_-|plate	phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	99.8	5.8e-273
WP_000429551.1|99184_101095_-	minor structural protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
WP_000179860.1|101110_101401_-	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
WP_000384464.1|101400_102984_-|tail	phage tail protein	tail	A0A2I6PEQ5	Staphylococcus_phage	99.8	9.3e-309
WP_001190533.1|102992_103817_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_103149610.1|103816_110017_-|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	99.2	0.0e+00
WP_000438833.1|110030_110189_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|110230_110581_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|110638_111094_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807536.1|111185_111827_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_015978094.1|111861_112257_-	DUF3168 domain-containing protein	NA	Q4ZCL5	Staphylococcus_virus	100.0	8.8e-67
WP_031776127.1|112257_112659_-	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	99.2	2.3e-67
WP_000395501.1|112655_112988_-	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	100.0	6.2e-58
WP_000050973.1|112999_113278_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142739.1|113346_114510_-|capsid	phage major capsid protein	capsid	A0A2I6PDD7	Staphylococcus_phage	100.0	9.4e-218
WP_031886567.1|114521_115295_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	98.4	3.9e-135
WP_031919077.1|115278_116517_-|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	99.8	4.5e-234
WP_000153540.1|116521_118213_-|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
WP_000778933.1|118202_118508_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000160683.1|118635_118950_-	HNH endonuclease	NA	Q8SDQ2	Staphylococcus_virus	100.0	1.9e-56
WP_000513703.1|119106_119544_-	transcriptional regulator	NA	A0A2K9VBV2	Staphylococcus_phage	99.3	7.9e-77
WP_074370994.1|119556_120924_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	3.9e-263
WP_001794602.1|120904_121195_-	VRR-NUC domain-containing protein	NA	M1T308	Staphylococcus_phage	100.0	4.9e-51
WP_078099040.1|121328_121433_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	97.1	1.8e-11
WP_103149611.1|121535_123983_-	virulence-associated E family protein	NA	Q4ZCG0	Staphylococcus_virus	99.3	0.0e+00
WP_000265252.1|124270_124471_-	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_016187444.1|124538_124691_-	hypothetical protein	NA	M9QRS7	Staphylococcus_phage	100.0	7.6e-19
WP_173677596.1|124687_125077_-	hypothetical protein	NA	M9QX07	Staphylococcus_phage	99.2	1.8e-64
WP_000483477.1|125066_125303_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_000195831.1|125327_125564_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	100.0	1.1e-35
WP_000185654.1|125600_126143_-	dUTP pyrophosphatase	NA	Q4ZD81	Staphylococcus_virus	100.0	1.5e-96
WP_001065023.1|126147_126384_-	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
WP_000144708.1|126376_126685_-	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	100.0	8.1e-52
WP_000979209.1|126681_127029_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_031796932.1|127025_127427_-	hypothetical protein	NA	A0A0N7E0T5	Staphylococcus_phage	99.2	4.6e-71
WP_000693989.1|127429_127636_-	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
WP_031775821.1|127649_127892_-	phage protein	NA	Q8SDR2	Staphylococcus_virus	98.8	3.6e-39
WP_000235324.1|127906_128107_-	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_000022728.1|128109_128367_-	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
WP_000113974.1|128366_128768_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_001164629.1|128767_128953_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_103149614.1|128965_130918_-	DNA polymerase	NA	M9QT72	Staphylococcus_phage	99.2	0.0e+00
WP_000645049.1|130986_131544_-	DUF2815 family protein	NA	A0A2K9VBT2	Staphylococcus_phage	95.7	1.3e-92
WP_031794996.1|131570_132737_-	DUF2800 domain-containing protein	NA	M9QWZ9	Staphylococcus_phage	99.5	1.2e-220
WP_000985976.1|132733_133096_-	hypothetical protein	NA	A0A2I6PF03	Staphylococcus_phage	100.0	4.9e-56
WP_000174994.1|133110_133434_-	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
WP_001285948.1|133512_133674_-	DUF1270 domain-containing protein	NA	A9CR58	Staphylococcus_phage	98.1	1.1e-20
WP_016187436.1|133686_133950_-	helix-turn-helix domain-containing protein	NA	M9QRR6	Staphylococcus_phage	100.0	9.7e-46
WP_001097552.1|133974_134190_-	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_016170627.1|134244_134610_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	99.2	1.2e-62
