assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003018495.1_ASM301849v1	NZ_CP027552	Escherichia coli strain 2015C-4498 chromosome, complete genome	1	4022315-4022448	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,c2c9_V-U4,WYL,DinG,PrimPol,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACA	38	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,WYL,DinG,PrimPol,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|406aa|up_9|NZ_CP027552.1_4011006_4012224_-	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|181aa|up_8|NZ_CP027552.1_4012223_4012766_-	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase	NA|293aa|up_7|NZ_CP027552.1_4012770_4013649_-	PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional	NA|300aa|up_6|NZ_CP027552.1_4013706_4014606_-	PRK09987, PRK09987, dTDP-4-dehydrorhamnose reductase; Provisional	NA|362aa|up_5|NZ_CP027552.1_4014605_4015691_-	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional	NA|298aa|up_4|NZ_CP027552.1_4016062_4016956_-	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|332aa|up_3|NZ_CP027552.1_4017198_4018194_-	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs	NA|465aa|up_2|NZ_CP027552.1_4018351_4019746_-	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|407aa|up_1|NZ_CP027552.1_4019756_4020977_-	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|427aa|up_0|NZ_CP027552.1_4020973_4022254_-	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|493aa|down_0|NZ_CP027552.1_4022529_4024008_-	PRK10459, PRK10459, MOP flippase family protein	NA|465aa|down_1|NZ_CP027552.1_4024009_4025404_-	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|457aa|down_2|NZ_CP027552.1_4025458_4026829_-	PRK15414, PRK15414, phosphomannomutase	NA|479aa|down_3|NZ_CP027552.1_4027021_4028458_-	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|408aa|down_4|NZ_CP027552.1_4028460_4029684_-	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|160aa|down_5|NZ_CP027552.1_4029680_4030160_-	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|322aa|down_6|NZ_CP027552.1_4030162_4031128_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|374aa|down_7|NZ_CP027552.1_4031130_4032252_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|183aa|down_8|NZ_CP027552.1_4032277_4032826_-	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|249aa|down_9|NZ_CP027552.1_4032841_4033588_-	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE
GCF_003018495.1_ASM301849v1	NZ_CP027552	Escherichia coli strain 2015C-4498 chromosome, complete genome	2	4058538-4058619	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,c2c9_V-U4,WYL,DinG,PrimPol,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CCACTGCAGTGTCGACTATTGCATC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,c2c9_V-U4,WYL,DinG,PrimPol,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|20aa|up_1|NZ_CP027552.1_4057045_4057105_-,NA|19aa|up_0|NZ_CP027552.1_4057377_4057434_-,NA	NA|618aa|up_9|NZ_CP027552.1_4044253_4046107_-	PRK10833, PRK10833, putative assembly protein; Provisional	NA|194aa|up_8|NZ_CP027552.1_4046128_4046710_-	TIGR02274, Probable_deoxycytidine_triphosphate_deaminase, deoxycytidine triphosphate deaminase	NA|214aa|up_7|NZ_CP027552.1_4046801_4047443_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|1106aa|up_6|NZ_CP027552.1_4047760_4051078_+	PRK09776, PRK09776, putative diguanylate cyclase; Provisional	NA|286aa|up_5|NZ_CP027552.1_4051116_4051974_-	PRK10308, PRK10308, 3-methyl-adenine DNA glycosylase II; Provisional	NA|451aa|up_4|NZ_CP027552.1_4052107_4053460_+	PRK11678, PRK11678, putative chaperone; Provisional	NA|640aa|up_3|NZ_CP027552.1_4053492_4055412_-	COG4248, COG4248, Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]	NA|254aa|up_2|NZ_CP027552.1_4055408_4056170_-	pfam13672, PP2C_2, Protein phosphatase 2C	NA|20aa|up_1|NZ_CP027552.1_4057045_4057105_-	NA	NA|19aa|up_0|NZ_CP027552.1_4057377_4057434_-	NA	NA|339aa|down_0|NZ_CP027552.1_4060244_4061261_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|90aa|down_1|NZ_CP027552.1_4062145_4062415_-	pfam06820, Phage_fiber_C, Putative prophage tail fibre C-terminus	NA|438aa|down_2|NZ_CP027552.1_4062416_4063730_-	pfam08400, phage_tail_N, Prophage tail fibre N-terminal	NA|200aa|down_3|NZ_CP027552.1_4063794_4064394_-	pfam06316, Ail_Lom, Enterobacterial Ail/Lom protein	NA|1160aa|down_4|NZ_CP027552.1_4064461_4067941_-	COG4733, COG4733, Phage-related protein, tail component [Function unknown]	NA|211aa|down_5|NZ_CP027552.1_4068001_4068634_-	COG4723, COG4723, Phage-related protein, tail component [Function unknown]	NA|248aa|down_6|NZ_CP027552.1_4068570_4069314_-	cd08073, MPN_NLPC_P60, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains	NA|233aa|down_7|NZ_CP027552.1_4069319_4070018_-	COG4672, gp18, Phage-related protein [Function unknown]	NA|110aa|down_8|NZ_CP027552.1_4070017_4070347_-	COG4718, COG4718, Phage-related protein [Function unknown]	NA|854aa|down_9|NZ_CP027552.1_4070343_4072905_-	COG5281, COG5281, Phage-related minor tail protein [Function unknown]
