assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003018755.1_ASM301875v1	NZ_CP027342	Escherichia coli strain 2014C-4587 chromosome, complete genome	1	1384142-1384259	1	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG,RT	NA,NA|55aa|down_0|NZ_CP027342.1_1384332_1384497_-	NA|115aa|up_9|NZ_CP027342.1_1371863_1372208_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP027342.1_1372396_1373335_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP027342.1_1373433_1374423_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP027342.1_1374444_1375776_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP027342.1_1375801_1377010_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP027342.1_1377043_1379338_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP027342.1_1379351_1379741_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP027342.1_1379812_1381177_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP027342.1_1381451_1382783_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP027342.1_1382810_1384121_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP027342.1_1384332_1384497_-	NA	NA|234aa|down_1|NZ_CP027342.1_1384519_1385221_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP027342.1_1385325_1386222_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP027342.1_1386272_1386629_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP027342.1_1386870_1387236_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP027342.1_1387528_1388515_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP027342.1_1388584_1389067_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP027342.1_1389162_1389462_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP027342.1_1389451_1389856_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP027342.1_1389858_1390164_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_003018755.1_ASM301875v1	NZ_CP027342	Escherichia coli strain 2014C-4587 chromosome, complete genome	2	1867091-1867972	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	WYL,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,14,14	14	Unclear	WYL,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG,RT	NA|47aa|up_1|NZ_CP027342.1_1865800_1865941_-,NA	NA|919aa|up_9|NZ_CP027342.1_1853684_1856441_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP027342.1_1856497_1857799_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP027342.1_1857846_1860081_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP027342.1_1860158_1860407_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP027342.1_1860406_1860742_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP027342.1_1860812_1861604_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP027342.1_1861831_1863469_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP027342.1_1863556_1864855_+	PRK00077, eno, enolase; Provisional	NA|47aa|up_1|NZ_CP027342.1_1865800_1865941_-	NA	NA|224aa|up_0|NZ_CP027342.1_1866079_1866751_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP027342.1_1868610_1870089_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP027342.1_1870115_1871393_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP027342.1_1871711_1872497_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP027342.1_1872566_1874021_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP027342.1_1874114_1875452_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP027342.1_1875429_1876209_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP027342.1_1876205_1877066_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP027342.1_1877213_1877789_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP027342.1_1877805_1878066_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP027342.1_1878056_1879328_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_003018755.1_ASM301875v1	NZ_CP027342	Escherichia coli strain 2014C-4587 chromosome, complete genome	3	1893671-1893823	2,3	PILER-CR,CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	WYL,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Type I-E	TGTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCGG	30,30	0	0	NA	NA	I-E:I-E	2,2	2	TypeI-E	WYL,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG,RT	NA,NA	NA|51aa|up_9|NZ_CP027342.1_1884670_1884823_+	pfam01848, HOK_GEF, Hok/gef family	cas3|693aa|up_8|NZ_CP027342.1_1885017_1887096_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas3|209aa|up_7|NZ_CP027342.1_1887089_1887716_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP027342.1_1887813_1889376_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP027342.1_1889372_1889909_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP027342.1_1889920_1890976_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP027342.1_1890986_1891733_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP027342.1_1891714_1892365_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP027342.1_1892361_1893285_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP027342.1_1893281_1893575_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP027342.1_1893903_1894941_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP027342.1_1895192_1896101_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP027342.1_1896102_1897530_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP027342.1_1897529_1898135_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP027342.1_1898184_1898508_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP027342.1_1898701_1899013_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP027342.1_1899031_1899742_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP027342.1_1899741_1900221_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP027342.1_1900217_1901267_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP027342.1_1901247_1902009_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_003018755.1_ASM301875v1	NZ_CP027342	Escherichia coli strain 2014C-4587 chromosome, complete genome	4	3131661-3131784	4	CRISPRCasFinder	no	DEDDh	WYL,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG,RT	NA,NA|30aa|down_7|NZ_CP027342.1_3140680_3140770_+	NA|471aa|up_9|NZ_CP027342.1_3121114_3122527_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP027342.1_3123083_3123293_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP027342.1_3123748_3124375_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP027342.1_3124395_3126498_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP027342.1_3126501_3127149_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP027342.1_3127212_3127881_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP027342.1_3127877_3128663_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP027342.1_3128666_3129479_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP027342.1_3129490_3131095_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP027342.1_3131220_3131526_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP027342.1_3132098_3133355_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP027342.1_3133395_3134769_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP027342.1_3134983_3135625_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP027342.1_3135664_3136813_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP027342.1_3137103_3138315_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP027342.1_3138427_3139360_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP027342.1_3139356_3140382_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP027342.1_3140680_3140770_+	NA	NA|390aa|down_8|NZ_CP027342.1_3140935_3142105_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP027342.1_3142250_3142832_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_003018755.1_ASM301875v1	NZ_CP027342	Escherichia coli strain 2014C-4587 chromosome, complete genome	5	3871490-3871581	5	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG,RT	NA|70aa|up_9|NZ_CP027342.1_3860740_3860950_-,NA	NA|70aa|up_9|NZ_CP027342.1_3860740_3860950_-	NA	NA|1321aa|up_8|NZ_CP027342.1_3861004_3864967_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP027342.1_3865006_3865645_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP027342.1_3865932_3867024_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP027342.1_3867023_3867716_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP027342.1_3867727_3868114_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP027342.1_3868121_3868922_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP027342.1_3868931_3869522_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP027342.1_3869532_3870027_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP027342.1_3870047_3871376_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP027342.1_3872004_3872601_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP027342.1_3872621_3872849_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP027342.1_3872886_3874128_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|385aa|down_3|NZ_CP027342.1_3874420_3875575_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP027342.1_3875935_3876856_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP027342.1_3876855_3877161_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP027342.1_3877253_3877853_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP027342.1_3877849_3880396_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP027342.1_3880395_3881568_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP027342.1_3881697_3882390_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_003018755.1_ASM301875v1	NZ_CP027342	Escherichia coli strain 2014C-4587 chromosome, complete genome	6	4186374-4186518	6	CRISPRCasFinder	no		WYL,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DinG,RT	NA,NA	NA|330aa|up_9|NZ_CP027342.1_4174273_4175263_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP027342.1_4175659_4176568_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP027342.1_4176759_4178781_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP027342.1_4179358_4180036_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP027342.1_4180028_4180784_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP027342.1_4180770_4181925_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP027342.1_4181921_4182962_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP027342.1_4183048_4184338_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP027342.1_4184396_4184873_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP027342.1_4185024_4186308_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP027342.1_4186541_4188803_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP027342.1_4188985_4190419_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP027342.1_4190494_4191547_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP027342.1_4191730_4192684_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP027342.1_4192724_4193720_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP027342.1_4193874_4194693_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP027342.1_4194693_4195752_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP027342.1_4195754_4196444_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP027342.1_4196443_4197217_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP027342.1_4197383_4197533_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