WP_001025401.1|134578_134824_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_000642492.1|134879_135089_+	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
WP_000939498.1|135078_135222_-	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_001148544.1|135250_136027_-	Rha family transcriptional regulator	NA	A0A2I6PD87	Staphylococcus_phage	100.0	1.1e-140
WP_001121027.1|136040_136277_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PD81	Staphylococcus_phage	100.0	1.5e-37
WP_000333630.1|136428_136743_+	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
WP_000525004.1|136755_137217_+	hypothetical protein	NA	A0A2K9VBR7	Staphylococcus_phage	100.0	1.2e-83
WP_031918390.1|137234_137819_+	hypothetical protein	NA	A0A2I6PD77	Staphylococcus_phage	99.5	6.9e-68
WP_074370993.1|138049_138196_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	93.8	1.7e-15
WP_000191466.1|138192_138807_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_031795352.1|138932_140138_+|integrase	site-specific integrase	integrase	A0A1X9H094	Staphylococcus_phage	99.0	1.6e-220
145562:145577	attR	TCATTTATTAGAAAAT	NA	NA	NA	NA
>prophage 2
NZ_CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	1233439	1316014	2882275	integrase,tail,protease,capsid,head,holin,portal,terminase	Staphylococcus_phage(83.12%)	107	1243560:1243577	1269334:1269351
WP_000197638.1|1233439_1234183_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000917289.1|1234357_1234642_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240642.1|1234717_1236334_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000201398.1|1236874_1237054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000216896.1|1237050_1237677_+	hypothetical protein	NA	C8CH40	Staphylococcus_phage	44.5	2.4e-42
WP_001045074.1|1238215_1239523_-	potassium transporter KtrB	NA	NA	NA	NA	NA
WP_000206618.1|1239905_1241129_-	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000791397.1|1241560_1242616_+	leukocidin/hemolysin toxin family protein	NA	A0A2I6PER8	Staphylococcus_phage	35.4	8.7e-37
WP_000595612.1|1242637_1243654_+	leukocidin/hemolysin toxin family protein	NA	A0A2I6PER8	Staphylococcus_phage	29.3	1.1e-25
1243560:1243577	attL	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
WP_061651379.1|1244797_1245835_-|integrase	site-specific integrase	integrase	A7TWL3	Staphylococcus_phage	99.4	1.1e-177
WP_001549185.1|1246025_1246739_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
WP_000705243.1|1246817_1247000_-	hypothetical protein	NA	R9QT81	Staphylococcus_phage	100.0	5.3e-27
WP_000837517.1|1247155_1247854_-	potassium channel family protein	NA	A0A1B0Y2S3	Lactobacillus_phage	29.8	4.4e-13
WP_031763806.1|1248035_1248668_-	helix-turn-helix domain-containing protein	NA	Q4ZB06	Staphylococcus_virus	90.4	1.9e-103
WP_000192116.1|1248821_1249049_+	helix-turn-helix transcriptional regulator	NA	Q4ZB05	Staphylococcus_virus	98.7	3.5e-36
WP_031763800.1|1249071_1249860_+	phage antirepressor KilAC domain-containing protein	NA	R9QSV3	Staphylococcus_phage	99.6	2.7e-144
WP_001662741.1|1249872_1250316_+	hypothetical protein	NA	Q6R853	Staphylococcus_virus	100.0	2.0e-75
WP_000939495.1|1250330_1250471_+	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
WP_000772137.1|1250463_1250673_-	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
WP_001148337.1|1250729_1251479_+	phage antirepressor KilAC domain-containing protein	NA	Q8SDM9	Staphylococcus_phage	99.6	4.4e-136
WP_000435343.1|1251491_1251752_+	hypothetical protein	NA	A0A2I6PDT7	Staphylococcus_phage	100.0	3.5e-40
WP_001662405.1|1251771_1251909_+	hypothetical protein	NA	A0ZS11	Staphylococcus_virus	97.8	3.7e-17
WP_001120936.1|1251984_1252305_+	DUF771 domain-containing protein	NA	A0A1W6JPI1	Staphylococcus_phage	100.0	7.4e-56
WP_000066011.1|1252301_1252463_+	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000291488.1|1252555_1252816_+	DUF1108 family protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
WP_001205732.1|1252824_1253088_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_064127293.1|1253084_1255040_+	AAA family ATPase	NA	R9QT82	Staphylococcus_phage	99.4	0.0e+00
WP_000138475.1|1255041_1255962_+	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_072460574.1|1256042_1256660_+	MBL fold metallo-hydrolase	NA	A0A1W6JPL3	Staphylococcus_phage	100.0	1.2e-86
WP_000934770.1|1256660_1257131_+	single-stranded DNA-binding protein	NA	A0A0E3T9H6	Staphylococcus_phage	99.4	4.8e-80
WP_107303195.1|1257160_1258045_+	DnaD domain protein	NA	S4V6D4	Staphylococcus_phage	96.3	1.6e-137
WP_000338528.1|1258051_1258270_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000401964.1|1258278_1258683_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
WP_000101270.1|1258695_1259064_+	hypothetical protein	NA	A0A0E3XD52	Staphylococcus_phage	100.0	6.7e-53
