assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003018615.1_ASM301861v1	NZ_CP027586	Escherichia coli strain 2012EL-2448 chromosome, complete genome	1	1142944-1143338	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	c2c9_V-U4,DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DinG,WYL	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	TypeI-E	c2c9_V-U4,DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DinG,WYL	NA,NA	NA|254aa|up_9|NZ_CP027586.1_1134756_1135518_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP027586.1_1135498_1136548_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP027586.1_1136544_1137024_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP027586.1_1137023_1137734_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP027586.1_1137752_1138064_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP027586.1_1138257_1138581_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP027586.1_1138630_1139236_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP027586.1_1139235_1140663_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP027586.1_1140664_1141573_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP027586.1_1141824_1142862_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP027586.1_1143434_1143728_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP027586.1_1143727_1144648_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP027586.1_1144644_1145295_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP027586.1_1145276_1146023_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|358aa|down_4|NZ_CP027586.1_1146033_1147107_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|178aa|down_5|NZ_CP027586.1_1147121_1147655_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP027586.1_1147651_1149214_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP027586.1_1149311_1152011_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP027586.1_1152205_1152358_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP027586.1_1152622_1153357_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_003018615.1_ASM301861v1	NZ_CP027586	Escherichia coli strain 2012EL-2448 chromosome, complete genome	2	1169056-1169144	2	CRISPRCasFinder	no	cas3	c2c9_V-U4,DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DinG,WYL	Unclear	GGTTTATCCCCGCTGGCGCGGGGAACTC	28	0	0	NA	NA	I-E	1	1	Unclear	c2c9_V-U4,DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DinG,WYL	NA,NA|47aa|down_1|NZ_CP027586.1_1170293_1170434_+	NA|424aa|up_9|NZ_CP027586.1_1157700_1158972_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP027586.1_1158962_1159223_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP027586.1_1159239_1159815_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP027586.1_1159962_1160823_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP027586.1_1160819_1161599_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP027586.1_1161576_1162914_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP027586.1_1163007_1164462_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP027586.1_1164531_1165317_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP027586.1_1165635_1166913_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP027586.1_1166939_1168418_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP027586.1_1169483_1170155_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP027586.1_1170293_1170434_+	NA	NA|291aa|down_2|NZ_CP027586.1_1170447_1171320_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP027586.1_1171379_1172678_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP027586.1_1172765_1174403_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP027586.1_1174630_1175422_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP027586.1_1175492_1175828_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP027586.1_1175827_1176076_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP027586.1_1176153_1178388_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP027586.1_1178435_1179737_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_003018615.1_ASM301861v1	NZ_CP027586	Escherichia coli strain 2012EL-2448 chromosome, complete genome	3	4013354-4013499	3	CRISPRCasFinder	no		c2c9_V-U4,DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DinG,WYL	Orphan	CGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCG	53	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,DinG,WYL	NA,NA	NA|50aa|up_9|NZ_CP027586.1_4002334_4002484_+	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|258aa|up_8|NZ_CP027586.1_4002650_4003424_+	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|230aa|up_7|NZ_CP027586.1_4003423_4004113_+	PRK09421, modB, molybdate ABC transporter permease subunit	NA|353aa|up_6|NZ_CP027586.1_4004115_4005174_+	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|273aa|up_5|NZ_CP027586.1_4005174_4005993_-	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|332aa|up_4|NZ_CP027586.1_4006147_4007143_+	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|318aa|up_3|NZ_CP027586.1_4007183_4008137_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|344aa|up_2|NZ_CP027586.1_4008340_4009372_+	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|478aa|up_1|NZ_CP027586.1_4009447_4010881_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|754aa|up_0|NZ_CP027586.1_4011063_4013325_+	PRK11413, PRK11413, putative hydratase; Provisional	NA|428aa|down_0|NZ_CP027586.1_4013558_4014842_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|159aa|down_1|NZ_CP027586.1_4014993_4015470_-	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|430aa|down_2|NZ_CP027586.1_4015528_4016818_-	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|347aa|down_3|NZ_CP027586.1_4016904_4017945_+	PRK15108, PRK15108, biotin synthase; Provisional	NA|385aa|down_4|NZ_CP027586.1_4017941_4019096_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|252aa|down_5|NZ_CP027586.1_4019082_4019838_+	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|226aa|down_6|NZ_CP027586.1_4019830_4020508_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|674aa|down_7|NZ_CP027586.1_4021086_4023108_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|303aa|down_8|NZ_CP027586.1_4023299_4024208_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|330aa|down_9|NZ_CP027586.1_4024604_4025594_+	PRK00164, moaA, GTP 3',8-cyclase MoaA
