assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003018715.1_ASM301871v1	NZ_CP027331	Escherichia coli strain 2013C-3277 chromosome, complete genome	1	1184209-1184332	1	CRISPRCasFinder	no	DEDDh	DinG,cas3,c2c9_V-U4,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,c2c9_V-U4,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|30aa|down_7|NZ_CP027331.1_1193228_1193318_+	NA|79aa|up_9|NZ_CP027331.1_1173114_1173351_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|NZ_CP027331.1_1173661_1175074_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|NZ_CP027331.1_1175630_1175840_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|NZ_CP027331.1_1176295_1176922_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|NZ_CP027331.1_1176942_1179045_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_4|NZ_CP027331.1_1179048_1179696_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_3|NZ_CP027331.1_1179759_1180428_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_2|NZ_CP027331.1_1180424_1181210_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_1|NZ_CP027331.1_1181213_1182026_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|102aa|up_0|NZ_CP027331.1_1183768_1184074_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP027331.1_1184646_1185903_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP027331.1_1185943_1187317_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP027331.1_1187531_1188173_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP027331.1_1188212_1189361_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP027331.1_1189651_1190863_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP027331.1_1190975_1191908_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP027331.1_1191904_1192930_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP027331.1_1193228_1193318_+	NA	NA|390aa|down_8|NZ_CP027331.1_1193483_1194653_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP027331.1_1194798_1195380_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_003018715.1_ASM301871v1	NZ_CP027331	Escherichia coli strain 2013C-3277 chromosome, complete genome	2	2695291-2695563	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DinG,cas3,c2c9_V-U4,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	TypeI-E	DinG,cas3,c2c9_V-U4,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP027331.1_2687103_2687865_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP027331.1_2687845_2688895_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP027331.1_2688891_2689371_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP027331.1_2689370_2690081_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP027331.1_2690099_2690411_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP027331.1_2690604_2690928_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP027331.1_2690977_2691583_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP027331.1_2691582_2693010_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP027331.1_2693011_2693920_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP027331.1_2694171_2695209_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP027331.1_2695659_2695953_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP027331.1_2695952_2696873_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP027331.1_2696869_2697520_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP027331.1_2697501_2698248_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP027331.1_2698258_2699314_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_5|NZ_CP027331.1_2699325_2699865_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP027331.1_2699861_2701424_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP027331.1_2701521_2704221_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP027331.1_2704414_2704567_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP027331.1_2704831_2705566_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_003018715.1_ASM301871v1	NZ_CP027331	Escherichia coli strain 2013C-3277 chromosome, complete genome	3	2721265-2721842	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DinG,cas3,c2c9_V-U4,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGA,CGGTTTATCCCCGCTGGCGCGGGGA	29,25,25	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	Unclear	DinG,cas3,c2c9_V-U4,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|47aa|down_1|NZ_CP027331.1_2722991_2723132_+	NA|87aa|up_9|NZ_CP027331.1_2711171_2711432_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_8|NZ_CP027331.1_2711448_2712024_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_7|NZ_CP027331.1_2712171_2713032_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_6|NZ_CP027331.1_2713028_2713808_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_5|NZ_CP027331.1_2713785_2715123_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_4|NZ_CP027331.1_2715216_2716671_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|227aa|up_3|NZ_CP027331.1_2716740_2717421_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|32aa|up_2|NZ_CP027331.1_2717430_2717526_-	PRK06935, PRK06935, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA|426aa|up_1|NZ_CP027331.1_2717843_2719121_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP027331.1_2719147_2720626_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP027331.1_2722181_2722853_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP027331.1_2722991_2723132_+	NA	NA|291aa|down_2|NZ_CP027331.1_2723145_2724018_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP027331.1_2724077_2725376_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP027331.1_2725463_2727101_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP027331.1_2727328_2728120_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP027331.1_2728190_2728526_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP027331.1_2728525_2728774_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP027331.1_2728851_2731086_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP027331.1_2731133_2732435_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_003018715.1_ASM301871v1	NZ_CP027331	Escherichia coli strain 2013C-3277 chromosome, complete genome	4	4501602-4501748	4	CRISPRCasFinder	no		DinG,cas3,c2c9_V-U4,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	51	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,c2c9_V-U4,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|470aa|up_5|NZ_CP027331.1_4492876_4494286_+,NA|529aa|down_6|NZ_CP027331.1_4511442_4513029_-	NA|132aa|up_9|NZ_CP027331.1_4490253_4490649_-	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|238aa|up_8|NZ_CP027331.1_4490779_4491493_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_7|NZ_CP027331.1_4491563_4492157_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_6|NZ_CP027331.1_4492301_4492754_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|470aa|up_5|NZ_CP027331.1_4492876_4494286_+	NA	NA|338aa|up_4|NZ_CP027331.1_4494549_4495563_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_3|NZ_CP027331.1_4495724_4496141_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_2|NZ_CP027331.1_4496186_4496690_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|952aa|up_1|NZ_CP027331.1_4498132_4500988_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP027331.1_4500987_4501431_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP027331.1_4501784_4503296_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP027331.1_4503562_4504663_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP027331.1_4504662_4505745_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP027331.1_4505863_4507366_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP027331.1_4507495_4508515_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|421aa|down_5|NZ_CP027331.1_4508958_4510221_+	PRK09692, PRK09692, integrase; Provisional	NA|529aa|down_6|NZ_CP027331.1_4511442_4513029_-	NA	NA|226aa|down_7|NZ_CP027331.1_4513318_4513996_+	pfam01527, HTH_Tnp_1, Transposase	NA|116aa|down_8|NZ_CP027331.1_4513995_4514343_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|524aa|down_9|NZ_CP027331.1_4514362_4515934_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family