WP_000131381.1|1259067_1259310_+	hypothetical protein	NA	A0A1P8L6E3	Staphylococcus_phage	100.0	3.0e-41
WP_107303196.1|1259324_1259579_+	DUF1024 family protein	NA	B5WZN0	Staphylococcus_phage	97.6	6.5e-39
WP_000714407.1|1259565_1259736_+	hypothetical protein	NA	A0A1W6JQ22	Staphylococcus_phage	100.0	5.7e-23
WP_031881549.1|1259728_1260265_+	dUTP diphosphatase	NA	A0A2I6PEN6	Staphylococcus_phage	99.4	4.6e-95
WP_000195794.1|1260301_1260508_+	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
WP_000141180.1|1260504_1260708_+	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_107303198.1|1260700_1260937_+	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	98.7	1.1e-35
WP_001596346.1|1260926_1261316_+	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	100.0	3.6e-65
WP_000595265.1|1261312_1261462_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_001005262.1|1261620_1262271_+	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
WP_001794311.1|1262270_1262471_+	DUF1514 family protein	NA	D2JLD9	Staphylococcus_phage	100.0	1.4e-28
WP_000590122.1|1262498_1262915_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988330.1|1263146_1263446_+	HNH endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	4.6e-52
WP_000402904.1|1263576_1263921_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000625088.1|1263917_1265579_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000025274.1|1265594_1266782_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|1266765_1267503_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000154558.1|1267526_1268672_+|capsid	phage major capsid protein	capsid	C8CH21	Staphylococcus_phage	99.7	2.8e-214
WP_000238240.1|1268691_1268976_+	hypothetical protein	NA	A0A1W6JPL8	Staphylococcus_phage	100.0	2.3e-45
WP_000150936.1|1268965_1269250_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|1269233_1269596_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
1269334:1269351	attR	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
WP_000114341.1|1269592_1269997_+	HK97 gp10 family phage protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
WP_000565498.1|1269993_1270401_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268736.1|1270401_1271046_+|tail	phage tail protein	tail	Q6R871	Staphylococcus_virus	100.0	6.5e-120
WP_071621395.1|1271087_1271312_+	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_001096353.1|1271361_1271712_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	99.1	3.0e-58
WP_001549167.1|1271762_1271900_+	hypothetical protein	NA	A0A2I6PDX7	Staphylococcus_phage	100.0	3.4e-18
WP_107303199.1|1271956_1276489_+|tail	phage tail tape measure protein	tail	W5R8I2	Staphylococcus_phage	92.8	0.0e+00
WP_000567408.1|1276485_1277970_+|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_000582186.1|1277985_1281771_+	hypothetical protein	NA	C8CH32	Staphylococcus_phage	99.7	0.0e+00
WP_001153681.1|1281760_1281913_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|1281959_1282247_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|1282304_1282601_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|1282750_1282927_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_031790389.1|1282979_1283087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|1283138_1283393_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|1283404_1284160_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000920041.1|1284350_1284842_+	staphylokinase	NA	A7TWR8	Staphylococcus_phage	100.0	8.0e-86
WP_000702263.1|1285452_1285803_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|1285855_1286116_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|1286426_1286606_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_000669725.1|1287563_1289633_+	extracellular adherence protein Eap/Map	NA	NA	NA	NA	NA
WP_001068535.1|1289903_1291190_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000990056.1|1291389_1291488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681966.1|1291729_1291906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000691584.1|1292163_1292544_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000991294.1|1292540_1293437_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.7	6.5e-17
WP_000645735.1|1293437_1294118_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|1294114_1294987_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_001221650.1|1294986_1295727_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000182842.1|1295790_1296354_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000966291.1|1296474_1296999_+	membrane protein	NA	NA	NA	NA	NA