GCF_003018495.1_ASM301849v1	NZ_CP027552	Escherichia coli strain 2015C-4498 chromosome, complete genome	3	4906681-4907136	1,3,1	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	csa3,cas3,DEDDh,c2c9_V-U4,WYL,DinG,PrimPol,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,6,5	7	TypeI-E	csa3,cas3,DEDDh,c2c9_V-U4,WYL,DinG,PrimPol,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|209aa|up_9|NZ_CP027552.1_4897935_4898562_-	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA|254aa|up_8|NZ_CP027552.1_4898555_4899317_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_7|NZ_CP027552.1_4899297_4900347_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_6|NZ_CP027552.1_4900343_4900823_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|104aa|up_5|NZ_CP027552.1_4901550_4901862_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP027552.1_4902055_4902379_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP027552.1_4902428_4903034_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP027552.1_4903033_4904461_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP027552.1_4904462_4905371_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP027552.1_4905622_4906660_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP027552.1_4907232_4907526_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP027552.1_4907525_4908446_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP027552.1_4908442_4909093_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP027552.1_4909074_4909821_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP027552.1_4909831_4910887_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_5|NZ_CP027552.1_4910898_4911438_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP027552.1_4911434_4912997_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP027552.1_4913094_4915794_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP027552.1_4915987_4916140_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP027552.1_4916404_4917139_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_003018495.1_ASM301849v1	NZ_CP027552	Escherichia coli strain 2015C-4498 chromosome, complete genome	4	4932245-4932578	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	csa3,cas3,DEDDh,c2c9_V-U4,WYL,DinG,PrimPol,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,4	5	Unclear	csa3,cas3,DEDDh,c2c9_V-U4,WYL,DinG,PrimPol,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|47aa|down_1|NZ_CP027552.1_4933727_4933868_+	NA|122aa|up_9|NZ_CP027552.1_4921039_4921405_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|up_8|NZ_CP027552.1_4921482_4922754_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_7|NZ_CP027552.1_4922744_4923005_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_6|NZ_CP027552.1_4923021_4923597_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_5|NZ_CP027552.1_4923744_4924605_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_4|NZ_CP027552.1_4924601_4925381_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_3|NZ_CP027552.1_4925358_4926696_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_2|NZ_CP027552.1_4926789_4928244_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_1|NZ_CP027552.1_4928313_4929099_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_0|NZ_CP027552.1_4929417_4930695_+	cd06174, MFS, Major Facilitator Superfamily	NA|224aa|down_0|NZ_CP027552.1_4932917_4933589_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP027552.1_4933727_4933868_+	NA	NA|291aa|down_2|NZ_CP027552.1_4933881_4934754_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP027552.1_4934813_4936112_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP027552.1_4936199_4937837_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP027552.1_4938064_4938856_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP027552.1_4938926_4939262_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP027552.1_4939261_4939510_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP027552.1_4939587_4941822_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP027552.1_4941869_4943171_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
