assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003018835.1_ASM301883v1	NZ_CP027361	Escherichia coli strain 2014C-4639 chromosome, complete genome	1	279052-279568	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,c2c9_V-U4,DinG,PrimPol	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	TypeI-E	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,c2c9_V-U4,DinG,PrimPol	NA,NA	NA|254aa|up_9|NZ_CP027361.1_270864_271626_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP027361.1_271606_272656_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP027361.1_272652_273132_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP027361.1_273131_273842_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP027361.1_273860_274172_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP027361.1_274365_274689_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP027361.1_274738_275344_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP027361.1_275343_276771_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP027361.1_276772_277681_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP027361.1_277932_278970_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP027361.1_279664_279958_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP027361.1_279957_280878_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP027361.1_280874_281525_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP027361.1_281506_282253_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP027361.1_282263_283319_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_5|NZ_CP027361.1_283330_283870_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP027361.1_283866_285429_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	NA|51aa|down_7|NZ_CP027361.1_288419_288572_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_8|NZ_CP027361.1_288836_289571_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP027361.1_289644_291357_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_003018835.1_ASM301883v1	NZ_CP027361	Escherichia coli strain 2014C-4639 chromosome, complete genome	2	305269-305785	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,c2c9_V-U4,DinG,PrimPol	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGA,CGGTTTATCCCCGCTGGCGCGGGGA	29,25,25	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Orphan	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,c2c9_V-U4,DinG,PrimPol	NA,NA|47aa|down_1|NZ_CP027361.1_306934_307075_+	NA|424aa|up_9|NZ_CP027361.1_293914_295186_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP027361.1_295176_295437_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP027361.1_295453_296029_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP027361.1_296176_297037_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP027361.1_297033_297813_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|485aa|up_4|NZ_CP027361.1_299220_300675_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|227aa|up_3|NZ_CP027361.1_300744_301425_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|32aa|up_2|NZ_CP027361.1_301434_301530_-	PRK06935, PRK06935, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA|426aa|up_1|NZ_CP027361.1_301847_303125_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP027361.1_303151_304630_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP027361.1_306124_306796_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP027361.1_306934_307075_+	NA	NA|291aa|down_2|NZ_CP027361.1_307088_307961_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP027361.1_308020_309319_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP027361.1_309406_311044_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP027361.1_311271_312063_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP027361.1_312133_312469_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP027361.1_312468_312717_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP027361.1_312794_315029_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP027361.1_315076_316378_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_003018835.1_ASM301883v1	NZ_CP027360	Escherichia coli strain 2014C-4639 plasmid unnamed2, complete sequence	1	142017-142140	1	CRISPRCasFinder	no	DEDDh	DinG,c2c9_V-U4,DEDDh	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,DEDDh,c2c9_V-U4,DinG,PrimPol	NA,NA|75aa|down_7|NZ_CP027360.1_150725_150950_-,NA|30aa|down_8|NZ_CP027360.1_151036_151126_+	NA|471aa|up_9|NZ_CP027360.1_131470_132883_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP027360.1_133439_133649_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP027360.1_134104_134731_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP027360.1_134751_136854_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP027360.1_136857_137505_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP027360.1_137568_138237_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP027360.1_138233_139019_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP027360.1_139022_139835_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP027360.1_139846_141451_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP027360.1_141576_141882_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP027360.1_142454_143711_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP027360.1_143751_145125_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP027360.1_145339_145981_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP027360.1_146020_147169_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP027360.1_147459_148671_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP027360.1_148783_149716_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP027360.1_149712_150738_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|75aa|down_7|NZ_CP027360.1_150725_150950_-	NA	NA|30aa|down_8|NZ_CP027360.1_151036_151126_+	NA	NA|390aa|down_9|NZ_CP027360.1_151291_152461_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]