WP_001033968.1|1297058_1297616_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000713062.1|1297612_1298455_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001188070.1|1298511_1299552_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000267034.1|1300002_1300176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000205106.1|1300232_1300634_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000181321.1|1300904_1301933_+	lactonase family protein	NA	NA	NA	NA	NA
WP_001021224.1|1302052_1303432_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_001826057.1|1303483_1303657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140871.1|1303849_1304779_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_000149686.1|1304831_1305392_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275718.1|1305763_1306861_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000323172.1|1307065_1308628_+	SLC13 family permease	NA	NA	NA	NA	NA
WP_001802312.1|1308638_1308746_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001177819.1|1308817_1309612_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_000897642.1|1309631_1310708_-	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_000284428.1|1310891_1312361_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.9	1.7e-107
WP_000040870.1|1312353_1313175_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	53.1	6.1e-70
WP_000011542.1|1313444_1314047_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000669861.1|1314027_1314201_+	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000434536.1|1314493_1314817_-	staphostatin A	NA	NA	NA	NA	NA
WP_000827738.1|1314847_1316014_-|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
>prophage 3
NZ_CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	1419753	1467599	2882275	protease,transposase,tRNA	Staphylococcus_phage(91.89%)	47	NA	NA
WP_000196442.1|1419753_1420035_+|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	63.4	3.2e-23
WP_000070813.1|1420483_1420867_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1420877_1421054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000864133.1|1421424_1421982_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	98.1	1.1e-78
WP_000414230.1|1422179_1422752_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	3.5e-24
WP_000627549.1|1422849_1423194_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	96.5	5.1e-55
WP_000669036.1|1423234_1423861_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	9.9e-81
WP_000070644.1|1423936_1424932_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.8	1.3e-69
WP_001825423.1|1425012_1425675_-	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	87.7	2.8e-49
WP_016187363.1|1425977_1426433_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	8.3e-77
WP_000348381.1|1426591_1428070_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	95.5	6.7e-277
WP_000778553.1|1428074_1429076_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	86.5	3.3e-163
WP_000718107.1|1429072_1429330_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672013.1|1429395_1429869_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_016187361.1|1429873_1430620_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	7.8e-141
WP_000109913.1|1430916_1432509_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.6	0.0e+00
WP_000933822.1|1432880_1434074_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366160.1|1434198_1435107_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.3	1.3e-137
WP_000453302.1|1435318_1436152_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.9	1.7e-157
WP_000623484.1|1436401_1436755_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	82.1	2.3e-18
WP_001200546.1|1436751_1437117_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.9e-58
WP_000091443.1|1437371_1437674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|1437932_1438646_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000492903.1|1439208_1439829_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001168915.1|1439995_1440631_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001030474.1|1440928_1441372_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.4e-49
WP_001153741.1|1441358_1441802_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671058.1|1441914_1442385_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	84.6	5.0e-69
WP_000384171.1|1442583_1442808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032832.1|1443083_1443938_+	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000989103.1|1444024_1445317_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.7	7.5e-216
WP_000221190.1|1445316_1445631_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_074371033.1|1446273_1447776_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_171969544.1|1448256_1449300_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	1.6e-195
