assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003028315.1_ASM302831v1	NZ_CP028150	Neisseria mucosa strain ATCC 19696 chromosome, complete genome	1	691465-703053	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,c2c9_V-U4,csa3,DinG	Type I-C,Type I-U, Type I-U?	CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC,CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC,CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC	32,32,32	0	0	NA	NA	NA:NA:NA	174,174,110	174	TypeI-C,TypeI-U,TypeI-U?	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,c2c9_V-U4,csa3,DinG	NA,NA|180aa|down_4|NZ_CP028150.1_707847_708387_-	NA|83aa|up_9|NZ_CP028150.1_679901_680150_-	pfam05532, CsbD, CsbD-like	NA|510aa|up_8|NZ_CP028150.1_680278_681808_-	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|70aa|up_7|NZ_CP028150.1_681884_682094_-	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	cas3|829aa|up_6|NZ_CP028150.1_682526_685013_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|241aa|up_5|NZ_CP028150.1_685020_685743_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|681aa|up_4|NZ_CP028150.1_685739_687782_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|280aa|up_3|NZ_CP028150.1_687803_688643_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|217aa|up_2|NZ_CP028150.1_688657_689308_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|338aa|up_1|NZ_CP028150.1_689893_690907_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NZ_CP028150.1_690981_691275_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|264aa|down_0|NZ_CP028150.1_703074_703867_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|73aa|down_1|NZ_CP028150.1_704870_705089_+	COG2841, COG2841, Uncharacterized protein conserved in bacteria [Function unknown]	NA|508aa|down_2|NZ_CP028150.1_705155_706679_-	cd09113, PLDc_ymdC_like_2, Putative catalytic domain, repeat 2, of Escherichia coli uncharacterized protein ymdC and similar proteins	NA|335aa|down_3|NZ_CP028150.1_706825_707830_-	PRK09358, PRK09358, adenosine deaminase; Provisional	NA|180aa|down_4|NZ_CP028150.1_707847_708387_-	NA	NA|337aa|down_5|NZ_CP028150.1_708464_709475_-	PRK12284, PRK12284, tryptophanyl-tRNA synthetase; Reviewed	NA|858aa|down_6|NZ_CP028150.1_709733_712307_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|303aa|down_7|NZ_CP028150.1_712420_713329_-	pfam04261, Dyp_perox, Dyp-type peroxidase family	NA|362aa|down_8|NZ_CP028150.1_713461_714547_+	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|199aa|down_9|NZ_CP028150.1_714752_715349_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]
GCF_003028315.1_ASM302831v1	NZ_CP028150	Neisseria mucosa strain ATCC 19696 chromosome, complete genome	2	703933-704552	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas5,cas8c,cas7,cas4,cas1,cas2	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,c2c9_V-U4,csa3,DinG	Type I-C,Type I-U, Type I-U?	CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA,CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC,GGCGGCTGTGTGTTGAAAC	33,32,19	0	0	NA	NA	NA:NA:NA	5,9,8	9	TypeI-C,TypeI-U,TypeI-U?	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,c2c9_V-U4,csa3,DinG	NA,NA|180aa|down_3|NZ_CP028150.1_707847_708387_-	NA|510aa|up_9|NZ_CP028150.1_680278_681808_-	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|70aa|up_8|NZ_CP028150.1_681884_682094_-	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	cas3|829aa|up_7|NZ_CP028150.1_682526_685013_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|241aa|up_6|NZ_CP028150.1_685020_685743_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|681aa|up_5|NZ_CP028150.1_685739_687782_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|280aa|up_4|NZ_CP028150.1_687803_688643_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|217aa|up_3|NZ_CP028150.1_688657_689308_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|338aa|up_2|NZ_CP028150.1_689893_690907_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_1|NZ_CP028150.1_690981_691275_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|264aa|up_0|NZ_CP028150.1_703074_703867_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|73aa|down_0|NZ_CP028150.1_704870_705089_+	COG2841, COG2841, Uncharacterized protein conserved in bacteria [Function unknown]	NA|508aa|down_1|NZ_CP028150.1_705155_706679_-	cd09113, PLDc_ymdC_like_2, Putative catalytic domain, repeat 2, of Escherichia coli uncharacterized protein ymdC and similar proteins	NA|335aa|down_2|NZ_CP028150.1_706825_707830_-	PRK09358, PRK09358, adenosine deaminase; Provisional	NA|180aa|down_3|NZ_CP028150.1_707847_708387_-	NA	NA|337aa|down_4|NZ_CP028150.1_708464_709475_-	PRK12284, PRK12284, tryptophanyl-tRNA synthetase; Reviewed	NA|858aa|down_5|NZ_CP028150.1_709733_712307_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|303aa|down_6|NZ_CP028150.1_712420_713329_-	pfam04261, Dyp_perox, Dyp-type peroxidase family	NA|362aa|down_7|NZ_CP028150.1_713461_714547_+	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|199aa|down_8|NZ_CP028150.1_714752_715349_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|285aa|down_9|NZ_CP028150.1_715813_716668_-	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed
