assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003018915.1_ASM301891v1	NZ_CP027388	Escherichia coli strain 2011C-4251 chromosome, complete genome	1	2814462-2814577	1	CRISPRCasFinder	no		DEDDh,RT,cas3,c2c9_V-U4,DinG,WYL,csa3,PD-DExK,PrimPol,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	AACGCCTGATGCGACGCTGACGCGTCTTATC	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,c2c9_V-U4,DinG,WYL,csa3,PD-DExK,PrimPol,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	NA|393aa|up_9|NZ_CP027388.1_2802477_2803656_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|NZ_CP027388.1_2803757_2803889_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|NZ_CP027388.1_2803977_2805633_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|NZ_CP027388.1_2805796_2806780_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP027388.1_2806755_2808366_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP027388.1_2808349_2809048_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP027388.1_2809161_2809926_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP027388.1_2810011_2810890_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP027388.1_2811228_2812929_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP027388.1_2812939_2814442_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP027388.1_2814641_2815337_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP027388.1_2815411_2817763_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP027388.1_2817927_2820834_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP027388.1_2820845_2821505_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|272aa|down_4|NZ_CP027388.1_2821621_2822437_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_5|NZ_CP027388.1_2822691_2825046_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_6|NZ_CP027388.1_2825098_2826385_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_7|NZ_CP027388.1_2826384_2827374_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_8|NZ_CP027388.1_2827370_2828192_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_9|NZ_CP027388.1_2828194_2828572_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
GCF_003018915.1_ASM301891v1	NZ_CP027388	Escherichia coli strain 2011C-4251 chromosome, complete genome	2	4392447-4392564	2	CRISPRCasFinder	no		DEDDh,RT,cas3,c2c9_V-U4,DinG,WYL,csa3,PD-DExK,PrimPol,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,c2c9_V-U4,DinG,WYL,csa3,PD-DExK,PrimPol,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA|55aa|down_0|NZ_CP027388.1_4392637_4392802_-	NA|115aa|up_9|NZ_CP027388.1_4380168_4380513_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP027388.1_4380701_4381640_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP027388.1_4381738_4382728_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP027388.1_4382749_4384081_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP027388.1_4384106_4385315_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP027388.1_4385348_4387643_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP027388.1_4387656_4388046_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP027388.1_4388117_4389482_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP027388.1_4389756_4391088_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP027388.1_4391115_4392426_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP027388.1_4392637_4392802_-	NA	NA|234aa|down_1|NZ_CP027388.1_4392824_4393526_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP027388.1_4393630_4394527_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP027388.1_4394577_4394934_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP027388.1_4395175_4395541_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP027388.1_4395833_4396820_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP027388.1_4396889_4397372_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP027388.1_4397467_4397767_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP027388.1_4397756_4398161_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP027388.1_4398163_4398469_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_003018915.1_ASM301891v1	NZ_CP027388	Escherichia coli strain 2011C-4251 chromosome, complete genome	3	4927272-4927727	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	DEDDh,RT,cas3,c2c9_V-U4,DinG,WYL,csa3,PD-DExK,PrimPol,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,7,7	7	Unclear	DEDDh,RT,cas3,c2c9_V-U4,DinG,WYL,csa3,PD-DExK,PrimPol,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA|47aa|up_1|NZ_CP027388.1_4925981_4926122_-,NA	NA|919aa|up_9|NZ_CP027388.1_4913865_4916622_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP027388.1_4916678_4917980_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP027388.1_4918027_4920262_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP027388.1_4920339_4920588_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP027388.1_4920587_4920923_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP027388.1_4920993_4921785_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP027388.1_4922012_4923650_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP027388.1_4923737_4925036_+	PRK00077, eno, enolase; Provisional	NA|47aa|up_1|NZ_CP027388.1_4925981_4926122_-	NA	NA|224aa|up_0|NZ_CP027388.1_4926260_4926932_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP027388.1_4928366_4929845_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP027388.1_4929871_4931149_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP027388.1_4931466_4932252_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP027388.1_4932321_4933776_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP027388.1_4933869_4935207_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP027388.1_4935184_4935964_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP027388.1_4935960_4936821_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP027388.1_4936968_4937544_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP027388.1_4937560_4937821_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP027388.1_4937811_4939083_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_003018915.1_ASM301891v1	NZ_CP027388	Escherichia coli strain 2011C-4251 chromosome, complete genome	4	4954758-4954969	4,2	CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,RT,cas3,c2c9_V-U4,DinG,WYL,csa3,PD-DExK,PrimPol,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	3,3	3	TypeI-E	DEDDh,RT,cas3,c2c9_V-U4,DinG,WYL,csa3,PD-DExK,PrimPol,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	NA,NA	cas3|900aa|up_9|NZ_CP027388.1_4944771_4947471_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|447aa|up_8|NZ_CP027388.1_4947568_4948909_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	NA|405aa|up_7|NZ_CP027388.1_4948960_4950174_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas8e|76aa|up_6|NZ_CP027388.1_4950216_4950444_+	cd09669, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|178aa|up_5|NZ_CP027388.1_4950440_4950974_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|358aa|up_4|NZ_CP027388.1_4950988_4952062_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP027388.1_4952072_4952819_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP027388.1_4952800_4953451_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP027388.1_4953447_4954368_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP027388.1_4954367_4954661_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP027388.1_4955050_4956088_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP027388.1_4956339_4957248_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP027388.1_4957249_4958677_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP027388.1_4958676_4959282_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP027388.1_4959331_4959655_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP027388.1_4959848_4960160_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP027388.1_4960178_4960889_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP027388.1_4960888_4961368_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP027388.1_4961364_4962414_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP027388.1_4962394_4963156_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