WP_000493892.1|1449306_1449939_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_001159034.1|1449949_1451131_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.9e-226
WP_001008555.1|1451143_1451602_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	4.1e-68
WP_001196354.1|1451729_1452731_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_014937042.1|1452842_1452962_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|1452964_1453792_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|1454364_1454766_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764426.1|1454884_1455448_-	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	7.3e-99
WP_000526541.1|1455444_1456398_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_001025064.1|1456507_1457689_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_001807819.1|1457976_1460394_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
WP_000836471.1|1460415_1460727_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	95.1	1.3e-49
WP_074371032.1|1461050_1467599_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	95.1	5.7e-296
>prophage 4
NZ_CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	1603845	1612888	2882275	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005766.1|1603845_1604850_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019177.1|1604851_1605877_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|1605899_1607039_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|1607057_1607318_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749801.1|1607592_1609872_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_074371030.1|1610074_1612348_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.1e-64
WP_000364542.1|1612369_1612888_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 5
NZ_CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	1682254	1690566	2882275	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217255.1|1682254_1684054_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
WP_001283055.1|1684277_1685384_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624563.1|1685514_1686192_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683941.1|1686194_1687295_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_001062170.1|1687408_1688755_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	3.4e-54
WP_000924214.1|1688764_1689655_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|1689780_1690566_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 6
NZ_CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	1964314	1969502	2882275		Staphylococcus_phage(66.67%)	8	NA	NA
WP_001215406.1|1964314_1964488_+	hypothetical protein	NA	A0A059NT83	Lactococcus_phage	51.9	3.6e-09
WP_000974166.1|1964551_1965136_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	42.6	4.4e-30
WP_000477489.1|1965567_1965984_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1966494_1966680_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_001788716.1|1967072_1967183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001002341.1|1967883_1968090_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	55.2	5.5e-12
WP_074347689.1|1968390_1968618_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.1	1.9e-18
WP_001807853.1|1969304_1969502_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
>prophage 7
NZ_CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	2235461	2243934	2882275		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238668.1|2235461_2236028_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	2.7e-29
WP_000030815.1|2236030_2237059_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.9e-61
WP_000483707.1|2237051_2238536_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
WP_000032750.1|2238514_2240704_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	1.3e-140
WP_000666799.1|2240696_2241368_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848351.1|2241369_2241633_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174055.1|2241632_2242337_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	2.1e-47
WP_001010409.1|2242340_2243465_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_001807816.1|2243451_2243934_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 8
NZ_CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	2263717	2288185	2882275	protease,holin,bacteriocin	Planktothrix_phage(50.0%)	27	NA	NA