GCF_003028315.1_ASM302831v1	NZ_CP028150	Neisseria mucosa strain ATCC 19696 chromosome, complete genome	3	1642477-1642586	3	CRISPRCasFinder	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,c2c9_V-U4,csa3,DinG	Orphan	ACGGGGTTTAAGTTTTCAGACGACCT	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,c2c9_V-U4,csa3,DinG	NA,NA|95aa|down_5|NZ_CP028150.1_1649347_1649632_+,NA|146aa|down_7|NZ_CP028150.1_1651438_1651876_-,NA|144aa|down_8|NZ_CP028150.1_1652325_1652757_-	NA|270aa|up_9|NZ_CP028150.1_1632117_1632927_-	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed	NA|473aa|up_8|NZ_CP028150.1_1633171_1634590_+	PRK09469, glnA, glutamate--ammonia ligase	NA|355aa|up_7|NZ_CP028150.1_1634846_1635911_+	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase	NA|724aa|up_6|NZ_CP028150.1_1636185_1638357_-	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism]	NA|213aa|up_5|NZ_CP028150.1_1638708_1639347_-	COG0602, NrdG, Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]	NA|124aa|up_4|NZ_CP028150.1_1639343_1639715_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|141aa|up_3|NZ_CP028150.1_1639983_1640406_-	pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase	NA|172aa|up_2|NZ_CP028150.1_1640416_1640932_-	pfam07566, DUF1543, Domain of Unknown Function (DUF1543)	NA|220aa|up_1|NZ_CP028150.1_1640964_1641624_-	TIGR00364, 7-cyano-7-deazaguanine_synthase, queuosine biosynthesis protein QueC	NA|213aa|up_0|NZ_CP028150.1_1641786_1642425_-	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	NA|612aa|down_0|NZ_CP028150.1_1642884_1644720_-	PRK09054, PRK09054, phosphogluconate dehydratase; Validated	NA|482aa|down_1|NZ_CP028150.1_1645183_1646629_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|232aa|down_2|NZ_CP028150.1_1646845_1647541_+	TIGR01198, 6-phosphogluconolactonase_6PGL	NA|334aa|down_3|NZ_CP028150.1_1647521_1648523_+	PRK00292, glk, glucokinase; Provisional	NA|283aa|down_4|NZ_CP028150.1_1648572_1649421_+	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional	NA|95aa|down_5|NZ_CP028150.1_1649347_1649632_+	NA	NA|548aa|down_6|NZ_CP028150.1_1649743_1651387_+	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed	NA|146aa|down_7|NZ_CP028150.1_1651438_1651876_-	NA	NA|144aa|down_8|NZ_CP028150.1_1652325_1652757_-	NA	NA|198aa|down_9|NZ_CP028150.1_1653303_1653897_-	COG3663, Mug, G:T/U mismatch-specific DNA glycosylase [DNA replication, recombination, and repair]
GCF_003028315.1_ASM302831v1	NZ_CP028150	Neisseria mucosa strain ATCC 19696 chromosome, complete genome	4	2002206-2002313	4	CRISPRCasFinder	no		DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,c2c9_V-U4,csa3,DinG	Orphan	CGTAAAGATATTGATGCCAATAAA	24	1	2	2002230-2002289|2002230-2002289	NZ_CP028150.1_2002791-2002850|NZ_CP028150.1_2000910-2000969	NA	1	1	Orphan	DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,c2c9_V-U4,csa3,DinG	NA|147aa|up_8|NZ_CP028150.1_1986596_1987037_+,NA|136aa|up_2|NZ_CP028150.1_1996339_1996747_-,NA|51aa|down_4|NZ_CP028150.1_2010449_2010602_+,NA|79aa|down_7|NZ_CP028150.1_2017363_2017600_+	NA|283aa|up_9|NZ_CP028150.1_1985328_1986176_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|147aa|up_8|NZ_CP028150.1_1986596_1987037_+	NA	NA|248aa|up_7|NZ_CP028150.1_1987256_1988000_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|311aa|up_6|NZ_CP028150.1_1988001_1988934_-	pfam01032, FecCD, FecCD transport family	NA|263aa|up_5|NZ_CP028150.1_1989161_1989950_-	COG4558, ChuT, ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|931aa|up_4|NZ_CP028150.1_1991777_1994570_+	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|443aa|up_3|NZ_CP028150.1_1994807_1996136_-	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|136aa|up_2|NZ_CP028150.1_1996339_1996747_-	NA	NA|428aa|up_1|NZ_CP028150.1_1996959_1998243_+	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase	NA|311aa|up_0|NZ_CP028150.1_1998499_1999432_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|336aa|down_0|NZ_CP028150.1_2004172_2005180_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|269aa|down_1|NZ_CP028150.1_2005380_2006187_-	pfam00665, rve, Integrase core domain	NA|438aa|down_2|NZ_CP028150.1_2007056_2008370_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|336aa|down_3|NZ_CP028150.1_2009489_2010497_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|51aa|down_4|NZ_CP028150.1_2010449_2010602_+	NA	NA|155aa|down_5|NZ_CP028150.1_2010680_2011145_-	COG4968, PilE, Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion]	NA|97aa|down_6|NZ_CP028150.1_2011318_2011609_-	TIGR01259, ComE_operon_protein_1, comEA protein	NA|79aa|down_7|NZ_CP028150.1_2017363_2017600_+	NA	NA|269aa|down_8|NZ_CP028150.1_2017735_2018542_-	COG4137, COG4137, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|457aa|down_9|NZ_CP028150.1_2018658_2020029_+	PRK10867, PRK10867, signal recognition particle protein; Provisional
