assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003018555.1_ASM301855v1	NZ_CP027577	Escherichia coli strain 2013C-4225 chromosome, complete genome	1	1314397-1314543	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,c2c9_V-U4,DinG,PrimPol,cas2,cas1,cas5,cas7,cse2gr11,cas8e	Orphan	GTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	51	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,DinG,PrimPol,cas2,cas1,cas5,cas7,cse2gr11,cas8e	NA|504aa|up_7|NZ_CP027577.1_1305656_1307168_+,NA|529aa|down_7|NZ_CP027577.1_1324236_1325823_-	NA|198aa|up_9|NZ_CP027577.1_1304343_1304937_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_8|NZ_CP027577.1_1305081_1305534_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|504aa|up_7|NZ_CP027577.1_1305656_1307168_+	NA	NA|338aa|up_6|NZ_CP027577.1_1307344_1308358_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_5|NZ_CP027577.1_1308519_1308936_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_4|NZ_CP027577.1_1308981_1309485_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|144aa|up_3|NZ_CP027577.1_1309677_1310109_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|217aa|up_2|NZ_CP027577.1_1310223_1310874_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP027577.1_1310927_1313783_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP027577.1_1313782_1314226_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP027577.1_1314579_1316091_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP027577.1_1316357_1317458_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP027577.1_1317457_1318540_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP027577.1_1318658_1320161_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP027577.1_1320290_1321310_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|421aa|down_5|NZ_CP027577.1_1321753_1323016_+	PRK09692, PRK09692, integrase; Provisional	NA|280aa|down_6|NZ_CP027577.1_1323259_1324099_-	PRK11001, mtlR, MltR family transcriptional regulator	NA|529aa|down_7|NZ_CP027577.1_1324236_1325823_-	NA	NA|226aa|down_8|NZ_CP027577.1_1326112_1326790_+	pfam01527, HTH_Tnp_1, Transposase	NA|116aa|down_9|NZ_CP027577.1_1326789_1327137_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein
GCF_003018555.1_ASM301855v1	NZ_CP027577	Escherichia coli strain 2013C-4225 chromosome, complete genome	2	5123682-5124198	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas5,cas7,cse2gr11,cas8e,cas3	csa3,cas3,DEDDh,c2c9_V-U4,DinG,PrimPol,cas2,cas1,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	TypeI-E	csa3,cas3,DEDDh,c2c9_V-U4,DinG,PrimPol,cas2,cas1,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP027577.1_5115494_5116256_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP027577.1_5116236_5117286_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP027577.1_5117282_5117762_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP027577.1_5117761_5118472_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP027577.1_5118490_5118802_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP027577.1_5118995_5119319_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP027577.1_5119368_5119974_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP027577.1_5119973_5121401_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP027577.1_5121402_5122311_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP027577.1_5122562_5123600_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP027577.1_5124294_5124588_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP027577.1_5124587_5125508_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|249aa|down_2|NZ_CP027577.1_5126136_5126883_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_3|NZ_CP027577.1_5126893_5127949_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_4|NZ_CP027577.1_5127960_5128500_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_5|NZ_CP027577.1_5128496_5130059_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_6|NZ_CP027577.1_5130156_5132856_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_7|NZ_CP027577.1_5133049_5133202_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_8|NZ_CP027577.1_5133466_5134201_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP027577.1_5134274_5135987_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_003018555.1_ASM301855v1	NZ_CP027577	Escherichia coli strain 2013C-4225 chromosome, complete genome	3	5149900-5150111	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	csa3,cas3,DEDDh,c2c9_V-U4,DinG,PrimPol,cas2,cas1,cas5,cas7,cse2gr11,cas8e	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	3,3,2	3	Unclear	csa3,cas3,DEDDh,c2c9_V-U4,DinG,PrimPol,cas2,cas1,cas5,cas7,cse2gr11,cas8e	NA,NA|47aa|down_1|NZ_CP027577.1_5151260_5151401_+	NA|87aa|up_9|NZ_CP027577.1_5139806_5140067_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_8|NZ_CP027577.1_5140083_5140659_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_7|NZ_CP027577.1_5140806_5141667_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_6|NZ_CP027577.1_5141663_5142443_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_5|NZ_CP027577.1_5142420_5143758_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_4|NZ_CP027577.1_5143851_5145306_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|227aa|up_3|NZ_CP027577.1_5145375_5146056_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|32aa|up_2|NZ_CP027577.1_5146065_5146161_-	PRK06935, PRK06935, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA|426aa|up_1|NZ_CP027577.1_5146478_5147756_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP027577.1_5147782_5149261_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP027577.1_5150450_5151122_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP027577.1_5151260_5151401_+	NA	NA|291aa|down_2|NZ_CP027577.1_5151414_5152287_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP027577.1_5152346_5153645_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP027577.1_5153732_5155370_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP027577.1_5155597_5156389_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP027577.1_5156459_5156795_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP027577.1_5156794_5157043_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP027577.1_5157120_5159355_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP027577.1_5159402_5160704_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