WP_001088778.1|2263717_2264899_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284455.1|2264936_2265266_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184947.1|2265503_2266325_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150215.1|2266317_2267121_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526673.1|2267107_2268781_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000190615.1|2268767_2270129_-	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000070966.1|2270310_2271249_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620945.1|2271299_2271851_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000867362.1|2272015_2272231_+	TM2 domain-containing protein	NA	NA	NA	NA	NA
WP_001794249.1|2272294_2272426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081332.1|2272474_2273434_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|2273924_2274281_+	DoxX family protein	NA	NA	NA	NA	NA
WP_157958947.1|2274369_2274558_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_001796515.1|2274647_2274938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571192.1|2275025_2275667_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	1.0e-19
WP_000668623.1|2275663_2275984_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000870811.1|2275986_2277951_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000790905.1|2277994_2278279_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_099119695.1|2278913_2278991_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_001033867.1|2279290_2279893_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|2279907_2280084_-	YkvS family protein	NA	NA	NA	NA	NA
WP_000668814.1|2280282_2281269_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876826.1|2281349_2281568_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000287265.1|2281777_2282347_+	competence protein ComK	NA	NA	NA	NA	NA
WP_000414168.1|2282835_2284347_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021872.1|2284485_2285844_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_014937014.1|2285860_2288185_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
>prophage 9
NZ_CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	2342654	2365879	2882275	integrase	Streptococcus_phage(94.74%)	23	2338363:2338380	2377406:2377423
2338363:2338380	attL	GCGGGGCCCCAACACAGA	NA	NA	NA	NA
WP_000420682.1|2342654_2342969_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_000985015.1|2342984_2343371_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000813488.1|2343399_2344785_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000879507.1|2344787_2344940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000398284.1|2344962_2346168_+	replication initiation factor domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_001009056.1|2346210_2346432_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000342539.1|2346548_2347046_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_000506270.1|2347020_2347527_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_074371015.1|2347510_2349958_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	99.9	0.0e+00
WP_000804748.1|2349960_2352138_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000769868.1|2352134_2353136_+	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_001224318.1|2353132_2354065_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
WP_001814923.1|2354309_2354426_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000691736.1|2354441_2356361_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
WP_000336323.1|2356479_2356647_+	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_001227347.1|2356706_2357060_-	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000804885.1|2357564_2357987_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_000857133.1|2357983_2358214_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000814511.1|2358674_2358878_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_074371014.1|2358959_2360177_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	99.8	1.1e-232
WP_000902814.1|2360441_2360831_-	YisL family protein	NA	NA	NA	NA	NA
WP_000670757.1|2361157_2362060_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_000154905.1|2362225_2365879_-	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.7	7.0e-25
2377406:2377423	attR	TCTGTGTTGGGGCCCCGC	NA	NA	NA	NA
>prophage 10
NZ_CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	2415075	2461222	2882275	integrase,tail,head,holin,portal,plate,terminase	Staphylococcus_phage(69.57%)	71	2408350:2408365	2466347:2466362
2408350:2408365	attL	CTTTTGGTAATTCTTT	NA	NA	NA	NA
WP_001251277.1|2415075_2415459_-	hypothetical protein	NA	A0A0H4J3A8	Staphylococcus_phage	100.0	4.7e-65
WP_000344118.1|2415445_2415757_-	DUF3467 domain-containing protein	NA	Q4ZB87	Staphylococcus_virus	100.0	1.8e-51
WP_001286805.1|2416102_2416288_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
