assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003019095.1_ASM301909v1	NZ_CP027461	Escherichia coli strain 95-3322 chromosome, complete genome	1	1053837-1054525	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	DEDDh,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,csa3,PD-DExK	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	1	1	1053925-1053956	NZ_CP027461.1_3166878-3166909	I-F:I-F:I-F	10,11,11	11	TypeI-F	DEDDh,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,csa3,PD-DExK	NA,NA	NA|551aa|up_9|NZ_CP027461.1_1040339_1041992_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_CP027461.1_1042135_1043035_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_CP027461.1_1043435_1044131_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_CP027461.1_1044556_1046215_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NZ_CP027461.1_1046211_1047168_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP027461.1_1047318_1048434_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP027461.1_1048430_1050377_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP027461.1_1050449_1050674_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP027461.1_1050996_1051317_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP027461.1_1051347_1053624_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|down_0|NZ_CP027461.1_1054697_1055681_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|down_1|NZ_CP027461.1_1055677_1058911_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|down_2|NZ_CP027461.1_1059240_1060548_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|308aa|down_3|NZ_CP027461.1_1060544_1061468_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|334aa|down_4|NZ_CP027461.1_1061478_1062480_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_5|NZ_CP027461.1_1062490_1063045_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_6|NZ_CP027461.1_1064086_1064305_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_7|NZ_CP027461.1_1064589_1065294_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_8|NZ_CP027461.1_1065335_1067057_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_9|NZ_CP027461.1_1067057_1068824_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
GCF_003019095.1_ASM301909v1	NZ_CP027461	Escherichia coli strain 95-3322 chromosome, complete genome	2	1063586-1063974	2,2	CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	DEDDh,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,csa3,PD-DExK	Type I-F	GTTCACTGCCGTACAGGCAGCTT,GTTCACTGCCGTACAGGCAGCTTAGAAA	23,28	0	0	NA	NA	I-F:I-F	6,6	6	TypeI-F	DEDDh,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,csa3,PD-DExK	NA,NA	NA|649aa|up_9|NZ_CP027461.1_1048430_1050377_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_8|NZ_CP027461.1_1050449_1050674_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_7|NZ_CP027461.1_1050996_1051317_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_6|NZ_CP027461.1_1051347_1053624_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|up_5|NZ_CP027461.1_1054697_1055681_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|up_4|NZ_CP027461.1_1055677_1058911_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|up_3|NZ_CP027461.1_1059240_1060548_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|308aa|up_2|NZ_CP027461.1_1060544_1061468_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|334aa|up_1|NZ_CP027461.1_1061478_1062480_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|up_0|NZ_CP027461.1_1062490_1063045_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_0|NZ_CP027461.1_1064086_1064305_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP027461.1_1064589_1065294_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP027461.1_1065335_1067057_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP027461.1_1067057_1068824_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP027461.1_1068946_1069912_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP027461.1_1070455_1070950_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1369aa|down_6|NZ_CP027461.1_1071084_1075191_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP027461.1_1075349_1075961_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP027461.1_1075971_1077315_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP027461.1_1077405_1078698_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_003019095.1_ASM301909v1	NZ_CP027461	Escherichia coli strain 95-3322 chromosome, complete genome	3	4490572-4490704	3	CRISPRCasFinder	no		DEDDh,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,csa3,PD-DExK	Orphan	ACGCTGCCGCGTCTTATCGGGCCTACAAAAGTTCTGAACCGT	42	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,csa3,PD-DExK	NA,NA	NA|252aa|up_9|NZ_CP027461.1_4482096_4482852_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|202aa|up_8|NZ_CP027461.1_4482865_4483471_+	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|547aa|up_7|NZ_CP027461.1_4483467_4485108_+	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|90aa|up_6|NZ_CP027461.1_4485186_4485456_+	PRK03554, tatA, Sec-independent protein translocase subunit TatA	NA|172aa|up_5|NZ_CP027461.1_4485459_4485975_+	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB	NA|259aa|up_4|NZ_CP027461.1_4485977_4486754_+	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC	NA|261aa|up_3|NZ_CP027461.1_4486795_4487578_+	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD	NA|163aa|up_2|NZ_CP027461.1_4487574_4488063_-	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH	NA|498aa|up_1|NZ_CP027461.1_4488229_4489723_+	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|234aa|up_0|NZ_CP027461.1_4489768_4490470_+	PRK08051, fre, FMN reductase; Validated	NA|388aa|down_0|NZ_CP027461.1_4490742_4491906_-	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed	NA|730aa|down_1|NZ_CP027461.1_4491915_4494105_-	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|444aa|down_2|NZ_CP027461.1_4494294_4495626_+	PRK13607, PRK13607, proline dipeptidase; Provisional	NA|205aa|down_3|NZ_CP027461.1_4495625_4496240_+	PRK11568, PRK11568, IMPACT family protein	NA|484aa|down_4|NZ_CP027461.1_4496278_4497730_+	PRK10750, PRK10750, Trk system potassium transporter TrkH	NA|182aa|down_5|NZ_CP027461.1_4497741_4498287_+	PRK11104, hemG, menaquinone-dependent protoporphyrinogen IX dehydrogenase	NA|176aa|down_6|NZ_CP027461.1_4503863_4504391_-	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional	NA|195aa|down_7|NZ_CP027461.1_4504372_4504957_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|90aa|down_8|NZ_CP027461.1_4505026_4505296_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|329aa|down_9|NZ_CP027461.1_4505372_4506359_+	PRK11768, PRK11768, serine/threonine protein kinase
GCF_003019095.1_ASM301909v1	NZ_CP027461	Escherichia coli strain 95-3322 chromosome, complete genome	4	5041627-5041766	4	CRISPRCasFinder	no	cas3	DEDDh,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,csa3,PD-DExK	Unclear	TGTGTAGGTCGGATAAGGCGTTCACGTCGCATCCGACAATAACA	44	0	0	NA	NA	NA	1	1	Unclear	DEDDh,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,cas3,csa3,PD-DExK	NA,NA|298aa|down_6|NZ_CP027461.1_5050764_5051658_+	NA|335aa|up_9|NZ_CP027461.1_5030172_5031177_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|315aa|up_8|NZ_CP027461.1_5031187_5032132_-	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|407aa|up_7|NZ_CP027461.1_5032142_5033363_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|151aa|up_6|NZ_CP027461.1_5034040_5034493_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|335aa|up_5|NZ_CP027461.1_5034537_5035542_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP027461.1_5035703_5036120_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP027461.1_5036296_5036800_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|396aa|up_2|NZ_CP027461.1_5036992_5038180_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP027461.1_5038226_5041082_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP027461.1_5041081_5041525_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP027461.1_5041782_5043294_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP027461.1_5043560_5044661_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP027461.1_5044660_5045743_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP027461.1_5045903_5047406_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP027461.1_5047535_5048555_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|415aa|down_5|NZ_CP027461.1_5049021_5050266_+	PRK09692, PRK09692, integrase; Provisional	NA|298aa|down_6|NZ_CP027461.1_5050764_5051658_+	NA	NA|417aa|down_7|NZ_CP027461.1_5051731_5052982_+	COG0343, Tgt, Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]	NA|378aa|down_8|NZ_CP027461.1_5052978_5054112_+	TIGR03187, hypothetical_protein, DGQHR domain	cas3|817aa|down_9|NZ_CP027461.1_5057495_5059946_+	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]
