assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003020685.1_ASM302068v1	NZ_CP027497	Enterococcus faecium strain AUSMDU00004167 chromosome, complete genome	1	2435649-2435758	1	CRISPRCasFinder	no		cas3,DEDDh,cas14j,RT,DinG,cas2,csa3	Orphan	CTTTGCTCAACCAGTATTATTCATCA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas14j,RT,DinG,cas2,csa3	NA,NA	NA|720aa|up_9|NZ_CP027497.1_2423189_2425349_+	PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|322aa|up_8|NZ_CP027497.1_2425398_2426364_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|380aa|up_7|NZ_CP027497.1_2426452_2427592_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|238aa|up_6|NZ_CP027497.1_2427899_2428613_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|234aa|up_5|NZ_CP027497.1_2428866_2429568_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|511aa|up_4|NZ_CP027497.1_2429801_2431334_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|303aa|up_3|NZ_CP027497.1_2431723_2432632_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|230aa|up_2|NZ_CP027497.1_2433856_2434546_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|123aa|up_1|NZ_CP027497.1_2434651_2435020_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|168aa|up_0|NZ_CP027497.1_2435072_2435576_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|230aa|down_0|NZ_CP027497.1_2435985_2436675_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|141aa|down_1|NZ_CP027497.1_2436778_2437201_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|223aa|down_2|NZ_CP027497.1_2437543_2438212_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|291aa|down_3|NZ_CP027497.1_2438224_2439097_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|340aa|down_4|NZ_CP027497.1_2439187_2440207_-	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|296aa|down_5|NZ_CP027497.1_2440379_2441267_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|182aa|down_6|NZ_CP027497.1_2441343_2441889_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|57aa|down_7|NZ_CP027497.1_2441989_2442160_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|51aa|down_8|NZ_CP027497.1_2442183_2442336_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|215aa|down_9|NZ_CP027497.1_2442497_2443142_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
GCF_003020685.1_ASM302068v1	NZ_CP027498	Enterococcus faecium strain AUSMDU00004167 plasmid unnamed1, complete sequence	1	430-557	1	CRISPRCasFinder	no	cas14j	cas14j	Unclear	TCAGAGGGTATGAAAATCATACC	23	0	0	NA	NA	NA	2	2	TypeV	cas3,DEDDh,cas14j,RT,DinG,cas2,csa3	NA,NA|111aa|down_0|NZ_CP027498.1_1864_2197_+,NA|791aa|down_3|NZ_CP027498.1_5053_7426_+,NA|68aa|down_9|NZ_CP027498.1_13536_13740_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|111aa|down_0|NZ_CP027498.1_1864_2197_+	NA	NA|114aa|down_1|NZ_CP027498.1_2815_3157_+	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|417aa|down_2|NZ_CP027498.1_3393_4644_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|791aa|down_3|NZ_CP027498.1_5053_7426_+	NA	NA|487aa|down_4|NZ_CP027498.1_7486_8947_+	pfam13155, Toprim_2, Toprim-like	NA|735aa|down_5|NZ_CP027498.1_8957_11162_+	PRK07726, PRK07726, DNA topoisomerase 3	NA|198aa|down_6|NZ_CP027498.1_11402_11996_+	pfam13338, AbiEi_4, Transcriptional regulator, AbiEi antitoxin	NA|300aa|down_7|NZ_CP027498.1_12008_12908_+	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system	NA|162aa|down_8|NZ_CP027498.1_12910_13396_+	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional	NA|68aa|down_9|NZ_CP027498.1_13536_13740_-	NA
GCF_003020685.1_ASM302068v1	NZ_CP027498	Enterococcus faecium strain AUSMDU00004167 plasmid unnamed1, complete sequence	2	150509-150619	2	CRISPRCasFinder	no		cas14j	Orphan	ACAACTCATCAGTCCTTATTGACAAAGAGCC	31	1	11	150540-150588|150540-150588|150540-150588|150540-150588|150540-150588|150540-150588|150540-150588|150540-150588|150540-150588|150540-150588|150540-150588	NZ_CP027497.1_517580-517532|NZ_CP027497.1_1338716-1338668|NZ_CP027497.1_1465729-1465777|NZ_CP027497.1_1672818-1672866|NZ_CP027497.1_1781695-1781743|NZ_CP027497.1_1840381-1840333|NZ_CP027497.1_1870034-1870082|NZ_CP027497.1_1871553-1871601|NZ_CP027497.1_1894803-1894851|NZ_CP027497.1_1912343-1912391|NZ_CP027497.1_1957966-1958014	NA	1	1	Orphan	cas3,DEDDh,cas14j,RT,DinG,cas2,csa3	NA,NA	NA|554aa|up_9|NZ_CP027498.1_134146_135808_-	pfam07555, NAGidase, beta-N-acetylglucosaminidase	NA|994aa|up_8|NZ_CP027498.1_135804_138786_-	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|638aa|up_7|NZ_CP027498.1_138913_140827_-	cd06565, GH20_GcnA-like, Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins	NA|204aa|up_6|NZ_CP027498.1_140856_141468_-	COG5578, COG5578, Predicted integral membrane protein [Function unknown]	NA|491aa|up_5|NZ_CP027498.1_141518_142991_-	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|304aa|up_4|NZ_CP027498.1_143014_143926_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|313aa|up_3|NZ_CP027498.1_143937_144876_-	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|525aa|up_2|NZ_CP027498.1_145104_146679_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|243aa|up_1|NZ_CP027498.1_146656_147385_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|425aa|up_0|NZ_CP027498.1_147767_149042_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|112aa|down_0|NZ_CP027498.1_150635_150971_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_1|NZ_CP027498.1_150954_151227_-	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|268aa|down_2|NZ_CP027498.1_151677_152481_-	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain	NA|375aa|down_3|NZ_CP027498.1_152458_153583_-	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]	NA|272aa|down_4|NZ_CP027498.1_153598_154414_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|294aa|down_5|NZ_CP027498.1_154403_155285_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|430aa|down_6|NZ_CP027498.1_155360_156650_-	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold	NA|499aa|down_7|NZ_CP027498.1_157998_159495_-	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|400aa|down_8|NZ_CP027498.1_159466_160666_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|459aa|down_9|NZ_CP027498.1_160795_162172_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