WP_000139423.1|2416289_2416400_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001788502.1|2416470_2416623_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_001148132.1|2416865_2418311_-	SH3 domain-containing protein	NA	Q08JW9	Staphylococcus_phage	98.8	1.7e-293
WP_000354132.1|2418291_2418729_-|holin	phage holin	holin	A0A2H4PQP0	Staphylococcus_phage	100.0	4.1e-73
WP_031927514.1|2418785_2419181_-	hypothetical protein	NA	A9CRD5	Staphylococcus_phage	98.5	2.3e-67
WP_031927513.1|2419185_2420424_-|plate	BppU family phage baseplate upper protein	plate	A0A0F6N3G7	Staphylococcus_phage	99.3	3.8e-209
WP_031927512.1|2420436_2422311_-	glucosaminidase domain-containing protein	NA	Q9FZY4	Staphylococcus_virus	98.4	0.0e+00
WP_000466777.1|2422447_2422747_-	DUF2951 domain-containing protein	NA	A0A0F6N3M6	Staphylococcus_phage	100.0	9.9e-47
WP_000782200.1|2422787_2422961_-	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000705917.1|2422963_2423341_-	DUF2977 domain-containing protein	NA	E0Y3M4	Staphylococcus_virus	100.0	2.6e-60
WP_015978293.1|2423340_2425164_-|plate	BppU family phage baseplate upper protein	plate	Q4ZBH7	Staphylococcus_virus	100.0	0.0e+00
WP_031927511.1|2425163_2427062_-	hypothetical protein	NA	Q4ZBH8	Staphylococcus_virus	99.8	0.0e+00
WP_001144700.1|2427074_2428961_-|tail	phage tail protein	tail	A7YGW3	Staphylococcus_virus	100.0	0.0e+00
WP_015978299.1|2428971_2429907_-|tail	phage tail family protein	tail	Q4ZBI0	Staphylococcus_virus	100.0	8.2e-180
WP_031927510.1|2429921_2432891_-|terminase	terminase	terminase	Q4ZBI1	Staphylococcus_virus	99.8	1.0e-263
WP_050482623.1|2432893_2433235_-	hypothetical protein	NA	A0A2H4PQL5	Staphylococcus_phage	76.1	9.3e-41
WP_000141084.1|2433255_2433750_-	hypothetical protein	NA	A0A0H4IPX9	Staphylococcus_phage	100.0	2.5e-87
WP_000046067.1|2433811_2434372_-	hypothetical protein	NA	A0A0H4ITY2	Staphylococcus_phage	100.0	5.9e-101
WP_015978307.1|2434358_2434796_-	DUF3168 domain-containing protein	NA	Q4ZBI5	Staphylococcus_virus	100.0	2.1e-77
WP_001151332.1|2434808_2435222_-	HK97 gp10 family phage protein	NA	A0A0E3XCY8	Staphylococcus_phage	100.0	1.5e-77
WP_031927508.1|2435208_2435544_-|head	phage head closure protein	head	A0A0H4ISR6	Staphylococcus_phage	98.2	8.8e-60
WP_000338936.1|2435536_2435851_-|head,tail	phage head-tail connector protein	head,tail	A0A0E3T8M5	Staphylococcus_phage	100.0	8.8e-54
WP_000278799.1|2435850_2436177_-	Rho termination factor N-terminal domain-containing protein	NA	A0A0E3TAL3	Staphylococcus_phage	100.0	4.3e-51
WP_031927507.1|2436193_2437018_-|head	head protein	head	A0A0E3T9M6	Staphylococcus_phage	100.0	5.6e-148
WP_031927506.1|2437038_2437635_-	phage scaffolding protein	NA	C7F7L8	Staphylococcus_phage	98.0	3.1e-76
WP_050482622.1|2437732_2438713_-|head	phage head morphogenesis protein	head	A0A0E3XC69	Staphylococcus_phage	99.7	3.5e-181
WP_050482621.1|2438651_2440130_-|portal	phage portal protein	portal	A0A0E3T8M2	Staphylococcus_phage	99.6	5.1e-285
WP_031927503.1|2440083_2441292_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0H4ITX6	Staphylococcus_phage	99.5	4.0e-235
WP_031927502.1|2441284_2441779_-|terminase	terminase	terminase	A0A0H4J343	Staphylococcus_phage	99.4	3.2e-82
WP_000286968.1|2442130_2442532_-	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_031902440.1|2442532_2442706_-	transcriptional regulator	NA	Q4ZA36	Staphylococcus_virus	94.7	5.4e-21
WP_001596346.1|2442702_2443092_-	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	100.0	3.6e-65
WP_000608278.1|2443081_2443318_-	hypothetical protein	NA	Q4ZDP0	Staphylococcus_virus	100.0	2.8e-36
WP_001072794.1|2443310_2443514_-	hypothetical protein	NA	B2ZYX5	Staphylococcus_phage	98.5	8.8e-31
WP_031785913.1|2443510_2443717_-	DUF1381 domain-containing protein	NA	S4V684	Staphylococcus_phage	97.1	1.1e-28
WP_001282070.1|2443713_2443959_-	hypothetical protein	NA	A0A0H4ITX2	Staphylococcus_phage	100.0	2.0e-37
WP_031927501.1|2443995_2444532_-	dUTP diphosphatase	NA	A0A0K1LKF0	Staphylococcus_phage	97.8	5.7e-93
WP_001065056.1|2444524_2444773_-	DUF1024 family protein	NA	Q4ZCN8	Staphylococcus_virus	100.0	2.4e-38
WP_031927500.1|2444765_2445041_-	hypothetical protein	NA	Q4ZBD3	Staphylococcus_virus	94.5	3.0e-42
WP_031927499.1|2445040_2445442_-	hypothetical protein	NA	A0A0H4IPW3	Staphylococcus_phage	79.1	4.3e-53
WP_031927498.1|2445456_2445705_-	phage protein	NA	S4V683	Staphylococcus_phage	97.6	3.6e-42
WP_031927497.1|2445705_2446323_-	phage protein	NA	A0A0H3U4U9	Staphylococcus_phage	96.1	7.5e-81
WP_031927496.1|2446323_2446509_-	DUF3113 family protein	NA	A0A0H3U473	Staphylococcus_phage	96.7	3.5e-26
WP_000401951.1|2446508_2446916_-	RusA family crossover junction endodeoxyribonuclease	NA	A9CR74	Staphylococcus_phage	98.5	2.5e-72
WP_001633781.1|2446925_2447147_-	DUF3269 family protein	NA	A0A0H3U2V4	Staphylococcus_phage	98.6	1.9e-34
WP_031927495.1|2447160_2447319_-	hypothetical protein	NA	A0A2I6PDX0	Staphylococcus_phage	96.2	1.3e-21
WP_031927494.1|2447312_2448086_-	ATP-binding protein	NA	A0A2I6PDA0	Staphylococcus_phage	98.8	1.5e-142
WP_074371009.1|2448095_2448911_-	phage replisome organizer N-terminal domain-containing protein	NA	Q4ZAS2	Staphylococcus_virus	99.3	1.3e-117
WP_000240901.1|2448882_2449662_-	AP2 domain-containing protein	NA	A0A2H4J5K3	uncultured_Caudovirales_phage	46.1	7.3e-49
WP_031927703.1|2449661_2450327_-	phi PV83 orf 19-like protein	NA	Q8SDW3	Staphylococcus_phage	99.5	1.4e-125
WP_000704713.1|2450339_2450894_-	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	100.0	1.0e-100
WP_001288247.1|2450924_2451698_-	AAA family ATPase	NA	A0EWP9	Staphylococcus_virus	100.0	1.6e-141
WP_000002516.1|2451697_2452177_-	siphovirus Gp157 family protein	NA	A0A0H4J328	Staphylococcus_phage	100.0	1.1e-82
WP_000291067.1|2452191_2452452_-	DUF1108 family protein	NA	A1KX65	Staphylococcus_virus	100.0	8.9e-44
WP_000048124.1|2452544_2452706_-	DUF1270 family protein	NA	C7F7L3	Staphylococcus_phage	100.0	1.9e-20
WP_000594792.1|2452698_2452920_-	hypothetical protein	NA	A0A0H4ISQ0	Staphylococcus_phage	100.0	1.5e-31
WP_000394020.1|2453117_2453321_-	hypothetical protein	NA	A0A0E3XBM9	Staphylococcus_phage	100.0	4.7e-32
WP_015978274.1|2453336_2454089_-	phage antirepressor KilAC domain-containing protein	NA	Q4ZBN2	Staphylococcus_phage	100.0	1.3e-138
WP_021285963.1|2454153_2454390_+	hypothetical protein	NA	Q4ZBN3	Staphylococcus_phage	97.4	8.7e-38
WP_162852837.1|2454382_2454544_-	hypothetical protein	NA	Q4ZB04	Staphylococcus_virus	98.1	9.5e-20
WP_074371007.1|2454603_2454831_-	BetR domain protein	NA	B5WZL3	Staphylococcus_phage	93.3	2.6e-31
WP_031927531.1|2455001_2455613_+	helix-turn-helix domain-containing protein	NA	B5WZL2	Staphylococcus_phage	90.1	3.8e-101
WP_000392183.1|2455648_2456581_+	hypothetical protein	NA	A0EX19	Staphylococcus_virus	100.0	6.7e-174
WP_000337827.1|2456560_2456740_-	hypothetical protein	NA	Q4ZBP0	Staphylococcus_phage	100.0	3.7e-25
WP_031927532.1|2456852_2457902_+|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	99.4	1.1e-201
WP_001074405.1|2457969_2459367_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001010508.1|2459517_2459982_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001825559.1|2459971_2461222_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	8.3e-111
2466347:2466362	attR	CTTTTGGTAATTCTTT	NA	NA	NA	NA
>prophage 11
NZ_CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	2548696	2563012	2882275		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000616865.1|2548696_2549458_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
WP_001245567.1|2549454_2550411_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.6e-05
WP_000876311.1|2550397_2551369_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_000562498.1|2551738_2552710_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|2552829_2554935_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|2554897_2555296_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068490.1|2556097_2556964_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930016.1|2556983_2557484_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_000193750.1|2557823_2559329_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_014936998.1|2559400_2559508_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429003.1|2559598_2560516_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.8e-07
WP_000197271.1|2561252_2561795_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663034.1|2561953_2563012_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	1.5e-20
>prophage 12
NZ_CP028163	Staphylococcus aureus strain CFSAN064038 chromosome, complete genome	2882275	2574982	2582802	2882275		Pandoravirus(16.67%)	10	NA	NA
WP_001217786.1|2574982_2576134_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
WP_000604516.1|2576117_2576711_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	3.1e-39
WP_000446724.1|2577061_2577730_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|2577731_2578151_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062968.1|2578154_2578868_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637685.1|2578966_2579551_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093557.1|2579831_2580272_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037805.1|2580612_2581086_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|2581060_2581747_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|2581746_2582802_+	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
